genome.fa.s17.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  96  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30041952--30041991	18	2.1	18	90	9	62	55	5	0	40	1.22
30043034--30043073	18	2.3	17	91	4	62	5	37	0	57	1.21
30043207--30043237	9	3.4	9	95	0	53	25	67	6	0	1.14
30049401--30049444	18	2.5	18	85	10	56	13	9	11	65	1.46
30057849--30057878	15	2.0	15	93	0	51	30	0	13	56	1.37
30058007--30058046	21	1.9	21	84	0	53	45	20	12	22	1.84
30058895--30058994	49	2.0	49	92	0	164	42	21	11	26	1.85
30067430--30067591	41	4.0	41	83	7	168	33	27	19	20	1.96
30067430--30067587	82	1.9	82	83	5	203	32	27	19	20	1.97
30068487--30068511	8	3.1	8	100	0	50	24	36	12	28	1.91
30086984--30087018	18	1.9	18	94	0	61	34	14	5	45	1.68
30087593--30087709	39	3.0	39	79	8	123	38	19	20	21	1.94
30087761--30088017	41	6.3	41	80	3	259	20	20	26	32	1.97
30087818--30088002	81	2.3	82	82	2	203	22	18	25	32	1.97
30087767--30088018	122	2.1	122	81	6	296	21	20	25	32	1.97
30087952--30088039	41	2.1	41	80	0	95	23	21	20	34	1.97
30092390--30092596	86	2.4	84	81	7	236	22	17	29	29	1.97
30092408--30092598	43	4.4	43	78	5	197	22	17	29	29	1.97
30094480--30094772	43	6.9	43	77	5	229	30	23	19	26	1.98
30094471--30094684	85	2.5	85	84	5	256	32	24	19	23	1.97
30094480--30094788	42	7.3	42	77	4	226	30	24	19	25	1.98
30095156--30095206	21	2.4	21	86	0	75	1	45	17	35	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30100474--30100508	15	2.2	16	85	15	54	48	11	0	40	1.39
30100480--30100508	15	1.9	15	100	0	58	48	13	0	37	1.43
30101132--30101169	20	1.9	20	94	0	67	57	5	2	34	1.35
30101370--30101405	15	2.3	16	90	4	56	36	2	0	61	1.11
30101541--30101596	7	8.0	7	79	0	58	46	39	0	14	1.44
30101541--30101594	14	3.9	14	80	0	72	48	37	0	14	1.45
30101542--30101596	28	2.0	28	96	0	101	47	40	0	12	1.42
30101675--30101750	21	3.6	21	73	16	75	52	30	0	17	1.44
30101675--30101717	22	2.0	21	90	4	68	53	30	0	16	1.43
30102369--30102760	114	3.4	114	91	1	608	24	20	19	35	1.95
30108657--30108721	12	5.6	11	74	15	51	27	6	3	63	1.33
30118288--30118315	3	9.3	3	100	0	56	67	0	0	32	0.91
30127132--30127167	6	6.0	6	93	0	63	50	13	0	36	1.43
30129826--30129865	6	6.8	6	82	5	55	47	0	2	50	1.14
30129836--30129870	18	1.9	18	94	0	61	48	0	2	48	1.16
30130011--30130045	18	2.0	17	94	5	61	40	0	2	57	1.14
30130336--30130405	27	2.5	29	84	9	92	51	8	1	38	1.41
30130343--30130403	14	4.6	13	78	11	70	54	8	1	36	1.40
30131985--30132044	30	2.0	30	100	0	120	56	0	6	36	1.26
30132721--30132767	17	2.8	16	81	18	51	48	2	2	46	1.25
30146953--30147039	36	2.4	35	76	12	86	40	18	8	33	1.80
30147245--30147344	41	2.4	41	85	5	121	25	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30149980--30150037	20	3.0	19	76	19	57	43	0	1	55	1.10
30150766--30150842	31	2.4	31	89	4	109	51	15	3	28	1.61
30153112--30153164	26	2.0	26	85	7	72	30	0	1	67	1.01
30156088--30156133	9	5.0	9	84	5	65	32	0	0	67	0.91
30156078--30156137	28	2.1	28	78	6	77	40	0	0	60	0.97
30156103--30156142	18	2.2	18	86	0	53	40	0	0	60	0.97
30159974--30159999	7	3.7	7	100	0	52	23	0	0	76	0.78
30162145--30162184	20	2.0	20	90	0	62	50	12	10	27	1.72
30168497--30168530	17	1.9	18	88	5	52	64	0	20	14	1.28
30168474--30168604	52	2.5	52	86	2	183	56	6	12	23	1.61
30185004--30185047	22	2.0	22	91	8	72	31	0	2	65	1.05
30185606--30185664	31	1.9	31	86	6	84	44	0	3	52	1.17
30187464--30187547	21	3.9	20	84	6	78	54	2	0	42	1.13
30187495--30187549	7	8.2	6	92	7	56	52	1	0	45	1.11
30187480--30187548	14	4.9	14	86	12	97	55	1	0	43	1.08
30187480--30187548	21	3.3	21	86	11	97	55	1	0	43	1.08
30187562--30187608	14	3.5	13	77	13	51	38	2	0	59	1.09
30193822--30193898	25	2.7	30	84	13	110	45	6	23	24	1.76
30198481--30198566	30	3.0	29	85	12	117	43	6	24	25	1.79
30198479--30198567	25	3.1	30	85	12	125	41	6	25	25	1.80
30208600--30208634	2	18.5	2	88	11	56	54	45	0	0	0.99
30220643--30220674	16	2.0	16	100	0	64	25	12	0	62	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30229223--30229276	23	2.3	23	87	0	81	38	9	25	25	1.86
30237144--30237488	41	8.4	41	82	0	321	24	26	13	35	1.93
30237144--30237482	123	2.8	122	79	2	383	24	26	13	35	1.93
30237166--30237473	82	3.8	82	84	0	355	22	26	13	37	1.92
30242572--30242648	32	2.4	32	97	2	147	45	2	23	28	1.66
30247157--30247195	20	2.0	20	89	0	60	46	12	12	28	1.79
30251733--30251770	17	2.2	17	86	13	51	26	13	0	60	1.33
30253131--30253169	20	2.0	20	85	10	53	46	10	12	30	1.75
30255458--30255519	31	2.0	31	100	0	124	41	16	9	32	1.80
30261067--30261112	21	2.2	20	92	7	83	0	15	13	71	1.14
30261657--30261718	31	2.0	31	96	0	115	40	16	11	32	1.83
30263381--30263534	43	3.6	43	86	2	222	18	31	31	18	1.95
30266160--30266260	10	10.4	10	69	18	54	35	1	2	59	1.24
30266194--30266258	29	2.3	28	86	5	87	32	3	3	61	1.27
30274304--30274364	31	2.0	31	90	3	97	40	22	16	19	1.90
30274390--30274424	12	2.9	12	86	0	52	22	0	0	77	0.78
30274426--30274462	16	2.2	18	85	9	51	70	8	0	21	1.13
30274607--30274652	11	4.3	11	80	5	58	76	13	4	6	1.14
30274607--30274663	21	2.7	21	83	2	60	73	12	7	7	1.23
30278217--30278275	27	2.2	27	87	6	84	33	16	27	22	1.95
30282655--30282773	45	2.7	44	85	3	150	47	14	21	17	1.83
30284065--30284127	10	5.9	10	72	20	56	74	7	15	1	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30310414--30310462	26	1.9	25	87	4	71	36	18	22	22	1.95
30320238--30320354	62	1.9	59	89	5	180	43	2	3	50	1.32
30321382--30321424	21	2.0	21	81	0	50	41	20	2	34	1.65
30322740--30322779	19	2.1	19	85	0	53	32	7	25	35	1.84
30331052--30331085	18	1.9	17	88	5	50	11	29	44	14	1.81
30332032--30332079	18	2.7	18	78	9	62	41	2	16	39	1.60
30334371--30334421	21	2.4	22	83	3	59	45	9	3	41	1.56
30335638--30335712	18	4.2	17	83	10	71	36	0	1	62	1.04
30335646--30335743	9	10.7	9	80	15	69	32	1	1	65	1.06
30335638--30335694	27	2.1	27	87	6	80	38	0	0	61	0.96
30335673--30335742	28	2.5	28	83	4	88	30	1	1	67	1.08
30335712--30335762	19	2.8	18	74	11	50	31	3	1	62	1.24
30338515--30338552	12	2.9	13	84	11	51	39	7	5	47	1.55
30348887--30348935	24	2.0	24	84	0	62	36	0	40	22	1.54
30349605--30349774	27	6.3	27	85	3	207	42	21	16	20	1.89
30349605--30349774	81	2.1	82	87	1	243	42	21	16	20	1.89
30359784--30359841	21	2.8	21	78	0	62	43	29	13	13	1.83
30379070--30379200	51	2.6	50	82	4	156	24	17	25	32	1.97
30379017--30379200	101	1.8	101	84	3	253	24	17	26	31	1.97
30379205--30379289	46	1.9	43	80	7	98	24	14	27	34	1.94
30383979--30384135	45	3.5	45	78	3	163	29	14	24	31	1.94
30387267--30387310	21	2.0	22	83	12	56	45	4	9	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30392584--30392667	3	27.7	3	75	11	64	69	3	3	23	1.21
30392599--30392664	24	2.7	25	81	11	75	69	4	4	21	1.24
30396473--30396527	28	1.9	29	81	3	67	67	0	3	29	1.08
30398715--30398747	15	2.2	15	100	0	66	36	0	9	54	1.32
30401719--30401751	16	2.0	17	88	5	50	51	18	3	27	1.60
30403193--30403300	43	2.5	44	77	7	116	32	25	15	25	1.96
30404461--30404487	13	2.1	13	100	0	54	48	22	0	29	1.51
30405075--30405208	54	2.5	54	73	4	128	25	21	12	40	1.89
30405273--30405339	24	2.8	24	76	0	80	44	17	7	29	1.76
30405410--30405456	24	2.0	24	91	0	76	38	19	8	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173