genome.fa.s445.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  138  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25171966--25172029	18	3.7	18	72	17	64	48	0	0	51	1.00
25172850--25172894	21	2.3	21	85	11	60	46	4	0	48	1.22
25188288--25188320	13	2.3	15	90	10	52	60	12	15	12	1.59
25194384--25194433	22	2.3	22	78	0	55	44	6	4	46	1.47
25196619--25196670	24	2.2	24	83	13	63	50	0	0	50	1.00
25196608--25196683	34	2.2	34	79	4	82	55	0	0	44	0.99
25197135--25197193	27	2.2	26	85	8	75	52	1	0	45	1.10
25198440--25198476	19	1.9	19	88	0	56	62	16	2	18	1.45
25199074--25199199	20	5.7	22	70	19	84	54	2	3	39	1.29
25199098--25199190	22	4.2	22	64	26	61	56	2	4	36	1.31
25199059--25199199	67	2.1	67	93	3	243	56	2	3	38	1.29
25200462--25200501	21	1.9	21	85	10	55	40	0	10	50	1.36
25200872--25200906	17	2.1	17	88	0	52	60	0	0	40	0.97
25200890--25200957	37	2.0	33	83	13	84	52	1	1	44	1.19
25201680--25201711	3	10.3	3	93	6	55	68	0	0	31	0.90
25202084--25202114	3	10.3	3	100	0	62	0	35	0	64	0.94
25204400--25204425	1	26.0	1	100	0	52	0	0	0	100	0.00
25205090--25205122	2	16.5	2	100	0	66	48	0	0	51	1.00
25216940--25216966	14	1.9	14	100	0	54	48	0	0	51	1.00
25217611--25217643	15	2.2	15	100	0	66	27	42	18	12	1.85
25219117--25219213	48	2.0	48	95	0	176	42	6	13	38	1.69
25234800--25235201	116	3.4	113	79	12	379	37	10	4	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25234800--25235226	60	7.3	58	80	12	432	37	9	5	47	1.60
25234758--25235220	176	2.7	172	83	11	504	37	10	5	47	1.61
25236340--25236685	45	8.0	44	81	5	327	44	19	12	23	1.85
25236341--25236603	86	3.0	88	82	3	289	45	19	12	22	1.83
25236590--25236689	40	2.5	40	93	1	164	41	19	12	28	1.86
25237325--25237383	22	2.7	22	83	0	73	38	20	5	35	1.75
25238906--25238930	13	1.9	13	100	0	50	8	12	0	80	0.92
25244469--25244895	60	7.2	58	85	7	531	35	9	5	49	1.58
25244469--25245083	119	5.1	117	79	11	609	35	9	5	49	1.58
25244876--25244913	14	2.6	14	87	4	58	42	0	5	52	1.24
25244763--25245022	132	2.0	128	85	8	355	36	8	5	49	1.56
25244874--25245082	60	3.6	56	75	14	192	35	9	5	50	1.57
25245096--25245135	16	2.6	15	88	7	62	85	0	2	12	0.71
25246080--25246117	3	12.7	3	100	0	76	68	0	0	31	0.90
25252991--25253034	19	2.2	20	88	4	63	40	2	0	56	1.11
25253051--25253089	18	2.1	19	86	13	55	51	2	0	46	1.14
25253052--25253090	20	2.0	20	85	10	53	51	2	0	46	1.14
25259554--25259591	2	19.0	2	89	10	60	50	0	2	47	1.15
25265127--25265170	7	6.3	7	85	15	56	38	2	0	59	1.10
25265125--25265171	13	3.5	13	80	16	51	40	2	0	57	1.11
25265605--25265663	21	2.8	22	89	7	79	52	0	0	47	1.00
25265613--25265663	21	2.5	21	93	3	86	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25265636--25265696	30	2.0	30	83	0	77	54	1	0	44	1.10
25266195--25266238	21	2.0	22	82	4	54	56	2	2	38	1.24
25270596--25270629	11	3.0	11	91	4	50	50	0	0	50	1.00
25274134--25274176	21	2.0	21	82	8	52	55	4	2	37	1.33
25274289--25274328	21	1.9	21	89	0	62	47	7	2	42	1.45
25275410--25275445	13	2.4	16	82	17	51	47	0	0	52	1.00
25278419--25278478	27	2.2	27	82	5	68	60	0	3	36	1.14
25280048--25280077	2	15.5	2	93	6	53	53	0	0	46	1.00
25286274--25286310	8	4.6	8	86	0	56	43	0	0	56	0.99
25286274--25286315	16	2.8	15	89	7	59	45	0	0	54	0.99
25286274--25286327	14	3.6	16	80	14	62	48	0	0	51	1.00
25287231--25287314	18	4.8	18	66	16	52	48	2	3	45	1.32
25287269--25287331	31	2.0	31	87	9	92	49	1	3	46	1.27
25289999--25290071	36	2.0	36	100	0	146	36	21	8	32	1.83
25293023--25293059	18	2.1	18	100	0	74	51	10	10	27	1.70
25295954--25295998	11	4.1	11	88	0	63	13	6	13	66	1.43
25298146--25298178	12	2.9	12	86	13	52	21	0	0	78	0.75
25298434--25298487	27	2.0	26	82	3	63	44	3	16	35	1.66
25298496--25298566	31	2.3	31	85	4	99	21	26	23	28	1.99
25298625--25298674	19	2.6	19	87	3	64	24	30	22	24	1.99
25298894--25298921	5	5.6	5	100	0	56	17	42	39	0	1.50
25298997--25299600	159	3.8	159	96	1	1088	28	14	17	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25305607--25305662	9	6.6	8	82	13	51	82	1	7	8	0.92
25305607--25305638	16	2.1	15	94	5	55	90	3	0	6	0.53
25305608--25305710	17	6.1	17	75	10	79	74	0	13	10	1.11
25305633--25305699	9	7.7	9	85	14	88	70	0	17	11	1.17
25306728--25307052	41	8.0	41	90	5	473	22	18	22	36	1.95
25306728--25307052	81	4.0	81	91	3	526	22	18	22	36	1.95
25306728--25307052	164	2.0	162	91	3	528	22	18	22	36	1.95
25307059--25307186	1	128.0	1	78	0	112	87	8	0	3	0.66
25307059--25307186	23	5.7	23	84	9	149	87	8	0	3	0.66
25307368--25307467	39	2.8	35	73	19	98	32	0	6	62	1.20
25307365--25307418	23	2.4	22	82	14	65	27	0	3	68	1.06
25307564--25307597	11	2.9	12	86	8	52	20	0	0	79	0.73
25308031--25308080	19	2.6	19	87	3	64	24	30	22	24	1.99
25308300--25308341	5	8.6	5	80	15	52	19	40	38	2	1.64
25308391--25309009	161	3.9	161	96	1	1090	28	14	17	39	1.89
25308391--25309009	317	1.9	318	94	2	1082	28	14	17	39	1.89
25310491--25310767	79	3.5	79	76	6	267	38	11	13	36	1.81
25310492--25310785	158	1.9	158	81	2	358	37	11	13	37	1.81
25311081--25311134	17	3.2	17	77	15	51	33	1	0	64	1.04
25314963--25315007	11	4.1	11	85	0	54	20	2	6	71	1.20
25315380--25315422	22	1.9	22	90	4	68	39	0	0	60	0.97
25315458--25315521	21	3.2	21	70	24	57	53	3	0	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25317836--25317906	29	2.4	29	83	2	97	47	11	8	32	1.69
25318050--25318228	79	2.3	78	80	7	184	37	10	14	37	1.80
25326817--25326869	18	2.9	19	78	10	58	45	0	1	52	1.11
25327710--25327748	17	2.2	18	86	4	53	82	2	5	10	0.93
25333577--25333612	19	1.9	19	88	5	56	22	16	27	33	1.95
25341952--25341978	4	6.8	4	100	0	54	51	22	0	25	1.48
25342626--25342781	78	2.0	78	98	0	303	32	17	12	36	1.88
25347100--25347129	2	15.0	2	92	0	51	50	3	0	46	1.18
25349592--25349630	20	2.0	20	85	10	53	61	2	2	33	1.23
25350424--25350450	14	1.9	14	100	0	54	33	0	0	66	0.92
25355626--25355671	21	2.2	21	88	0	65	50	6	8	34	1.59
25363659--25363702	19	2.3	19	88	0	61	22	4	25	47	1.70
25363667--25363704	19	2.0	19	100	0	76	21	5	21	52	1.66
25364976--25365047	31	2.3	32	85	2	92	45	0	2	51	1.15
25365146--25365196	20	2.7	19	81	6	59	62	0	0	37	0.95
25365316--25365374	29	2.0	29	86	0	82	20	10	30	38	1.86
25367916--25367969	24	2.3	24	84	9	67	42	1	0	55	1.10
25369138--25369178	6	6.7	6	85	2	55	53	0	0	46	1.00
25372253--25372294	21	2.0	21	90	4	68	23	16	28	30	1.96
25373847--25373889	17	2.5	17	80	0	50	30	34	11	23	1.90
25375659--25375742	31	2.6	31	76	14	89	52	1	1	45	1.16
25379455--25379505	20	2.5	21	78	9	61	27	0	7	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25380515--25380553	20	2.1	19	90	9	62	25	0	5	69	1.09
25381928--25381977	2	25.5	2	83	4	66	44	4	2	50	1.32
25387600--25387635	2	18.0	2	88	0	54	44	0	5	50	1.25
25390436--25390502	24	2.7	25	79	6	75	43	2	0	53	1.16
25400382--25400427	21	2.1	21	84	8	56	28	8	2	60	1.38
25402638--25402670	8	3.7	9	88	12	50	27	0	0	72	0.85
25413263--25413312	24	2.1	24	85	14	68	8	8	16	68	1.38
25419157--25419183	14	1.9	14	100	0	54	18	0	37	44	1.50
25426250--25426285	1	36.0	1	100	0	72	100	0	0	0	0.00
25429337--25429382	10	4.7	10	76	15	51	63	2	0	34	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147