genome.fa.s445.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  50  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9877634--9877761	66	1.9	66	80	9	145	45	10	6	37	1.65
9877950--9878013	24	2.7	24	85	4	76	45	1	12	40	1.51
9878350--9880062	886	2.0	847	95	3	2942	42	7	7	42	1.60
9880224--9880256	15	2.1	17	88	11	52	57	6	6	30	1.47
9879260--9880863	525	3.0	538	90	3	2448	41	6	7	44	1.60
9882436--9882517	22	3.7	22	76	0	83	45	2	9	42	1.50
9882416--9882523	44	2.5	44	78	3	110	49	4	8	37	1.54
9882551--9882593	22	2.0	22	86	9	61	51	2	9	37	1.47
9882648--9882738	22	4.2	21	76	10	67	49	9	5	35	1.59
9882807--9882943	22	6.4	22	75	6	111	50	4	7	37	1.50
9882746--9882948	44	4.7	42	73	8	140	48	5	9	36	1.59
9883004--9883116	22	5.2	22	71	6	59	46	11	6	36	1.65
9883134--9883175	22	1.9	22	90	0	66	42	2	9	45	1.49
9883516--9883561	22	2.1	22	91	0	74	50	4	8	36	1.53
9883578--9883614	18	1.9	18	89	10	56	43	0	13	43	1.44
9883834--9883884	22	2.3	22	83	6	68	58	7	5	27	1.49
9883870--9883921	22	2.4	20	79	17	59	44	3	7	44	1.51
9884000--9884147	44	3.4	43	80	3	152	42	8	10	38	1.70
9883941--9884119	22	8.1	22	74	8	134	44	9	8	37	1.67
9884004--9884147	66	2.2	66	81	5	166	42	9	10	38	1.71
9884004--9884200	44	4.5	44	76	7	121	43	8	10	38	1.68
9884487--9884584	21	4.7	21	78	7	92	44	8	7	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9886988--9887174	91	2.0	93	87	5	272	35	21	16	26	1.94
9891437--9891513	35	2.2	35	90	0	118	33	11	19	35	1.88
9894638--9894665	12	2.3	12	100	0	56	42	28	7	21	1.79
9894650--9894721	28	2.6	28	93	0	126	47	27	4	20	1.69
9901726--9901788	33	1.9	33	100	0	126	44	3	22	30	1.68
9901726--9901804	33	2.4	33	91	4	124	45	6	20	27	1.75
9902131--9902252	30	4.1	30	76	10	99	23	0	24	50	1.54
9902124--9902242	14	8.1	14	75	14	82	21	0	26	51	1.53
9902249--9902452	13	14.9	13	71	13	133	21	0	28	50	1.49
9902144--9902412	28	9.4	28	76	8	134	21	0	28	49	1.53
9902349--9902452	39	2.7	39	95	0	181	18	0	27	53	1.44
9904277--9904319	22	2.0	22	85	0	59	30	13	23	32	1.93
9904309--9904585	89	3.1	89	85	2	344	40	18	18	22	1.92
9904481--9904915	111	3.9	110	79	4	387	39	17	18	24	1.92
9904706--9905189	197	2.4	198	84	2	596	39	16	19	25	1.92
9904913--9905113	110	1.8	110	84	4	280	38	15	19	26	1.92
9905023--9905278	89	2.9	88	84	1	314	40	15	18	25	1.90
9905195--9905647	109	4.1	109	80	5	461	40	18	17	23	1.91
9905193--9905589	111	3.6	110	82	4	471	40	18	18	22	1.92
9905600--9905646	22	2.2	22	88	3	69	42	10	12	34	1.78
9907816--9907854	10	3.9	10	87	12	53	2	2	5	89	0.63
9908312--9908351	20	2.0	20	85	5	53	32	2	35	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9914404--9914474	16	4.8	14	77	13	70	15	0	29	54	1.41
9914404--9914495	14	6.3	15	76	17	86	14	1	32	52	1.49
9914404--9914474	30	2.4	30	88	4	99	15	0	29	54	1.41
9914476--9914554	28	2.8	28	84	3	106	22	0	32	44	1.53
9914524--9914589	16	4.3	16	69	11	57	31	0	21	46	1.51
9914444--9914554	55	1.9	57	83	7	145	20	0	31	46	1.57
9914840--9914909	24	2.8	25	79	14	74	30	1	1	67	1.08
9916191--9916219	15	1.9	15	100	0	58	44	0	0	55	0.99
9917486--9917801	161	2.0	161	85	3	431	32	9	15	42	1.79
9919250--9919326	34	2.3	34	79	4	84	33	20	14	31	1.93
9920998--9921029	16	2.0	16	100	0	64	18	12	37	31	1.88
9926744--9926790	19	2.5	20	79	10	62	21	6	23	48	1.72
9926873--9926915	15	2.8	15	82	3	50	25	2	20	51	1.60
9927418--9927442	13	1.9	13	100	0	50	16	0	0	84	0.63
9927545--9927590	20	2.2	22	85	11	62	30	4	10	54	1.55
9928269--9928302	14	2.5	14	90	4	52	0	23	0	76	0.79
9928268--9928318	20	2.5	20	87	6	68	1	21	0	76	0.88
9928404--9928447	20	2.2	20	88	11	65	4	0	18	77	0.94
9930721--9930791	28	2.6	28	77	6	74	42	1	7	49	1.38
9930817--9930856	17	2.3	17	86	4	53	45	7	0	47	1.31
9931066--9931094	10	3.0	10	95	5	51	68	0	0	31	0.89
9931175--9931249	29	2.6	29	82	6	89	42	4	8	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9931178--9931251	28	2.6	28	82	2	85	43	4	8	44	1.52
9932482--9932562	28	2.9	28	83	7	94	48	1	6	44	1.35
9932683--9932752	24	2.9	24	78	0	77	38	7	5	48	1.54
9933684--9933736	3	17.7	3	100	0	106	33	0	0	66	0.92
9933873--9933932	20	3.0	22	76	16	67	48	0	0	51	1.00
9933907--9934025	55	2.2	55	87	3	168	44	7	4	43	1.52
9934344--9934406	28	2.2	28	83	5	74	38	3	3	55	1.32
9935585--9935624	14	2.8	15	81	11	57	60	0	0	40	0.97
9935586--9935626	18	2.2	20	87	12	61	63	0	0	36	0.95
9935584--9935627	17	2.6	17	83	16	56	61	0	0	38	0.96
9938478--9938532	25	2.1	26	87	12	78	12	10	50	25	1.73
9938579--9938632	23	2.3	23	84	9	65	3	5	12	77	1.07
9938598--9938636	16	2.4	16	87	8	53	2	0	15	82	0.79
9938855--9939221	47	8.0	45	84	4	412	35	23	12	28	1.91
9938853--9939221	92	4.0	91	85	5	465	35	23	12	29	1.91
9938855--9939221	136	2.6	136	85	6	463	35	23	12	28	1.91
9939303--9939557	110	2.3	110	93	0	429	39	18	18	23	1.92
9939520--9939579	23	2.7	23	84	2	77	31	20	23	25	1.98
9939410--9939709	132	2.3	133	83	4	387	37	19	20	23	1.94
9939640--9939731	22	4.2	22	82	8	116	30	21	22	25	1.99
9939646--9939727	43	1.9	43	92	0	137	26	23	25	24	2.00
9940416--9940774	33	10.8	33	89	3	524	30	16	20	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9940416--9940776	168	2.2	167	89	4	559	30	16	20	31	1.95
9944212--9944385	45	4.0	42	78	8	159	43	20	13	21	1.87
9944356--9944470	43	2.7	43	85	6	144	34	22	15	26	1.94
9956024--9956082	6	9.8	6	85	10	59	72	8	1	16	1.17
9956022--9956125	11	8.7	11	72	17	66	70	5	0	23	1.15
9956024--9956083	18	3.4	17	84	9	75	73	8	1	16	1.16
9956087--9956125	20	2.0	20	90	10	62	69	0	0	30	0.89
9956802--9956964	3	53.0	3	78	15	147	65	1	2	30	1.16
9969472--9969557	22	3.9	22	85	0	100	45	5	2	46	1.40
9969530--9969571	17	2.3	18	80	19	52	40	7	2	50	1.43
9969656--9969752	22	4.4	21	85	5	95	39	5	7	48	1.53
9969700--9969758	22	2.4	26	70	24	63	44	6	3	45	1.47
9969693--9969807	59	2.0	60	82	6	146	40	6	5	46	1.53
9969861--9969899	11	3.5	11	83	13	53	30	0	15	53	1.42
9970337--9970400	22	2.9	22	85	0	92	42	7	7	42	1.63
9970340--9970486	44	3.3	44	78	9	122	40	5	8	45	1.58
9970374--9970486	22	5.1	21	78	12	95	38	5	7	47	1.55
9970352--9970491	66	2.1	66	78	5	149	40	6	7	45	1.59
9970383--9970456	11	6.8	10	76	14	58	40	2	6	50	1.43
9970387--9970486	22	4.5	22	83	0	119	38	4	9	49	1.53
9970484--9970629	22	6.6	22	80	3	123	41	9	4	44	1.56
9970374--9970609	118	2.0	118	80	8	266	40	7	5	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9970523--9971036	22	23.4	22	69	7	159	35	8	6	49	1.60
9970492--9971035	44	12.4	44	72	6	237	36	8	6	48	1.59
9970490--9970663	66	2.6	64	80	6	170	39	9	4	46	1.56
9970606--9970717	43	2.6	43	81	8	122	34	8	7	50	1.59
9971483--9971574	22	4.2	22	79	8	98	33	6	4	55	1.45
9971692--9971749	22	2.6	22	80	0	80	39	8	0	51	1.33
9971692--9971783	22	4.2	22	75	10	73	40	7	2	50	1.43
9973874--9973925	23	2.2	24	87	12	74	32	5	3	57	1.40
9974495--9974542	24	2.0	25	84	12	64	27	14	4	54	1.59
9974553--9974593	5	8.6	5	94	5	68	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147