genome.fa.s445.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168270.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_5, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27802247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   

This is table  49  of  147  ( 17591 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9713554--9713601	16	2.9	16	81	6	51	12	4	6	77	1.11
9713608--9713672	17	3.9	16	76	8	58	23	3	3	70	1.15
9713569--9713715	11	13.0	11	68	21	65	18	3	3	74	1.09
9713689--9713728	20	2.0	21	95	5	73	22	2	0	75	0.93
9713745--9713988	121	2.0	122	92	1	411	44	6	13	34	1.71
9713737--9714001	61	4.4	59	82	8	311	46	7	13	33	1.70
9713739--9714001	120	2.2	119	88	2	409	46	7	13	33	1.70
9717889--9717921	9	3.7	9	95	0	57	87	0	12	0	0.53
9717865--9717905	12	3.3	12	89	3	55	82	2	9	4	0.89
9719162--9719582	42	10.1	42	89	4	615	23	15	23	37	1.93
9719589--9719631	18	2.4	18	88	7	61	88	9	0	2	0.60
9719726--9719766	20	2.0	21	90	4	66	26	29	24	19	1.98
9719820--9719859	9	4.7	9	84	15	50	25	0	7	67	1.16
9719838--9719954	37	3.2	37	73	20	93	32	0	5	62	1.17
9719820--9719949	45	2.9	45	72	22	114	31	0	6	62	1.20
9719836--9719953	8	16.6	7	69	23	52	33	0	5	61	1.18
9720574--9720620	20	2.4	20	85	3	60	27	31	14	25	1.95
9720881--9720930	17	2.9	17	81	3	55	12	4	6	78	1.08
9720943--9721002	17	3.6	16	75	8	57	23	3	3	70	1.18
9721019--9721058	20	2.0	21	95	5	73	22	2	0	75	0.93
9721067--9721396	61	5.4	61	82	9	399	46	6	12	33	1.69
9721067--9721392	120	2.7	119	84	6	433	46	7	12	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9722642--9722675	13	2.6	13	90	0	50	52	0	2	44	1.16
9723403--9723457	23	2.4	22	78	6	56	40	0	7	52	1.29
9724029--9724058	2	15.5	2	93	6	53	50	0	0	50	1.00
9727070--9727135	34	1.9	35	87	3	98	24	0	6	69	1.10
9729105--9729196	30	3.0	30	81	6	105	41	7	15	35	1.75
9729115--9729212	30	3.2	30	80	7	99	39	7	13	39	1.72
9729473--9729705	113	2.1	113	96	0	430	42	6	12	39	1.68
9732805--9732839	14	2.5	14	86	13	54	71	5	0	22	1.07
9732959--9732989	13	2.4	13	94	0	53	74	0	6	19	1.03
9733094--9733138	18	2.6	18	82	3	56	46	0	0	53	1.00
9744060--9744152	42	2.2	41	81	12	100	52	1	1	45	1.15
9744960--9744999	21	1.9	22	85	10	57	67	0	0	32	0.91
9746703--9746751	24	2.0	24	96	0	89	51	8	12	28	1.68
9747077--9747124	22	2.2	21	85	3	60	47	4	0	47	1.21
9748063--9748143	26	3.2	25	77	15	87	39	0	0	60	0.97
9748359--9748423	33	2.0	32	90	3	103	47	1	3	47	1.27
9748995--9749032	10	3.8	10	82	10	51	23	0	0	76	0.79
9758120--9758266	52	2.8	51	88	4	213	26	25	8	39	1.84
9758539--9758603	25	2.7	25	80	4	71	26	35	6	32	1.81
9758562--9758615	25	2.2	25	93	0	90	22	33	5	38	1.77
9758681--9758765	31	2.7	31	90	0	134	23	25	21	29	1.99
9759249--9759405	52	3.0	51	87	3	206	26	24	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9759429--9759460	11	2.9	11	100	0	64	53	28	0	18	1.45
9760561--9760611	25	2.0	25	96	0	93	37	0	29	33	1.58
9761721--9761908	91	2.0	93	87	6	274	34	21	15	28	1.94
9773946--9774018	22	3.3	22	76	14	69	60	0	2	36	1.11
9775743--9775771	14	2.1	14	100	0	58	34	6	13	44	1.71
9776432--9777079	49	13.1	49	84	4	768	27	13	22	36	1.91
9776432--9777079	99	6.6	99	86	4	783	27	13	22	36	1.91
9778979--9779022	21	2.2	20	83	4	52	27	2	2	68	1.14
9781814--9781958	52	2.8	51	84	6	175	27	26	7	37	1.83
9781862--9781970	52	2.1	52	85	10	143	28	22	9	39	1.85
9782233--9782297	25	2.7	25	80	4	71	26	40	6	27	1.80
9782256--9782317	25	2.5	25	84	7	74	24	38	3	33	1.71
9782873--9782977	52	2.0	52	86	0	147	25	28	9	36	1.87
9784171--9784215	23	2.0	23	95	0	81	22	11	44	22	1.84
9784484--9784867	154	2.5	155	81	6	440	42	5	8	42	1.59
9795457--9795495	2	19.5	2	83	0	51	48	7	0	43	1.31
9808407--9808438	12	2.7	12	95	0	55	34	9	15	40	1.80
9811585--9811624	19	2.0	20	90	4	64	45	5	0	50	1.23
9811858--9811893	16	2.3	17	81	18	51	55	0	0	44	0.99
9814945--9815250	94	3.5	90	79	15	334	36	20	13	29	1.91
9818296--9818329	2	17.0	2	87	0	50	44	0	5	50	1.26
9822941--9823016	23	3.5	22	72	16	68	32	1	2	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9822920--9822976	17	3.4	17	72	13	55	31	3	1	63	1.22
9822952--9823030	23	3.8	20	75	21	65	32	0	3	63	1.12
9822904--9823048	74	2.0	74	80	10	163	29	2	4	64	1.24
9824019--9824097	22	3.6	21	72	16	61	13	6	5	74	1.18
9824045--9824095	26	2.0	26	81	14	61	13	7	5	72	1.26
9824111--9824568	58	7.8	58	87	5	625	44	7	13	34	1.73
9824111--9824568	119	3.9	118	88	5	651	44	7	13	34	1.73
9824113--9824568	179	2.6	174	88	5	689	44	7	13	34	1.72
9828485--9828553	21	2.9	26	72	27	73	73	0	18	7	1.05
9828516--9828559	10	4.4	10	80	8	54	86	0	11	2	0.66
9828516--9828559	9	4.8	9	81	13	54	86	0	11	2	0.66
9828522--9828567	10	4.4	11	83	8	60	80	0	15	4	0.86
9828513--9828576	9	7.1	9	72	19	53	79	0	14	6	0.91
9828522--9828567	21	2.2	21	96	0	83	80	0	15	4	0.86
9830216--9830721	41	12.1	41	87	7	691	23	16	23	36	1.94
9830216--9830721	81	6.0	82	87	7	675	23	16	23	36	1.94
9830216--9830721	122	4.0	123	88	7	673	23	16	23	36	1.94
9830728--9830794	1	67.0	1	74	0	53	86	10	1	1	0.70
9830731--9830794	21	2.9	22	83	6	85	85	10	1	1	0.72
9830728--9830794	15	4.6	14	83	9	89	86	10	1	1	0.70
9830728--9830800	23	3.5	20	75	17	60	84	9	2	2	0.81
9831004--9831125	4	28.8	4	67	18	52	31	2	3	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9831046--9831124	23	3.8	20	75	21	65	32	0	3	63	1.12
9832012--9832060	25	1.9	25	84	12	64	26	4	4	65	1.29
9832163--9832614	58	7.7	56	78	14	409	44	7	13	34	1.72
9832163--9832614	59	7.7	58	80	13	473	44	7	13	34	1.72
9832644--9832671	6	4.7	6	100	0	56	14	0	14	71	1.15
9833162--9833270	30	3.6	30	80	7	114	38	6	17	37	1.75
9835247--9835283	18	2.0	19	94	5	67	32	8	0	59	1.27
9835896--9835924	12	2.4	12	100	0	58	51	10	24	13	1.72
9839877--9839911	14	2.5	14	86	13	54	71	5	0	22	1.07
9840031--9840061	13	2.4	13	94	0	53	74	0	6	19	1.03
9840166--9840210	18	2.6	18	82	3	56	46	0	0	53	1.00
9851156--9851248	42	2.2	41	81	12	100	52	1	1	45	1.15
9851345--9851375	13	2.3	14	94	5	55	67	6	0	25	1.14
9852058--9852097	21	1.9	22	85	10	57	67	0	0	32	0.91
9853785--9853833	24	2.0	24	92	0	80	51	10	10	28	1.68
9854154--9854201	22	2.2	21	85	3	60	47	4	0	47	1.21
9861064--9861130	28	2.3	30	82	10	84	50	1	4	43	1.31
9862317--9862367	14	3.7	14	78	19	54	47	1	0	50	1.12
9862729--9862768	21	1.9	21	85	10	55	35	0	2	62	1.09
9871676--9872025	175	2.0	175	94	1	621	29	22	18	29	1.97
9876237--9876901	22	30.1	22	70	12	247	48	6	9	35	1.62
9876866--9876915	11	4.6	11	76	11	50	42	2	12	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9876797--9876937	22	6.5	22	78	6	135	41	2	12	42	1.58
9876936--9877013	22	3.6	21	78	11	68	44	7	5	42	1.55
9876977--9877086	11	10.2	10	71	12	67	47	2	6	43	1.43
9876977--9877044	32	2.1	32	97	0	127	48	1	5	44	1.36
9876909--9877086	76	2.4	75	80	7	200	45	5	6	42	1.52
9877001--9877149	66	2.3	66	83	8	189	47	5	7	39	1.54
9877025--9877130	22	4.9	21	77	6	70	45	7	5	41	1.56
9877015--9877107	44	2.1	44	82	7	109	46	5	6	41	1.52
9877413--9877461	22	2.2	22	85	0	71	53	6	8	32	1.55
9877612--9877761	22	6.9	21	76	8	95	44	10	6	39	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147