genome.fa.s17.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  134  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40758530--40758654	57	2.2	57	88	1	178	42	31	1	24	1.64
40758602--40758659	22	2.6	22	91	0	98	43	29	1	25	1.65
40758616--40758688	29	2.6	28	82	8	94	42	30	1	26	1.64
40758581--40758709	49	2.6	49	76	13	140	41	31	0	25	1.61
40758666--40758718	14	4.0	13	80	9	63	33	41	0	24	1.55
40761830--40762401	127	4.5	127	91	0	862	28	22	17	31	1.97
40778644--40778708	29	2.1	33	81	13	77	1	27	1	69	1.07
40784348--40784398	20	2.4	22	77	9	61	37	3	1	56	1.29
40784802--40784892	44	2.1	44	87	0	128	49	3	6	40	1.45
40803947--40804016	31	2.3	30	75	7	70	48	21	7	22	1.74
40804052--40804091	21	1.9	21	94	0	71	25	17	27	30	1.97
40806295--40806330	18	2.0	18	88	0	54	77	0	0	22	0.76
40806499--40806784	143	2.0	145	90	2	461	38	10	10	40	1.73
40807409--40807456	12	4.1	12	92	7	57	27	0	4	68	1.07
40807423--40807462	3	13.3	3	100	0	80	32	0	0	67	0.91
40811930--40811959	13	2.3	13	94	0	51	66	23	10	0	1.21
40812888--40812920	12	2.8	12	86	4	50	30	3	0	66	1.06
40813530--40813621	41	2.3	40	86	5	123	30	21	27	20	1.98
40813704--40813941	41	5.8	41	90	2	354	18	24	29	27	1.98
40813704--40813941	83	2.9	81	88	5	361	18	24	29	27	1.98
40813704--40813941	124	1.9	124	88	3	363	18	24	29	27	1.98
40814061--40814194	66	2.0	66	98	0	259	45	5	8	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40814701--40814772	20	3.6	19	75	12	65	44	2	2	50	1.31
40814707--40814766	10	5.8	10	76	11	50	46	1	3	48	1.28
40815269--40815617	42	8.3	42	89	2	479	21	18	33	26	1.97
40815269--40815617	169	2.1	169	86	3	488	21	18	33	26	1.97
40816465--40816575	42	2.7	42	92	4	190	30	27	19	21	1.98
40819154--40819228	19	3.8	20	70	20	61	46	4	0	49	1.20
40822228--40822307	42	1.9	42	87	5	117	23	16	27	32	1.96
40828569--40828620	18	2.8	18	85	11	70	17	23	25	34	1.96
40835926--40835972	15	3.2	15	80	14	53	21	2	40	36	1.65
40835940--40835980	21	1.9	22	85	5	57	24	2	39	34	1.69
40835941--40836680	284	2.5	285	83	7	915	29	2	26	41	1.70
40836455--40836500	14	3.3	15	79	14	53	23	2	34	39	1.67
40836515--40836542	14	2.0	14	100	0	56	14	0	50	35	1.43
40836518--40836565	14	3.5	13	80	11	51	22	2	43	31	1.65
40837039--40837390	175	2.0	177	97	1	663	38	10	9	42	1.71
40837650--40837727	40	1.9	41	85	12	108	42	19	16	21	1.89
40837807--40838006	75	2.7	75	89	8	284	57	10	8	24	1.59
40840799--40841102	120	2.5	120	93	2	495	42	2	4	50	1.37
40840935--40840976	15	2.9	15	82	10	52	47	0	0	52	1.00
40840883--40841070	61	3.1	60	68	17	181	43	2	5	48	1.41
40841064--40841105	15	2.7	16	82	14	52	45	0	2	52	1.13
40841055--40841096	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40841039--40841355	157	2.0	157	93	1	546	47	5	3	44	1.42
40843662--40843709	23	2.1	23	100	0	96	39	43	4	12	1.62
40845539--40845694	42	3.7	43	76	2	154	23	19	28	28	1.98
40847051--40847081	2	15.0	2	93	6	53	48	0	3	48	1.17
40852591--40852696	50	2.1	51	81	10	119	54	5	0	38	1.30
40852947--40852979	16	2.1	16	94	0	57	18	0	27	54	1.44
40853028--40853061	16	2.1	17	88	5	52	44	0	0	55	0.99
40861159--40861219	10	5.6	11	75	21	58	22	34	0	42	1.54
40861176--40861231	22	2.5	22	94	2	94	30	30	0	39	1.57
40862411--40862435	7	3.6	7	100	0	50	28	0	12	60	1.32
40863084--40863120	18	2.1	18	94	0	65	24	35	8	32	1.85
40863348--40863387	9	4.4	9	87	0	62	45	25	30	0	1.54
40863704--40864552	23	34.7	23	76	17	754	46	22	0	29	1.58
40863704--40864031	50	6.7	49	77	16	317	46	23	0	29	1.57
40863812--40863909	29	3.6	29	84	16	154	46	22	0	30	1.52
40863724--40864552	102	8.4	98	77	17	632	46	22	0	29	1.58
40863827--40864503	125	5.5	123	75	18	549	46	22	0	30	1.57
40863707--40864552	267	3.1	264	83	9	966	46	22	0	29	1.58
40864359--40864402	21	2.2	21	92	8	74	50	20	0	29	1.49
40864555--40864775	116	1.9	116	93	1	381	39	9	9	41	1.70
40867807--40868158	126	2.8	125	88	4	539	33	21	15	28	1.94
40877538--40877574	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40882809--40882858	25	2.0	26	84	4	66	38	16	12	34	1.85
40887453--40887511	29	2.0	30	83	3	75	22	25	3	49	1.65
40894957--40894995	19	2.1	19	95	0	69	38	17	5	38	1.72
40897358--40897415	27	2.1	27	83	0	71	34	6	17	41	1.76
40899748--40899794	11	4.2	11	86	2	67	17	31	0	51	1.46
40899760--40899806	22	2.1	22	88	0	67	21	31	0	46	1.51
40899772--40899897	51	2.5	51	86	2	182	30	25	0	43	1.60
40902135--40902248	25	4.7	25	69	20	98	38	2	14	43	1.60
40902248--40903008	29	25.4	29	87	5	1000	46	32	0	20	1.55
40902271--40902355	41	2.1	41	93	0	143	42	36	1	20	1.60
40902301--40902333	12	2.8	12	90	4	50	33	45	0	21	1.52
40902248--40902391	70	2.1	69	93	1	243	43	34	0	21	1.58
40902384--40902437	18	3.4	18	67	32	59	44	33	0	22	1.53
40903006--40903162	55	2.9	55	99	0	305	41	10	4	43	1.58
40906188--40906537	124	2.8	123	90	2	540	33	21	14	30	1.94
40909536--40909596	30	2.0	30	100	0	122	40	26	9	22	1.85
40916764--40916894	42	3.1	42	79	0	145	40	16	24	19	1.90
40916749--40916831	21	4.0	21	68	9	55	38	18	27	15	1.91
40920871--40920896	13	2.0	13	100	0	52	30	7	23	38	1.83
40927978--40928147	43	3.9	43	74	13	134	24	16	27	31	1.96
40932787--40932833	24	2.0	24	86	0	67	48	0	27	23	1.51
40936773--40936799	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40942252--40942287	14	2.6	14	90	0	54	16	13	33	36	1.89
40943791--40943854	24	2.7	24	82	0	74	48	1	32	17	1.56
40943979--40944045	31	2.2	29	77	12	73	35	13	11	38	1.82
40948092--40948194	51	2.0	51	94	0	179	44	21	20	13	1.85
40951073--40951106	17	2.0	17	88	0	50	2	14	5	76	1.09
40951097--40951303	112	1.8	114	84	4	285	32	22	12	32	1.92
40952446--40952511	25	2.6	27	77	17	79	77	0	3	19	0.90
40952456--40952497	13	3.2	13	81	18	52	80	0	0	19	0.70
40952453--40952502	17	3.1	17	77	16	61	80	0	0	20	0.72
40952443--40952496	21	2.7	20	88	8	74	77	0	1	20	0.86
40952453--40952514	16	3.9	16	79	14	65	80	0	1	17	0.79
40956176--40956220	14	3.1	15	87	12	76	53	6	20	20	1.67
40956573--40956643	27	2.6	28	86	6	94	43	9	1	45	1.46
40961245--40961289	23	2.0	23	90	0	72	46	0	0	53	1.00
40966251--40966276	3	8.7	3	100	0	52	34	0	65	0	0.93
40967265--40967312	25	1.9	25	95	0	87	18	20	20	39	1.92
40977755--40977831	14	5.4	14	67	21	52	50	0	1	48	1.09
40978532--40978588	30	1.9	30	82	13	73	47	3	0	49	1.18
40987491--40987558	27	2.4	28	78	7	75	36	1	2	58	1.22
40987521--40987571	25	1.9	27	88	11	61	35	0	1	62	1.06
40987552--40987591	12	3.2	12	85	3	53	27	0	0	72	0.85
40987491--40987572	27	3.0	28	71	20	66	32	1	2	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40988317--40988426	52	2.1	53	91	1	177	23	15	18	42	1.88
41000393--41000567	87	2.0	87	95	0	314	26	24	9	39	1.85
41000707--41000737	15	2.1	15	93	0	53	83	0	0	16	0.64
41003736--41003767	2	16.0	2	100	0	64	50	0	50	0	1.00
41011944--41011970	14	1.9	14	100	0	54	44	22	3	29	1.70
41015811--41015845	9	4.0	9	85	7	54	48	0	0	51	1.00
41015806--41015843	17	2.2	18	95	4	69	47	0	2	50	1.15
41015814--41015877	28	2.2	29	81	10	78	42	0	3	54	1.16
41019232--41019267	15	2.4	15	100	0	72	41	11	0	47	1.39
41019457--41019495	16	2.5	16	95	4	71	35	10	0	53	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173