genome.fa.s445.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  25  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5289715--5289772	18	3.2	19	72	18	52	34	1	0	63	1.04
5289708--5289770	16	3.7	16	71	21	56	34	1	0	63	1.04
5290048--5290100	22	2.5	22	78	9	56	43	0	0	56	0.99
5292169--5292267	51	1.9	51	80	12	112	51	0	2	46	1.12
5292389--5292422	17	1.9	18	88	5	52	70	2	0	26	1.01
5295244--5295270	14	1.9	14	100	0	54	88	3	0	7	0.61
5296076--5296109	15	2.3	15	89	0	50	20	2	8	67	1.31
5297126--5297218	35	2.6	35	83	8	107	34	22	8	34	1.85
5297859--5297904	24	1.9	24	95	0	83	30	8	15	45	1.76
5300269--5300352	41	2.0	41	100	0	168	38	9	22	29	1.86
5300664--5300768	29	3.5	30	84	6	142	40	4	1	52	1.33
5300680--5300767	31	2.9	31	90	5	128	40	5	1	52	1.33
5300683--5300767	30	2.9	28	81	11	75	42	5	1	50	1.34
5301129--5301222	29	3.1	29	84	10	100	48	0	2	48	1.13
5301145--5301222	29	2.6	30	86	12	106	46	0	2	51	1.14
5301263--5301300	18	2.2	18	85	4	51	57	0	0	42	0.98
5305097--5305142	21	2.2	21	92	3	76	50	0	0	50	1.00
5305094--5305145	20	2.7	19	82	11	70	48	0	0	51	1.00
5307447--5307558	58	1.9	57	85	5	154	46	5	12	35	1.65
5318665--5318930	73	3.6	73	80	2	275	24	16	13	45	1.83
5318947--5319137	85	2.2	86	85	2	251	21	19	14	44	1.86
5319120--5319292	80	2.2	79	81	3	195	20	15	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5319120--5319324	79	2.6	81	80	5	186	20	15	16	47	1.83
5319276--5319434	86	1.9	85	81	6	196	23	16	14	45	1.84
5320136--5320167	11	2.8	12	86	13	50	59	0	34	6	1.23
5320443--5320478	14	2.5	15	86	9	56	27	0	2	69	1.02
5320538--5321070	60	8.9	58	78	12	447	47	5	11	35	1.64
5320546--5321077	118	4.4	116	80	8	536	46	6	12	35	1.66
5321596--5322530	505	1.9	504	93	0	1627	35	16	14	34	1.88
5322946--5322971	7	3.7	7	100	0	52	42	0	0	57	0.98
5324469--5324614	60	2.4	60	78	2	159	47	10	13	28	1.77
5324574--5324944	188	2.0	193	80	6	427	43	11	13	30	1.80
5324850--5325116	62	4.4	61	79	7	258	42	11	13	32	1.79
5325154--5325283	59	2.2	58	82	6	145	41	10	17	30	1.82
5325267--5325326	30	2.0	30	96	0	111	31	0	25	43	1.55
5326318--5326348	15	2.1	15	93	0	53	67	0	3	29	1.06
5328048--5328090	23	1.9	22	85	4	59	37	9	16	37	1.81
5328993--5329139	67	2.2	67	92	2	242	38	16	8	36	1.80
5329034--5329139	33	3.2	33	62	12	81	35	16	9	37	1.82
5329548--5329604	19	3.0	19	81	0	60	63	0	22	14	1.30
5332565--5332647	41	2.0	41	83	4	105	40	7	10	40	1.68
5333507--5333557	27	1.9	26	88	4	75	52	0	1	45	1.12
5334308--5334340	16	1.9	18	88	11	52	27	12	6	54	1.60
5334300--5334403	52	2.0	52	83	3	129	26	15	8	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5342791--5342921	42	3.1	43	82	13	134	48	16	10	23	1.77
5343621--5343715	50	1.9	50	84	0	127	43	10	18	27	1.83
5356043--5356165	58	2.1	58	90	0	192	35	9	17	37	1.82
5356217--5356241	2	12.5	2	100	0	50	52	0	0	48	1.00
5363318--5363365	24	2.0	24	84	8	62	31	16	35	16	1.92
5363324--5363370	24	2.0	24	87	8	69	29	17	38	14	1.89
5364884--5364913	16	1.9	15	93	6	51	26	0	6	66	1.16
5366122--5366167	23	2.0	24	91	4	76	4	15	26	54	1.59
5366620--5366659	20	2.0	20	85	9	55	52	5	5	37	1.45
5369747--5369794	15	3.2	15	90	0	78	14	0	4	81	0.84
5370923--5370973	20	2.5	20	93	6	84	49	0	0	50	1.00
5371300--5371342	18	2.4	18	84	7	52	9	37	2	51	1.47
5372354--5372512	49	3.2	50	82	3	205	38	18	12	30	1.88
5372726--5373081	99	3.6	99	81	2	412	41	19	12	25	1.87
5373407--5373530	35	3.5	35	84	5	151	35	12	14	37	1.85
5373751--5373796	21	2.1	23	84	8	60	17	17	4	60	1.51
5382060--5382113	28	1.9	28	82	14	67	53	1	0	44	1.11
5382097--5382133	16	2.2	17	90	4	58	62	0	0	37	0.96
5383740--5383778	2	20.0	2	89	5	62	48	2	0	48	1.15
5385946--5386018	37	1.9	39	86	5	105	27	2	1	68	1.11
5386040--5386110	17	4.1	17	73	18	56	25	7	1	66	1.25
5386033--5386114	24	3.2	25	72	14	62	23	6	1	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5386057--5386095	20	1.9	21	85	15	55	20	7	2	69	1.26
5386203--5386229	13	2.1	13	100	0	54	48	7	14	29	1.71
5387049--5387096	5	9.8	5	79	20	57	18	2	0	79	0.84
5387115--5387383	58	4.7	57	87	5	366	44	5	11	37	1.66
5387132--5387220	28	3.1	28	63	22	67	44	5	11	38	1.64
5387116--5387384	115	2.3	114	88	6	375	44	5	11	37	1.66
5388097--5388150	22	2.5	22	100	0	108	37	18	18	25	1.94
5388298--5388328	6	5.2	6	92	0	53	16	19	32	32	1.94
5389533--5389563	15	2.1	15	93	0	53	61	6	3	29	1.37
5390037--5390069	14	2.2	15	89	10	50	81	3	3	12	0.91
5394072--5394120	14	3.5	14	77	0	62	51	6	2	40	1.38
5403172--5403212	17	2.3	18	87	4	57	43	0	0	56	0.99
5403172--5403212	9	4.7	9	79	14	50	43	0	0	56	0.99
5407787--5407825	18	2.1	18	85	4	51	33	0	0	66	0.92
5408187--5408232	23	2.0	22	87	4	65	45	0	0	54	0.99
5408196--5408237	9	5.2	8	81	18	52	40	0	0	59	0.97
5409764--5409834	36	2.0	36	83	5	90	32	7	7	53	1.55
5409834--5409877	23	2.0	21	86	8	61	52	0	0	47	1.00
5410375--5410415	2	20.5	2	100	0	82	51	0	0	48	1.00
5411382--5411430	12	4.5	11	73	21	50	32	0	0	67	0.91
5411443--5411476	13	2.6	13	85	0	50	44	0	2	52	1.16
5411463--5411512	20	2.7	20	84	9	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5411463--5411507	22	2.0	22	83	12	56	53	0	0	46	1.00
5412062--5412092	2	15.5	2	100	0	62	51	0	0	48	1.00
5412516--5412567	22	2.5	20	75	19	54	38	0	5	55	1.24
5413974--5414051	42	1.9	40	82	10	95	51	2	0	46	1.14
5419704--5419729	13	2.0	13	100	0	52	61	0	0	38	0.96
5419798--5419836	17	2.2	18	86	9	53	33	2	0	64	1.08
5421676--5421727	26	2.0	26	84	3	68	57	1	0	40	1.10
5423994--5424597	126	4.8	124	74	8	479	36	9	10	43	1.71
5428347--5428377	15	2.1	15	100	0	62	45	0	6	48	1.28
5430073--5430103	3	10.3	3	100	0	62	0	32	0	67	0.91
5431257--5431287	2	15.5	2	100	0	62	51	0	0	48	1.00
5441138--5441184	23	2.0	23	83	0	58	48	0	0	51	1.00
5441891--5441927	17	2.2	16	90	9	56	75	5	2	16	1.10
5443409--5443452	11	4.4	11	78	18	51	54	2	0	43	1.12
5443461--5443513	27	1.9	28	84	3	72	26	1	9	62	1.36
5443583--5443645	29	2.2	29	85	0	81	26	9	11	52	1.67
5445092--5445138	16	2.9	16	81	12	51	31	4	0	63	1.13
5445633--5445668	12	2.6	15	83	16	51	58	0	2	38	1.13
5446725--5446768	12	3.9	12	77	17	58	34	0	0	65	0.93
5454312--5454371	21	2.8	21	70	9	50	48	1	3	46	1.28
5454400--5454442	22	2.0	22	90	4	70	46	0	0	53	1.00
5454402--5454448	22	2.2	21	85	7	60	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5459796--5459844	22	2.1	24	82	17	59	51	2	0	46	1.12
5461537--5461801	132	2.0	132	96	0	485	40	16	18	24	1.91
5464736--5464765	14	2.1	14	93	0	51	66	26	3	3	1.23
5466560--5466596	2	18.5	2	94	0	65	48	0	2	48	1.15
5469808--5469846	20	2.0	20	85	9	55	53	2	5	38	1.37
5473176--5473743	286	2.0	285	93	1	969	31	17	11	38	1.86
5474766--5474809	23	1.9	23	85	0	61	31	13	6	47	1.69
5475914--5475978	18	3.4	18	78	15	67	52	13	4	29	1.61
5475925--5476009	20	4.1	20	71	22	77	48	15	4	31	1.65
5476251--5476317	21	3.2	20	81	10	89	56	10	4	28	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147