genome.fa.s17.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  113  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35136701--35136744	19	2.2	20	92	4	72	36	4	6	52	1.49
35139569--35139609	19	2.2	19	87	12	59	58	2	0	39	1.11
35146342--35146734	69	5.7	69	82	3	418	36	25	17	21	1.94
35146374--35146727	137	2.6	138	83	4	421	36	27	16	19	1.94
35146759--35146904	58	2.5	58	80	1	168	32	18	10	39	1.84
35150729--35151097	101	3.6	104	91	2	584	18	19	30	31	1.96
35153541--35153582	22	1.9	22	90	0	66	16	26	16	40	1.90
35167277--35167598	162	2.0	162	95	0	572	42	21	12	23	1.86
35170763--35170802	21	1.9	21	85	10	55	32	0	12	55	1.38
35171479--35171527	25	2.0	26	84	8	66	48	10	0	40	1.37
35171604--35171646	20	2.2	20	87	8	61	55	2	2	39	1.25
35171638--35171674	19	1.9	19	88	0	56	43	0	5	51	1.24
35181319--35181454	40	3.5	38	76	9	123	26	16	24	32	1.96
35184279--35184340	30	2.1	29	84	3	79	40	1	25	32	1.66
35183895--35184776	438	2.0	438	100	0	1764	35	10	19	34	1.87
35184717--35184774	30	1.9	30	85	0	80	41	1	22	34	1.64
35184987--35185017	13	2.4	13	94	0	53	32	0	12	54	1.38
35185112--35185354	50	4.8	50	92	0	396	26	23	30	20	1.98
35195559--35195639	40	2.0	41	90	2	128	45	9	6	38	1.62
35197197--35197319	47	2.6	46	80	2	147	39	6	15	38	1.73
35197353--35197559	47	4.4	47	80	3	238	38	6	15	39	1.74
35197190--35197476	159	1.8	157	92	3	486	40	6	14	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35197350--35197572	92	2.4	94	93	3	378	39	6	14	39	1.72
35197676--35197873	41	4.8	41	87	0	261	19	19	29	32	1.96
35198960--35198984	4	6.2	4	100	0	50	72	0	0	28	0.86
35203101--35203131	12	2.5	13	94	5	55	41	12	0	45	1.42
35211580--35211745	45	3.7	45	81	9	162	43	15	16	25	1.86
35212946--35212989	18	2.4	19	84	3	54	31	4	2	61	1.28
35229929--35229963	16	2.2	16	90	10	54	74	2	5	17	1.14
35240748--35240826	36	2.2	36	86	0	104	35	35	17	11	1.86
35245877--35245937	17	3.6	17	86	0	86	42	14	3	39	1.62
35246918--35247062	31	4.5	30	73	13	94	44	12	4	38	1.61
35249364--35249402	13	3.1	13	88	3	53	12	17	0	69	1.19
35249368--35249408	13	3.2	13	83	13	50	12	17	0	70	1.16
35249722--35249746	8	3.1	8	100	0	50	88	0	0	12	0.53
35252272--35252483	68	3.1	69	73	7	198	33	24	16	25	1.96
35252272--35252541	136	2.0	136	81	7	316	34	24	15	24	1.95
35260397--35260504	51	2.1	52	81	8	123	37	3	14	43	1.64
35270708--35270737	13	2.3	13	100	0	60	30	10	20	40	1.85
35280163--35280539	125	3.0	124	92	0	610	29	16	23	31	1.96
35283753--35285466	23	76.5	22	73	13	1125	25	0	24	48	1.55
35283754--35285464	45	38.1	45	76	12	1193	25	0	24	48	1.55
35284080--35284229	74	2.0	73	88	8	225	26	0	24	50	1.50
35283796--35285456	68	24.3	71	77	14	624	25	0	24	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35284609--35285108	191	2.7	186	85	8	640	26	0	23	49	1.52
35286624--35286649	7	3.7	7	100	0	52	57	15	0	26	1.38
35286819--35286856	20	1.9	20	84	10	51	55	7	2	34	1.43
35287843--35287908	11	5.9	11	76	16	57	42	1	30	25	1.64
35287843--35287911	22	3.0	23	76	18	72	42	1	31	24	1.64
35287861--35287907	11	4.2	11	86	2	58	42	2	31	23	1.66
35288538--35288640	50	2.1	50	94	0	179	33	2	5	58	1.37
35288944--35288995	26	1.9	28	85	14	74	65	0	0	34	0.93
35292943--35292975	3	11.0	3	100	0	66	66	0	0	33	0.92
35293547--35293578	15	2.1	16	94	5	57	53	0	15	31	1.43
35293833--35293899	22	3.0	22	82	6	73	40	16	5	37	1.73
35293843--35293907	22	3.0	22	88	4	87	36	18	7	36	1.80
35295943--35295976	10	3.1	11	87	12	52	17	35	0	47	1.48
35295962--35296017	22	2.5	22	94	2	94	28	30	0	41	1.57
35297196--35297220	7	3.6	7	100	0	50	28	0	12	60	1.32
35297867--35297901	18	1.9	18	94	0	61	25	31	8	34	1.86
35298378--35298515	25	5.7	25	74	14	146	44	0	13	41	1.49
35298312--35298492	44	4.0	44	74	13	159	41	0	12	45	1.45
35298403--35298506	35	3.0	35	64	16	88	42	0	13	43	1.50
35298531--35298931	29	14.4	29	76	18	408	44	27	0	27	1.56
35298511--35298599	23	3.6	23	68	16	70	46	26	0	26	1.53
35298530--35298725	64	3.1	63	88	8	285	43	29	0	26	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35298675--35298960	51	5.6	50	85	8	396	44	26	0	28	1.59
35298704--35298749	22	2.2	21	85	11	60	43	28	2	26	1.66
35298645--35298954	74	4.1	75	71	23	211	45	26	0	27	1.57
35298748--35298790	23	2.0	20	95	4	59	48	18	0	32	1.48
35298807--35298852	22	2.2	20	88	11	67	45	28	0	26	1.54
35298851--35298893	23	2.0	20	95	4	59	48	20	0	30	1.50
35298910--35298955	22	2.2	20	88	11	67	45	28	0	26	1.54
35298957--35299174	116	1.9	116	95	0	391	38	8	8	44	1.65
35299150--35299191	17	2.4	18	80	4	50	42	9	2	45	1.49
35302184--35302562	125	3.0	125	88	2	580	32	22	15	29	1.94
35314965--35315189	45	5.0	45	84	3	285	27	15	24	33	1.95
35320016--35320057	19	2.2	19	86	0	57	38	0	47	14	1.44
35320022--35320067	15	3.0	16	82	17	62	36	0	47	15	1.45
35323343--35323378	18	2.0	18	100	0	72	27	5	27	38	1.79
35325076--35325141	29	2.3	29	100	0	132	37	7	19	34	1.80
35330118--35330172	21	2.6	21	82	0	65	21	34	20	23	1.97
35340251--35340310	25	2.4	25	88	0	84	30	23	23	23	1.99
35340263--35340327	25	2.6	25	85	2	78	35	16	26	21	1.95
35340423--35340447	13	1.9	13	100	0	50	8	0	24	68	1.16
35342013--35342363	41	8.6	40	90	4	483	27	18	23	30	1.98
35342013--35342363	163	2.1	163	89	4	530	27	18	23	30	1.98
35348220--35348244	13	1.9	13	100	0	50	8	0	24	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35349813--35350166	41	8.6	40	86	9	457	27	18	23	30	1.98
35349813--35350166	82	4.3	83	91	3	517	27	18	23	30	1.98
35349813--35350122	123	2.5	123	95	2	543	26	18	23	31	1.97
35349813--35350164	123	2.9	122	91	4	541	27	18	23	30	1.98
35353651--35353694	18	2.5	18	81	3	54	65	4	4	25	1.30
35355935--35355997	22	2.8	22	75	2	63	34	22	22	20	1.96
35358172--35358207	18	1.9	18	88	5	54	38	0	2	58	1.13
35358371--35358569	109	1.8	108	80	8	242	38	7	7	47	1.59
35358842--35358875	14	2.5	13	95	4	59	67	0	0	32	0.91
35358918--35358959	19	2.2	20	86	4	59	50	2	0	47	1.14
35369235--35369296	31	2.0	31	100	0	124	41	16	9	32	1.80
35374829--35374897	20	3.4	20	70	9	68	1	13	11	73	1.15
35374816--35374898	40	2.1	40	90	4	132	1	12	13	73	1.16
35375410--35375502	31	3.0	31	98	0	177	40	16	10	32	1.82
35380377--35380681	79	3.9	77	87	4	416	40	11	16	31	1.84
35380382--35380681	158	1.9	157	89	3	469	41	11	15	32	1.83
35382949--35383032	44	1.9	43	85	2	114	33	29	15	21	1.94
35388907--35388995	45	2.0	45	97	0	169	15	30	16	37	1.91
35393008--35393106	50	2.0	50	97	0	189	18	11	24	46	1.81
35400011--35400047	14	2.6	15	83	12	51	32	5	5	56	1.45
35403502--35403539	18	2.1	19	95	5	69	55	0	23	21	1.44
35408204--35408243	15	2.7	15	100	0	80	22	30	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35413725--35413848	45	2.8	45	82	2	133	25	20	13	39	1.90
35416723--35416761	20	2.1	18	86	13	53	23	23	15	38	1.92
35419550--35419601	25	2.0	26	82	10	63	53	1	11	32	1.48
35420227--35420259	3	11.3	3	93	6	59	69	0	0	30	0.88
35425559--35425668	41	2.7	41	88	0	157	21	29	21	27	1.99
35427793--35427844	11	4.6	11	90	2	77	23	32	1	42	1.65
35427793--35427847	22	2.4	23	90	6	94	23	30	1	43	1.64
35427792--35427866	33	2.2	33	81	9	89	24	30	1	44	1.62
35427792--35427868	11	6.9	11	74	21	72	24	29	1	44	1.62
35427828--35427927	51	2.0	51	86	7	141	26	26	3	45	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173