genome.fa.s445.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  92  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16925251--16925438	9	19.9	9	67	16	69	34	3	6	56	1.41
16925251--16925438	19	9.9	19	70	14	102	34	3	6	56	1.41
16925251--16925329	20	4.1	19	76	15	58	32	2	5	59	1.33
16925368--16925426	29	2.1	27	84	6	73	42	1	6	49	1.39
16935476--16935517	11	3.8	11	87	0	66	19	0	28	52	1.46
16958284--16958366	42	2.0	42	85	0	112	46	12	12	28	1.77
16971562--16971829	18	14.2	18	66	19	95	46	1	0	51	1.15
16971568--16971726	28	5.8	28	69	18	86	47	0	0	51	1.10
16971560--16971947	36	10.9	36	65	16	139	47	1	0	50	1.14
16971604--16971920	15	21.1	15	66	20	80	46	1	0	51	1.17
16971565--16971716	72	2.1	72	80	10	168	47	0	0	51	1.05
16971649--16971731	42	2.0	42	83	7	105	44	2	0	53	1.13
16971748--16971840	18	5.3	17	71	12	55	44	1	1	53	1.14
16971790--16971883	29	3.1	29	75	14	100	46	2	1	50	1.20
16971807--16971921	29	4.0	28	75	19	78	47	0	0	50	1.13
16971852--16971937	45	1.9	45	81	13	106	50	1	0	48	1.08
16973684--16973878	65	3.0	65	91	0	318	20	27	9	42	1.83
16976664--16976709	24	1.9	24	82	8	58	26	13	13	47	1.78
16987878--16987969	47	1.9	47	86	2	130	44	16	4	34	1.67
16994739--16994859	61	2.0	61	95	1	217	19	16	4	59	1.53
17004831--17004862	15	2.3	15	89	10	50	84	0	3	12	0.74
17005845--17006066	50	4.4	50	79	9	218	36	12	14	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17005853--17006058	103	2.0	104	84	2	272	34	12	15	37	1.85
17006432--17006458	2	13.5	2	100	0	54	51	0	0	48	1.00
17011333--17011548	64	3.4	64	72	10	176	35	13	14	36	1.85
17011350--17011588	126	1.9	126	81	5	286	34	11	14	39	1.81
17011783--17011899	61	1.9	61	82	5	146	35	11	6	46	1.68
17011902--17011937	12	3.0	12	95	0	63	33	5	19	41	1.75
17012408--17012459	18	2.9	18	85	0	68	44	0	1	53	1.11
17012431--17012478	13	4.1	13	77	22	52	54	0	0	45	0.99
17016045--17016113	21	3.1	22	75	8	77	31	0	1	66	1.00
17016045--17016118	22	3.4	22	72	20	75	31	0	1	67	0.99
17016137--17016170	16	2.0	18	88	11	54	44	0	0	55	0.99
17021114--17021202	38	2.4	37	83	5	108	50	7	5	35	1.55
17034569--17034601	17	2.0	17	88	5	50	6	0	21	72	1.05
17035624--17035661	16	2.4	16	86	8	51	7	13	2	76	1.11
17035653--17035686	13	2.5	13	85	4	50	5	0	5	88	0.64
17035653--17035703	17	2.9	18	76	5	59	9	0	5	84	0.78
17035636--17035703	35	1.9	35	82	5	84	10	2	5	80	0.98
17036017--17036291	106	2.6	106	80	3	347	34	12	15	38	1.85
17045644--17045699	18	3.2	18	77	5	53	3	1	17	76	1.01
17046935--17047004	22	3.0	22	76	15	61	21	5	4	68	1.28
17048928--17048967	18	2.3	18	87	12	57	45	2	15	37	1.59
17051167--17051254	44	2.0	44	97	0	167	53	0	30	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17060617--17060680	32	2.0	32	90	0	101	26	9	7	56	1.58
17060621--17060681	18	3.7	16	72	18	54	24	11	8	55	1.62
17061210--17061388	42	4.3	41	82	2	205	54	13	7	24	1.65
17061226--17061388	84	1.9	84	88	2	247	53	12	7	26	1.65
17061411--17061508	43	2.3	42	77	6	108	53	22	9	15	1.70
17063748--17063800	27	1.9	28	84	3	72	35	3	13	47	1.61
17065263--17065315	25	2.1	25	82	10	63	15	7	11	66	1.44
17067600--17067646	8	5.9	8	79	16	53	74	0	6	19	1.03
17067597--17067647	15	3.3	15	79	15	59	74	0	5	19	1.02
17068345--17068374	13	2.3	13	94	0	51	16	0	6	76	0.99
17072311--17072343	12	2.5	13	90	9	50	81	0	15	3	0.80
17072705--17072765	1	61.0	1	75	0	50	86	0	11	1	0.63
17072752--17072799	16	2.9	16	76	14	53	75	0	16	8	1.04
17072705--17072807	45	2.3	45	81	9	113	80	0	13	5	0.88
17072705--17072781	10	8.1	9	79	13	75	83	0	14	2	0.76
17073927--17073974	21	2.3	21	85	7	62	37	8	14	39	1.76
17074630--17075174	44	12.5	43	78	5	443	25	13	15	45	1.82
17074630--17075150	217	2.4	218	81	5	608	25	13	15	45	1.82
17074675--17075174	261	1.9	262	84	4	661	26	13	15	45	1.82
17076370--17076411	17	2.5	17	96	0	75	14	0	2	83	0.75
17076636--17076666	14	2.2	14	94	0	53	83	3	0	12	0.75
17078914--17079010	46	2.1	46	80	3	106	40	10	9	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17080999--17081042	16	2.6	18	80	20	58	43	2	0	54	1.12
17085436--17085512	26	2.8	28	76	13	79	51	2	1	44	1.23
17090360--17090426	21	3.1	21	68	19	66	46	7	5	40	1.57
17090339--17090426	43	2.0	44	93	2	151	43	7	11	37	1.70
17094361--17094419	29	2.0	29	96	0	109	37	8	20	33	1.83
17099064--17099096	15	2.1	16	88	5	50	51	6	24	18	1.68
17105865--17106051	102	1.8	100	81	3	230	42	14	11	32	1.81
17105853--17106051	50	3.9	50	78	4	193	42	14	11	31	1.81
17106248--17106343	48	2.0	48	95	0	174	31	22	11	34	1.90
17106656--17106719	11	5.7	11	76	12	60	23	23	1	51	1.57
17106655--17106727	19	3.7	19	75	18	53	21	23	1	53	1.54
17106655--17106726	11	6.5	11	72	13	58	22	23	1	52	1.55
17106655--17106726	22	3.2	22	74	18	69	22	23	1	52	1.55
17110007--17110058	27	2.0	27	88	3	79	17	1	34	46	1.59
17110072--17110145	13	5.7	13	73	7	53	13	1	37	47	1.52
17110033--17110160	20	6.5	20	71	16	72	14	0	38	46	1.50
17122148--17122186	18	2.2	18	85	0	51	51	10	12	25	1.71
17122302--17122329	13	2.2	13	100	0	56	7	0	35	57	1.26
17122305--17122383	7	12.1	7	73	10	53	13	1	40	44	1.52
17122301--17122386	13	6.8	13	73	11	54	12	1	38	47	1.49
17127092--17128680	795	2.0	794	88	2	2368	32	16	19	31	1.94
17129164--17129204	15	2.7	15	92	0	64	21	24	19	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17129414--17129461	24	2.0	24	91	0	78	43	22	6	27	1.77
17129404--17129460	13	4.4	14	75	18	52	40	21	8	29	1.83
17129518--17129567	22	2.3	22	82	0	64	62	20	0	18	1.34
17136842--17136892	4	12.8	4	91	0	84	52	0	47	0	1.00
17136842--17136892	6	8.5	6	95	0	84	52	0	47	0	1.00
17146540--17146610	20	3.4	19	72	22	61	47	36	0	15	1.46
17146533--17146639	44	2.4	45	81	3	128	45	35	0	17	1.55
17146728--17146789	14	4.5	14	81	4	72	43	32	1	22	1.63
17146724--17146795	27	2.7	26	80	8	83	47	30	1	20	1.59
17146724--17146763	13	3.0	13	82	7	53	47	27	0	25	1.52
17146728--17146848	7	18.0	7	67	10	56	47	33	1	18	1.58
17146778--17146827	26	1.9	26	100	0	100	56	34	2	8	1.40
17146778--17146839	26	2.4	26	91	0	97	53	33	1	11	1.46
17152733--17152802	31	2.5	28	84	13	83	74	5	0	20	1.02
17153056--17153129	31	2.4	31	86	6	96	48	22	2	25	1.64
17154601--17154810	114	1.8	115	80	10	252	39	12	21	26	1.89
17154709--17155062	181	2.0	181	83	3	453	40	13	18	27	1.88
17155483--17155603	17	7.1	17	67	9	75	33	17	19	28	1.95
17155554--17155660	34	3.1	33	76	19	112	29	17	17	34	1.94
17155554--17155701	69	2.1	69	85	4	183	32	15	18	33	1.93
17160704--17160759	23	2.4	23	90	3	85	33	8	7	50	1.61
17160704--17160769	23	2.8	23	83	4	69	34	9	6	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17160830--17160874	11	3.7	12	85	11	56	73	2	6	17	1.15
17160843--17160897	17	3.2	17	80	12	60	76	3	3	16	1.07
17160843--17160922	18	4.6	17	78	10	65	76	5	3	15	1.10
17160883--17160923	12	3.2	12	83	12	55	80	4	2	12	0.97
17161177--17161252	31	2.5	31	86	0	107	50	21	2	26	1.62
17161748--17161786	11	3.6	11	93	3	62	69	0	0	30	0.89
17167536--17167659	22	5.6	22	70	5	81	25	21	19	33	1.97
17167525--17167649	44	2.8	44	82	0	160	26	20	19	33	1.96
17168662--17168740	8	10.0	7	73	26	61	5	16	1	77	1.01
17169231--17169265	18	1.9	18	88	11	54	2	11	0	85	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147