genome.fa.s17.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  104  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32192812--32192996	32	5.8	32	84	0	226	37	21	20	21	1.95
32192999--32193052	26	2.1	26	85	0	72	35	27	24	12	1.92
32193172--32193266	24	4.0	24	83	0	91	47	20	7	25	1.75
32193206--32193278	24	3.0	24	89	0	101	43	20	6	28	1.77
32193180--32193276	48	2.0	48	80	7	108	46	20	6	26	1.74
32193299--32193492	27	7.2	27	69	16	107	24	20	18	37	1.94
32193295--32193492	81	2.5	81	82	5	249	24	20	18	36	1.94
32193299--32193492	54	3.6	54	76	6	153	24	20	18	37	1.94
32194536--32194622	41	2.1	41	89	0	129	57	2	25	14	1.50
32194874--32194939	24	2.7	25	77	11	66	15	48	4	31	1.65
32196398--32196448	24	2.1	24	92	7	86	21	27	0	50	1.48
32196389--32196448	24	2.8	20	73	26	68	21	30	0	48	1.51
32201449--32201529	32	2.5	33	87	2	119	24	7	54	13	1.65
32204652--32204682	15	2.1	15	100	0	62	25	0	0	74	0.82
32204654--32204684	3	10.3	3	92	0	53	29	0	0	70	0.87
32215484--32215644	82	2.0	82	88	0	241	22	26	14	35	1.94
32215481--32215650	41	4.1	41	85	0	196	22	25	15	35	1.94
32230178--32230203	2	13.0	2	100	0	52	50	50	0	0	1.00
32230273--32230318	23	2.0	23	83	8	58	32	8	15	43	1.77
32235815--32236059	126	1.9	126	96	0	454	22	7	25	44	1.79
32243195--32243486	40	7.3	40	85	1	327	22	31	15	30	1.95
32243199--32243517	80	4.0	80	85	0	370	21	30	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32243199--32243490	120	2.4	120	83	1	361	21	31	16	30	1.95
32246382--32246462	30	2.7	30	90	0	126	18	33	28	19	1.96
32248490--32248520	9	3.4	9	100	0	62	67	0	22	9	1.19
32250489--32250550	26	2.4	26	88	0	88	33	12	14	38	1.84
32250688--32250718	6	5.2	6	100	0	62	51	16	16	16	1.77
32262415--32262471	24	2.3	24	82	8	62	70	3	19	7	1.26
32274987--32275315	171	1.9	171	90	0	523	26	15	27	31	1.96
32277325--32277381	27	2.2	26	78	9	64	19	5	35	40	1.74
32287572--32287680	43	2.5	43	72	16	109	29	25	20	24	1.99
32287754--32287798	22	2.0	22	100	0	90	22	20	31	26	1.98
32287911--32288277	43	8.6	43	83	1	416	31	30	16	21	1.95
32289033--32289084	23	2.3	23	79	0	59	34	7	30	26	1.85
32292651--32292709	10	5.7	10	78	11	57	44	5	0	50	1.24
32292678--32292710	12	2.9	12	86	13	52	42	6	0	51	1.26
32293447--32293498	21	2.5	20	78	12	59	36	38	0	25	1.56
32294317--32294579	41	6.4	41	89	0	400	28	25	23	23	2.00
32295794--32295833	21	1.9	21	85	10	55	35	15	0	50	1.44
32295818--32295853	18	2.0	18	89	10	56	38	19	5	36	1.75
32302124--32302164	20	2.0	22	85	9	59	56	0	7	36	1.27
32302808--32302869	30	2.1	30	87	6	90	48	8	9	33	1.65
32313512--32313601	38	2.4	38	88	0	135	41	27	15	15	1.88
32316735--32316759	11	2.3	11	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32327358--32327522	40	4.1	40	81	3	170	29	20	22	27	1.98
32338684--32338957	7	38.6	7	66	15	53	22	1	30	45	1.59
32338709--32338895	86	2.2	85	96	1	338	24	1	29	44	1.60
32338684--32338957	14	19.3	14	66	16	73	22	1	30	45	1.59
32341427--32341568	43	3.3	43	89	0	221	23	14	25	35	1.93
32343419--32343500	25	3.3	25	77	0	101	32	18	25	23	1.97
32343534--32343673	25	5.6	25	68	16	94	32	22	25	20	1.98
32343520--32343680	25	6.5	25	67	16	86	32	21	25	20	1.98
32344160--32344198	5	7.6	5	82	5	51	41	17	0	41	1.50
32351362--32351451	25	3.7	23	71	12	72	34	15	27	22	1.94
32351539--32351622	25	3.3	25	78	6	89	32	23	25	19	1.97
32351550--32351623	26	2.9	26	80	8	80	35	22	21	20	1.96
32357649--32357675	6	4.5	6	100	0	54	85	0	0	14	0.61
32364336--32364376	4	10.2	4	94	0	73	73	26	0	0	0.84
32370341--32370390	27	1.9	25	84	8	64	44	4	28	24	1.72
32374360--32374471	9	12.6	9	75	16	74	66	1	1	30	1.12
32374360--32374471	18	6.3	18	72	17	90	66	1	1	30	1.12
32374360--32374471	26	4.2	25	73	16	91	66	1	1	30	1.12
32374943--32375021	20	4.0	20	72	20	67	31	3	2	62	1.27
32374917--32375015	10	10.3	10	67	23	52	33	4	2	60	1.27
32374964--32375014	9	5.4	9	82	15	59	31	1	1	64	1.15
32374900--32375022	29	4.5	27	73	16	87	31	4	1	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32386605--32386639	17	1.9	19	88	11	56	25	11	5	57	1.56
32388333--32388371	21	1.9	20	89	5	60	41	2	20	35	1.66
32396715--32396883	29	5.9	28	82	6	187	37	13	28	21	1.90
32396715--32396882	88	1.9	86	85	4	230	37	13	28	20	1.90
32409534--32409564	15	2.1	15	100	0	62	22	32	6	38	1.80
32412908--32412937	15	1.9	16	93	6	53	23	43	6	26	1.78
32417792--32417858	30	2.2	31	84	7	84	77	2	5	13	1.07
32437152--32437209	15	3.9	15	78	13	57	79	5	6	8	1.06
32438131--32438176	23	2.0	24	83	12	60	58	8	23	8	1.56
32438531--32438589	5	12.2	5	73	20	54	76	0	3	20	0.93
32438531--32438589	9	6.1	9	79	16	57	76	0	3	20	0.93
32442137--32442297	86	1.9	86	84	2	216	39	24	5	30	1.78
32442123--32442461	23	15.0	23	74	11	238	41	23	5	30	1.76
32445078--32445128	23	2.2	24	89	3	77	13	7	21	56	1.62
32446796--32446829	14	2.4	14	90	0	50	41	29	2	26	1.70
32447261--32447458	41	4.8	41	84	0	243	28	28	21	21	1.99
32453889--32454064	42	4.2	42	75	8	153	42	18	15	24	1.88
32453954--32454063	41	2.6	42	83	7	143	43	16	15	24	1.86
32462808--32462902	49	1.9	49	91	0	154	30	33	11	24	1.91
32471346--32471405	13	4.7	12	76	15	50	46	0	1	51	1.10
32472260--32472304	22	2.1	22	88	12	67	40	0	0	60	0.97
32482901--32482943	8	5.5	8	91	2	70	58	23	18	0	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32482901--32482944	16	2.8	16	96	0	79	59	22	18	0	1.38
32483180--32483246	27	2.5	27	87	0	107	44	19	13	22	1.85
32485007--32485098	46	2.0	46	100	0	184	30	8	10	50	1.68
32485379--32485411	17	2.0	17	88	5	50	63	15	6	15	1.49
32486973--32487011	17	2.3	17	83	12	53	33	0	10	56	1.33
32491501--32491576	40	1.9	40	100	0	152	63	2	10	23	1.39
32491554--32491591	19	2.0	19	100	0	76	47	5	15	31	1.68
32496485--32496679	23	8.5	23	75	9	121	30	4	24	40	1.75
32497957--32498072	22	5.0	23	70	19	89	38	16	12	31	1.86
32497979--32498059	23	3.4	25	68	16	80	35	16	13	34	1.88
32497949--32498069	47	2.6	45	86	8	163	38	17	12	32	1.87
32497944--32498066	24	5.2	24	70	8	83	37	17	13	31	1.88
32498291--32498339	15	3.2	15	85	8	55	48	20	0	30	1.50
32498994--32499116	43	2.9	43	80	12	144	30	26	20	22	1.98
32505622--32505925	24	13.0	22	71	15	202	40	15	11	33	1.83
32505610--32505925	47	6.7	47	92	1	492	39	15	11	32	1.84
32506160--32506194	15	2.3	15	90	9	54	51	22	0	25	1.48
32506848--32506970	43	2.9	43	80	12	144	30	26	20	22	1.98
32511666--32511875	75	2.8	75	87	5	291	42	7	6	43	1.58
32511737--32511784	7	6.9	7	83	11	55	52	4	0	43	1.20
32514342--32514392	23	2.2	23	79	6	59	19	11	19	49	1.79
32519914--32519984	20	3.5	20	71	7	72	59	0	1	39	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32519925--32519995	12	6.6	12	78	18	59	57	0	2	39	1.13
32519914--32520036	11	11.9	11	72	20	79	59	0	2	38	1.11
32519938--32519971	17	2.0	17	88	0	50	64	0	0	35	0.94
32519961--32520025	30	2.1	31	85	2	87	61	0	4	33	1.16
32519920--32520053	41	3.3	40	88	6	209	63	0	2	34	1.07
32521085--32521135	23	2.2	23	86	6	68	17	7	23	50	1.72
32521803--32521854	24	2.2	24	85	0	68	51	9	3	34	1.53
32523718--32523769	24	2.2	24	85	0	68	57	5	1	34	1.33
32530480--32530541	26	2.4	26	88	0	88	32	11	16	40	1.83
32539547--32539632	30	2.9	31	82	6	106	37	9	25	27	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173