genome.fa.s17.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  100  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31085730--31085991	83	3.2	81	79	8	228	26	15	21	36	1.93
31087262--31087489	34	7.4	28	70	19	95	47	17	1	32	1.58
31087277--31087503	9	24.7	9	67	21	98	47	18	1	32	1.59
31087288--31087377	21	4.3	21	71	17	80	50	15	1	33	1.52
31087291--31087379	12	8.2	12	68	25	56	50	14	1	33	1.50
31087473--31087503	16	1.9	16	100	0	62	45	22	0	32	1.53
31087880--31087933	19	2.9	18	83	10	65	38	1	0	59	1.08
31089324--31089348	9	2.8	9	100	0	50	24	0	0	76	0.80
31089396--31089682	43	6.7	41	81	6	286	27	19	29	24	1.98
31089396--31089682	85	3.4	85	84	1	353	27	19	29	24	1.98
31091202--31091265	23	2.9	22	79	11	76	45	39	3	12	1.58
31091212--31091264	21	2.4	21	84	6	70	47	39	0	13	1.43
31093336--31093369	16	2.1	16	94	0	59	47	0	0	52	1.00
31104762--31104817	27	2.1	26	83	9	69	55	1	5	37	1.33
31104760--31104817	26	2.2	25	80	14	64	55	1	5	37	1.33
31104787--31104840	21	2.8	19	83	8	65	61	0	1	37	1.07
31104806--31104871	29	2.3	29	84	5	89	63	1	0	34	1.04
31104824--31104860	19	1.9	19	88	0	56	70	2	0	27	1.01
31104806--31104871	10	6.8	10	70	17	50	63	1	0	34	1.04
31110951--31110979	6	4.8	6	100	0	58	65	17	0	17	1.27
31111062--31111128	9	7.4	9	89	0	107	23	11	23	40	1.88
31113772--31113830	30	1.9	31	82	3	75	27	20	3	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31113931--31114023	46	2.0	46	97	0	177	24	18	4	52	1.63
31114035--31114085	23	2.2	23	89	0	75	31	7	17	43	1.78
31131466--31131572	51	2.1	51	91	5	173	34	22	19	23	1.96
31134190--31134251	25	2.4	25	86	2	88	24	19	4	51	1.66
31134332--31134623	50	5.7	50	80	6	268	22	28	20	27	1.99
31135961--31136036	31	2.4	33	82	4	93	47	34	6	11	1.66
31139992--31140122	43	3.0	42	74	10	102	30	25	18	25	1.98
31141338--31141400	33	1.9	33	83	0	81	38	12	31	17	1.87
31141833--31141863	16	1.9	16	93	0	53	45	0	12	41	1.42
31142263--31142453	104	1.8	104	87	0	283	37	20	17	25	1.94
31144678--31144720	17	2.5	17	96	0	77	32	37	11	18	1.87
31149102--31149146	23	2.0	23	82	8	56	42	28	4	24	1.74
31157833--31158342	251	2.0	251	97	0	966	33	15	18	31	1.93
31164852--31165557	364	1.9	365	91	0	1155	30	24	25	19	1.98
31171407--31171837	69	6.3	69	75	4	305	38	24	20	16	1.92
31171407--31171797	138	2.8	138	78	1	347	38	24	20	16	1.93
31171408--31171803	206	1.9	207	81	3	485	38	25	20	16	1.93
31171788--31171893	53	2.0	53	88	0	158	39	18	20	20	1.92
31171842--31171977	69	2.0	69	82	2	166	39	22	22	16	1.92
31173935--31174741	403	2.0	403	93	0	1393	27	26	19	26	1.99
31181568--31181619	7	7.3	7	76	4	50	19	0	48	32	1.49
31181564--31181607	14	3.1	14	93	0	70	22	0	43	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31184258--31184316	25	2.4	25	86	8	77	49	0	1	49	1.11
31184258--31184319	24	2.6	24	80	7	72	48	0	1	50	1.10
31184763--31184825	9	6.6	10	77	15	62	26	1	0	71	0.95
31184762--31184825	19	3.4	19	80	6	76	26	1	0	71	0.94
31184764--31184845	20	4.2	20	78	12	73	25	2	1	70	1.06
31185653--31185715	26	2.5	26	87	7	85	33	1	1	63	1.13
31185838--31185891	26	2.1	25	82	3	63	37	1	9	51	1.45
31197662--31197729	30	2.3	30	84	0	91	60	0	1	38	1.06
31198041--31198108	25	2.7	26	77	8	79	39	2	1	55	1.24
31198297--31198514	90	2.4	91	86	3	305	36	9	19	34	1.84
31198297--31198541	90	2.7	87	80	9	251	33	8	19	38	1.83
31199801--31200328	288	1.8	288	82	6	672	34	14	11	39	1.82
31199635--31200724	292	3.7	294	75	8	767	36	14	12	37	1.83
31210986--31211132	57	2.5	56	76	11	136	33	20	24	21	1.97
31211197--31211331	67	2.0	67	92	0	225	22	18	31	28	1.97
31220321--31220463	47	3.2	47	68	22	151	46	14	10	28	1.78
31220304--31220463	88	1.8	87	100	0	311	46	14	10	28	1.76
31220368--31220419	13	3.8	13	81	16	61	55	9	7	26	1.59
31220380--31220413	16	2.1	17	94	5	61	55	8	5	29	1.54
31220368--31220422	29	1.9	28	96	3	101	56	9	7	27	1.57
31222481--31222981	44	11.3	44	78	6	460	30	24	14	30	1.95
31222486--31222981	265	1.9	266	89	4	777	30	24	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31222484--31223020	89	6.0	89	84	3	697	30	24	15	30	1.95
31223099--31223425	44	7.4	44	65	13	143	28	23	16	31	1.96
31223035--31223497	132	3.5	132	91	2	716	28	22	18	29	1.98
31224297--31224321	13	1.9	13	100	0	50	56	8	24	12	1.62
31227587--31227626	19	2.0	20	85	4	55	47	7	20	25	1.75
31230514--31230568	21	2.7	20	80	8	65	76	3	5	14	1.10
31237496--31237554	31	1.9	31	86	6	84	28	1	11	57	1.44
31237757--31237781	10	2.5	10	100	0	50	92	0	0	8	0.40
31238169--31238195	11	2.5	11	100	0	54	92	0	0	7	0.38
31238481--31238522	3	14.3	3	85	14	61	66	0	33	0	0.92
31238564--31238606	17	2.4	19	88	7	63	53	0	44	2	1.13
31240574--31240604	14	2.2	14	94	0	53	32	19	6	41	1.77
31241440--31241527	33	2.7	33	78	0	86	22	42	12	22	1.87
31241853--31241953	48	2.1	48	88	1	150	53	11	4	29	1.58
31245442--31245700	33	7.5	33	73	18	190	32	26	20	20	1.97
31245442--31245673	108	2.1	108	93	0	392	33	25	19	21	1.97
31253170--31253199	13	2.3	13	94	0	51	43	0	56	0	0.99
31265148--31265359	108	1.9	110	86	3	304	26	16	7	49	1.72
31265776--31265827	24	2.1	25	86	10	72	36	11	19	32	1.87
31266150--31266838	44	15.7	44	82	4	741	29	21	25	23	1.99
31266150--31266838	219	3.1	219	95	0	1202	29	21	25	23	1.99
31266150--31266838	175	3.9	176	84	4	797	29	21	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31267820--31268042	43	5.2	43	80	3	236	30	27	17	24	1.97
31267815--31268042	85	2.7	85	80	3	242	31	27	17	24	1.97
31273648--31273673	13	2.0	13	100	0	52	53	7	7	30	1.57
31273711--31274058	54	6.0	54	69	19	195	43	2	3	50	1.31
31273878--31273912	18	2.0	17	88	5	52	45	0	0	54	0.99
31273757--31274173	120	3.5	120	95	1	730	43	2	5	49	1.37
31274010--31274056	16	3.0	16	78	12	53	46	0	2	51	1.13
31273949--31274136	61	3.1	61	68	17	183	42	2	6	48	1.42
31274121--31274162	15	2.9	15	82	10	52	47	0	0	52	1.00
31274379--31274425	16	2.9	16	83	0	67	23	31	2	42	1.66
31278043--31278081	20	1.9	21	85	15	55	20	0	5	74	1.01
31278493--31278732	114	2.1	115	85	4	324	28	21	18	31	1.97
31283855--31283927	28	2.5	30	82	8	80	60	9	9	20	1.56
31286292--31286318	14	1.9	14	100	0	54	29	37	14	18	1.91
31291461--31291500	18	2.2	18	86	0	53	10	7	0	82	0.84
31292514--31292569	18	3.3	18	74	16	57	75	1	3	19	1.05
31307626--31307876	43	5.9	43	80	6	233	25	27	18	28	1.98
31307626--31307810	85	2.2	86	84	6	252	25	28	17	27	1.98
31307626--31307875	128	2.0	128	82	4	308	25	27	18	28	1.98
31308161--31308251	43	2.1	43	83	2	112	46	9	10	32	1.72
31311981--31312029	22	2.3	23	80	20	61	48	26	2	22	1.61
31312045--31312093	7	7.0	7	80	0	62	44	36	0	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31312045--31312098	14	3.9	14	90	0	81	46	33	0	20	1.51
31312143--31312186	7	6.3	7	80	19	56	43	38	0	18	1.50
31312145--31312186	15	2.9	15	86	6	61	45	38	0	16	1.48
31312222--31312332	7	15.7	7	73	9	64	48	28	2	19	1.63
31312563--31312657	40	2.3	40	94	1	163	60	2	2	35	1.21
31312809--31312920	39	2.8	40	82	2	136	22	23	19	34	1.96
31314860--31315041	86	2.1	86	88	3	269	25	30	18	25	1.98
31314860--31315041	43	4.3	42	88	6	242	25	30	18	25	1.98
31317585--31317655	21	3.4	21	90	0	115	1	49	15	33	1.54
31319413--31319570	25	6.3	25	77	11	130	30	2	18	48	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173