genome.fa.s445.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  111  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19913807--19914783	539	1.8	543	84	3	1353	38	8	10	42	1.69
19914789--19918307	181	19.5	181	76	8	2561	39	8	9	41	1.69
19917302--19917335	17	2.1	16	89	10	52	47	2	5	44	1.42
19917672--19917996	170	1.9	170	84	5	442	40	8	8	43	1.65
19920246--19920277	10	3.2	10	95	0	55	31	15	9	43	1.78
19920537--19920583	20	2.3	20	96	0	85	44	6	4	44	1.49
19923326--19923377	26	1.9	26	84	7	68	46	17	7	28	1.75
19923335--19923386	26	1.9	27	88	7	79	42	19	9	28	1.82
19926303--19928754	181	13.5	181	74	6	979	40	7	9	42	1.66
19927070--19927108	12	3.6	12	74	25	50	33	10	0	56	1.33
19927068--19927118	20	2.5	20	93	0	84	33	7	1	56	1.39
19927103--19928846	898	1.9	894	80	6	1977	40	7	10	42	1.67
19927088--19928841	181	9.8	179	75	6	1220	39	7	9	42	1.67
19929231--19929559	182	1.8	181	81	4	412	43	6	9	40	1.63
19929758--19931273	180	8.4	180	76	7	1182	40	7	10	41	1.67
19931115--19931433	162	2.0	160	83	11	406	41	7	8	42	1.64
19931357--19931794	181	2.4	181	84	1	531	43	7	8	40	1.64
19929855--19939751	719	13.8	705	69	14	2088	40	8	9	41	1.67
19930291--19939751	538	17.5	520	69	14	2149	40	8	9	41	1.67
19932324--19933745	181	8.0	176	73	11	576	40	8	9	40	1.68
19932324--19933832	357	4.2	355	75	7	1177	40	8	9	41	1.67
19932513--19933823	181	7.3	180	76	6	999	40	8	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19933865--19939751	181	32.5	178	72	9	2085	40	8	9	41	1.67
19934952--19935087	67	2.1	65	88	2	200	44	8	10	37	1.68
19935019--19939744	181	26.3	181	76	7	3580	40	8	9	41	1.68
19935084--19939744	719	6.5	713	76	8	3525	40	8	9	41	1.68
19936514--19936562	16	2.8	18	75	15	57	46	12	8	32	1.71
19935056--19939751	538	8.7	536	75	8	2845	40	8	9	41	1.68
19939768--19940408	181	3.6	177	77	6	619	39	11	7	40	1.71
19940310--19940534	120	1.9	119	79	7	258	35	12	7	44	1.71
19940139--19940715	302	1.9	301	81	3	685	39	11	7	40	1.71
19940444--19944193	181	20.8	182	71	10	1323	40	9	8	40	1.68
19941155--19941187	17	2.0	17	88	5	50	39	6	0	54	1.25
19940568--19941230	347	1.9	348	82	5	822	39	10	9	39	1.73
19941788--19941853	35	1.9	34	96	3	123	43	6	7	42	1.57
19942605--19942648	16	2.6	17	78	7	54	36	9	9	45	1.68
19942633--19944153	180	8.5	181	75	7	626	40	9	8	41	1.68
19944250--19945695	181	8.0	180	75	5	1164	39	9	9	41	1.69
19943498--19944868	753	1.8	753	87	1	2073	40	9	8	40	1.69
19944250--19945695	537	2.7	534	76	8	1264	39	9	9	41	1.69
19962433--19962465	5	6.8	5	86	6	50	0	36	0	63	0.95
19967173--19967205	17	1.9	17	93	0	57	12	12	27	48	1.76
19981416--19981471	28	1.9	30	92	7	98	19	35	5	39	1.75
19993522--19993648	67	1.9	67	91	0	209	18	10	19	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20015368--20015397	11	2.6	11	94	5	51	40	0	0	60	0.97
20015714--20015772	27	2.2	27	93	0	100	35	16	33	13	1.88
20016661--20016700	20	2.0	20	95	0	71	50	2	0	47	1.14
20017295--20017450	52	3.0	52	88	1	224	25	24	9	41	1.85
20017475--20017514	11	3.6	11	86	0	62	52	32	0	15	1.43
20017475--20017517	22	2.0	22	100	0	86	48	32	0	18	1.48
20018106--20018152	21	2.2	21	89	10	78	78	6	0	14	0.93
20018118--20018176	10	5.4	11	71	20	52	77	11	0	10	0.98
20019636--20019686	16	3.2	16	80	0	66	49	29	1	19	1.60
20032149--20032831	109	6.3	109	88	2	980	20	19	13	47	1.82
20032149--20032831	217	3.1	218	89	1	1023	20	19	13	47	1.82
20032161--20032826	326	2.0	326	90	1	1050	20	19	13	47	1.82
20032809--20033308	105	4.8	105	89	0	716	22	18	12	47	1.82
20032978--20033138	52	3.1	51	64	18	132	21	15	15	47	1.82
20033752--20033808	7	8.3	7	74	18	57	73	12	1	12	1.17
20033759--20033819	21	3.1	20	86	6	81	75	11	1	11	1.12
20033749--20033805	28	2.0	28	86	6	80	75	10	1	12	1.12
20033787--20033817	13	2.3	14	94	5	55	77	12	0	9	0.99
20035255--20035324	28	2.4	30	80	7	81	50	32	0	17	1.46
20036430--20036468	19	2.1	19	100	0	78	30	28	15	25	1.96
20038008--20038071	30	2.1	30	88	5	94	57	3	7	31	1.43
20041666--20042040	193	2.0	191	90	3	601	37	14	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20042546--20042649	49	2.1	48	87	1	145	11	22	35	30	1.89
20043564--20043598	13	2.6	14	86	4	54	82	0	17	0	0.66
20043607--20043646	3	13.7	3	84	5	55	67	0	5	27	1.11
20043838--20044295	48	9.7	47	86	5	577	36	24	12	26	1.91
20043838--20044300	93	4.9	93	86	6	594	36	24	11	27	1.91
20045092--20045124	14	2.4	14	95	5	59	3	12	0	84	0.72
20045092--20045124	13	2.5	13	90	9	50	3	12	0	84	0.72
20050905--20051289	193	2.0	194	91	2	630	37	14	11	37	1.81
20051821--20051866	19	2.4	19	88	3	65	2	23	43	30	1.66
20052814--20052849	3	11.7	3	94	5	63	69	0	0	30	0.89
20060342--20060394	26	2.0	26	92	0	88	37	7	15	39	1.75
20063147--20063174	11	2.5	11	100	0	56	32	7	0	60	1.24
20063609--20063642	7	4.9	7	86	13	52	44	0	0	55	0.99
20066424--20066593	93	1.8	93	82	5	218	30	12	16	40	1.86
20076072--20076114	22	2.0	22	81	4	52	25	6	0	67	1.15
20077869--20077922	16	3.3	16	82	14	58	55	1	0	42	1.10
20077879--20077921	17	2.7	16	83	16	54	60	0	0	39	0.97
20080135--20080216	31	2.6	31	73	9	85	39	7	18	35	1.78
20080301--20080365	32	2.0	32	93	0	112	43	4	16	35	1.69
20088795--20088856	25	2.5	26	78	7	74	53	0	0	46	1.00
20088790--20088887	50	1.9	51	83	6	128	47	0	0	52	1.00
20088803--20088917	28	4.1	30	70	23	79	46	0	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20088788--20088882	26	3.8	24	73	17	79	48	0	0	51	1.00
20090080--20090122	22	2.0	22	82	13	54	60	4	0	34	1.17
20092360--20092393	15	2.3	15	100	0	68	44	23	5	26	1.76
20092558--20092621	30	2.1	30	91	5	103	57	3	7	31	1.43
20095353--20095406	22	2.5	22	76	11	65	20	1	3	74	1.07
20095364--20095406	18	2.4	17	77	11	50	18	2	4	74	1.10
20100306--20100356	25	2.0	25	85	11	68	60	1	3	33	1.26
20100669--20100720	27	1.9	27	96	0	95	38	3	0	57	1.17
20100680--20100741	27	2.3	27	83	8	74	40	1	1	56	1.19
20103856--20103880	2	12.5	2	100	0	50	48	0	0	52	1.00
20114635--20114663	2	14.5	2	100	0	58	0	0	48	51	1.00
20115273--20115383	54	2.1	54	92	0	186	55	6	17	20	1.63
20118699--20118766	26	2.6	25	78	15	84	48	1	2	47	1.26
20118761--20118833	18	4.0	19	73	18	66	53	1	0	45	1.09
20118933--20118977	17	2.8	16	80	9	56	48	6	0	44	1.29
20125613--20125911	104	2.9	105	80	10	325	41	11	15	31	1.83
20125634--20125924	154	1.9	153	83	6	383	41	11	14	31	1.82
20125652--20125927	50	5.4	50	81	6	286	42	11	14	31	1.82
20128311--20128347	19	1.9	19	89	10	58	29	18	16	35	1.93
20129210--20129288	31	2.5	31	83	4	88	12	1	37	48	1.50
20129393--20129431	19	2.1	19	90	9	62	15	2	35	46	1.60
20139372--20139403	14	2.3	14	94	0	55	34	15	15	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20139075--20139717	328	2.0	328	98	0	1241	36	19	19	25	1.95
20141684--20142084	142	2.8	141	76	10	406	31	12	14	41	1.84
20142174--20142261	34	2.6	33	87	3	113	48	37	1	12	1.48
20142234--20142441	7	30.9	7	78	5	171	43	34	1	19	1.62
20142174--20142441	21	13.3	21	73	9	184	45	35	1	17	1.59
20142196--20142440	7	36.3	7	72	13	79	45	34	2	18	1.61
20142174--20142455	14	21.2	13	74	12	180	44	36	1	17	1.59
20142844--20142885	22	2.0	22	85	4	59	50	9	2	38	1.48
20142860--20142920	28	2.2	28	85	5	88	52	4	6	36	1.49
20143685--20143736	21	2.5	20	78	9	59	57	5	23	13	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147