genome.fa.s445.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  69  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13013718--13013818	22	4.6	22	81	2	114	42	8	2	45	1.50
13013901--13013982	22	3.8	22	77	9	78	40	8	2	48	1.47
13013972--13014017	22	2.1	22	87	0	65	36	10	8	43	1.71
13014065--13014263	22	9.0	22	70	14	97	36	9	3	50	1.50
13014065--13014184	45	2.7	41	75	14	114	39	8	4	48	1.53
13014144--13014191	11	4.4	11	76	10	53	37	6	2	54	1.38
13014157--13014263	44	2.4	43	77	9	108	33	10	1	54	1.45
13014396--13014445	11	4.5	11	79	0	64	38	8	2	52	1.43
13014396--13014510	22	5.2	22	74	4	88	34	11	4	49	1.58
13014621--13014672	22	2.4	22	93	6	88	38	7	1	51	1.42
13015445--13015491	22	2.1	22	96	0	85	48	12	2	36	1.53
13017081--13017112	3	10.7	3	100	0	64	31	0	0	68	0.90
13017856--13017993	30	4.6	30	69	9	86	57	6	2	34	1.37
13017906--13017961	29	1.9	29	88	0	85	50	5	1	42	1.35
13017898--13017969	29	2.5	29	81	2	83	56	4	2	36	1.33
13018055--13018162	10	11.7	9	77	12	87	57	2	2	37	1.28
13018108--13018147	11	3.8	11	83	12	57	57	0	2	40	1.12
13018027--13018169	29	5.0	28	71	18	89	55	4	2	37	1.33
13018109--13018180	10	7.2	10	74	12	67	52	2	2	41	1.30
13018306--13018365	31	1.9	31	82	0	75	36	3	5	55	1.38
13018074--13018430	10	37.0	9	67	17	58	39	3	4	52	1.38
13019637--13019746	42	2.6	42	80	0	121	31	20	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13024523--13024555	16	2.0	17	94	5	59	48	0	0	51	1.00
13027770--13027899	30	4.4	28	70	9	82	53	3	5	37	1.42
13036149--13036185	19	1.9	19	100	0	74	40	10	16	32	1.83
13044998--13045034	19	2.0	19	94	5	67	54	0	8	37	1.30
13045112--13045153	17	2.3	18	84	8	50	40	0	2	57	1.12
13045382--13045428	19	2.5	20	80	20	64	57	4	0	38	1.18
13045380--13045428	18	2.7	19	84	6	66	57	4	0	38	1.18
13046075--13046142	32	2.1	32	83	0	82	41	5	5	47	1.52
13046252--13046290	11	3.4	11	80	13	51	38	2	0	58	1.12
13062813--13062857	23	2.0	23	86	8	65	44	0	2	53	1.13
13079090--13079159	31	2.3	31	97	0	131	61	11	18	8	1.54
13091636--13091673	19	2.0	20	84	5	51	34	2	23	39	1.69
13093099--13093158	27	2.3	27	85	2	86	51	3	0	45	1.17
13094504--13094529	12	2.2	12	100	0	52	53	0	0	46	1.00
13094542--13094592	21	2.5	21	90	3	77	50	0	0	49	1.00
13099642--13099684	21	2.0	21	100	0	86	44	18	18	18	1.87
13100065--13100107	21	2.0	21	95	0	77	27	27	18	25	1.98
13109087--13109136	26	1.9	26	91	0	82	52	12	8	28	1.66
13110513--13110621	57	1.9	57	86	0	155	31	10	18	40	1.84
13111216--13111241	9	2.9	9	100	0	52	19	69	11	0	1.18
13113413--13113525	59	1.9	59	92	0	190	30	11	18	39	1.86
13115450--13115727	147	1.9	147	96	3	515	46	1	5	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13119486--13119532	15	3.3	15	76	8	53	57	6	0	36	1.24
13120091--13120121	2	15.5	2	93	0	53	48	0	0	51	1.00
13120479--13120531	2	27.0	2	77	11	56	45	3	1	49	1.31
13122579--13122670	20	4.5	20	75	13	89	41	5	5	47	1.49
13122728--13122758	15	2.1	15	93	0	53	19	0	3	77	0.90
13123383--13123426	22	2.0	23	86	4	63	54	0	4	40	1.21
13123366--13123432	22	3.0	22	73	6	62	55	0	2	41	1.15
13123884--13123985	29	3.3	29	78	9	89	45	0	3	50	1.20
13124502--13124542	21	2.0	21	85	9	57	41	9	7	41	1.66
13124809--13124840	2	16.0	2	93	0	55	50	0	3	46	1.17
13125745--13125789	21	2.2	20	84	7	56	35	0	0	64	0.94
13125846--13125880	7	4.9	7	89	6	52	71	0	0	28	0.86
13125848--13125882	8	4.4	8	89	10	54	71	0	0	28	0.86
13125851--13125882	15	2.1	15	100	0	64	71	0	0	28	0.86
13126307--13126471	85	2.0	78	90	8	258	33	12	12	41	1.80
13131419--13131581	79	2.0	80	92	2	274	49	5	9	36	1.58
13135042--13135081	21	1.9	21	84	0	53	50	0	7	42	1.30
13137071--13137111	18	2.3	18	87	4	57	36	0	0	63	0.95
13137534--13137576	21	2.2	19	83	8	50	46	0	4	48	1.22
13137666--13137714	22	2.2	23	81	3	55	34	6	8	51	1.57
13147202--13147269	34	2.0	34	85	5	93	35	17	16	30	1.92
13147633--13147664	8	3.8	9	88	12	50	50	9	0	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13150195--13150233	14	2.8	13	88	7	51	79	7	5	7	1.05
13150166--13150242	21	3.6	19	77	20	57	75	9	5	10	1.18
13152200--13152225	10	2.6	10	100	0	52	46	0	0	53	1.00
13153695--13154121	61	6.8	61	74	12	273	35	10	13	40	1.80
13153767--13154137	63	6.0	61	72	10	179	33	11	14	40	1.81
13154789--13154977	63	3.0	61	78	8	195	33	16	11	38	1.85
13159113--13159139	9	3.0	9	100	0	54	66	0	0	33	0.92
13162814--13162847	15	2.3	15	90	5	52	29	0	5	64	1.17
13163127--13163170	21	2.0	23	86	8	65	61	4	2	31	1.28
13165599--13165645	22	2.1	22	84	7	60	74	4	0	21	0.99
13173312--13173354	21	2.0	21	82	8	52	20	27	13	37	1.91
13190956--13191005	26	2.0	25	84	11	66	62	2	2	34	1.18
13207640--13207737	46	2.2	45	81	10	119	28	9	7	55	1.58
13212012--13212070	21	2.8	20	80	7	73	67	1	3	27	1.16
13212316--13212350	16	2.2	16	90	5	54	40	5	2	51	1.40
13216036--13216307	135	2.0	135	99	0	535	37	17	17	27	1.92
13220311--13220415	28	3.8	28	92	0	174	20	0	33	46	1.51
13224009--13224114	28	3.8	28	86	3	142	25	0	28	45	1.60
13229055--13229100	23	1.9	25	86	8	69	56	17	10	15	1.67
13234539--13234590	26	1.9	28	88	7	81	40	13	5	40	1.68
13234801--13234830	15	1.9	15	93	6	51	6	30	6	56	1.51
13237678--13237715	20	1.9	20	88	0	58	42	18	5	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13237972--13237998	3	9.0	3	100	0	54	66	0	0	33	0.92
13238103--13238143	5	8.6	5	86	10	59	43	2	0	53	1.13
13238100--13238144	13	3.3	13	85	11	63	46	2	0	51	1.13
13238350--13238693	115	3.0	115	75	9	319	39	11	24	24	1.88
13249901--13249991	47	1.9	47	88	0	137	67	5	8	18	1.38
13251470--13251509	20	2.0	21	85	5	55	55	25	0	20	1.44
13251865--13251964	3	33.7	3	74	9	89	58	1	6	35	1.30
13251865--13252034	5	32.2	5	75	14	53	54	2	5	38	1.36
13251870--13252013	59	2.5	59	80	5	159	56	2	6	34	1.39
13252006--13252038	5	6.6	5	96	0	57	45	0	0	54	0.99
13255750--13255783	18	1.9	18	94	5	61	52	0	0	47	1.00
13256689--13256719	15	2.1	14	94	5	53	77	0	0	22	0.77
13259489--13259518	15	1.9	16	93	6	53	33	0	13	53	1.40
13260483--13260579	46	2.1	46	84	5	124	72	10	1	16	1.17
13262452--13262491	16	2.5	16	88	8	55	42	0	15	42	1.46
13264298--13264328	15	2.1	15	93	0	53	38	0	25	35	1.56
13267806--13267854	19	2.5	19	80	9	55	53	0	2	44	1.12
13272769--13272808	20	2.0	21	85	5	55	5	10	2	82	0.91
13272924--13272966	13	3.2	13	83	3	50	81	2	6	9	0.95
13272919--13272966	19	2.6	18	83	12	53	81	2	6	10	0.95
13273336--13273400	21	3.0	21	78	14	71	60	10	3	26	1.45
13273343--13273395	11	4.9	11	82	11	65	58	13	1	26	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13273823--13273870	3	16.0	3	100	0	96	66	0	0	33	0.92
13274364--13274509	69	2.1	69	83	3	177	30	25	15	28	1.96
13286201--13286247	23	2.0	23	100	0	94	36	12	17	34	1.87
13286912--13286941	14	2.1	14	93	0	51	10	16	33	40	1.82
13289848--13289886	12	3.1	12	85	10	51	12	0	7	79	0.93
13289824--13289886	34	1.9	32	90	6	99	12	0	6	80	0.88
13289849--13289885	7	5.6	7	87	12	51	13	0	8	78	0.96
13290414--13291533	48	23.1	48	79	7	991	39	20	12	28	1.88
13290414--13291536	97	11.6	95	81	8	1124	39	20	12	28	1.88
13290414--13291535	145	7.7	144	80	9	1138	39	20	12	28	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147