genome.fa.s17.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  106  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32808220--32808269	23	2.2	23	92	3	84	40	0	10	50	1.36
32808227--32808304	36	2.2	36	95	0	138	41	0	10	48	1.37
32811822--32811860	20	2.0	19	85	14	53	38	7	17	35	1.79
32815946--32816012	5	13.2	5	77	19	68	40	0	1	58	1.07
32815947--32816010	8	7.6	9	78	19	68	40	0	1	57	1.08
32816021--32816125	45	2.3	44	85	8	140	64	8	26	0	1.22
32816829--32816887	29	2.0	29	86	0	82	42	3	23	30	1.71
32817097--32817128	13	2.5	13	94	0	55	31	0	12	56	1.37
32817221--32817468	50	4.8	50	84	5	293	26	24	29	20	1.99
32817221--32817469	100	2.4	102	87	7	353	26	24	29	20	1.99
32820333--32820372	19	2.0	20	85	4	55	47	10	20	22	1.79
32822737--32822786	20	2.7	18	79	11	55	62	2	0	36	1.07
32831664--32831696	15	2.3	15	89	5	50	27	21	27	24	1.99
32834186--32834241	19	2.9	20	81	5	71	28	26	28	16	1.97
32837518--32837619	27	3.7	28	88	3	145	33	18	20	27	1.96
32841630--32841668	20	1.9	21	94	5	71	38	35	10	15	1.81
32845813--32845845	16	2.1	16	94	0	57	21	12	9	57	1.62
32848590--32848649	31	1.9	31	89	0	93	20	23	21	35	1.96
32848996--32849053	24	2.4	25	82	11	75	53	0	1	44	1.10
32849808--32849884	13	6.4	13	77	17	76	40	0	10	49	1.37
32849801--32849850	23	2.2	23	92	3	84	40	0	10	50	1.36
32849808--32849884	36	2.1	36	95	0	136	40	0	10	49	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32853373--32853411	20	2.0	19	85	14	53	38	7	17	35	1.79
32857834--32858120	146	2.0	142	88	5	425	44	9	4	40	1.58
32858885--32859227	42	8.2	42	89	1	463	37	24	18	20	1.94
32864641--32864668	12	2.3	12	100	0	56	35	7	39	17	1.78
32864659--32864692	4	8.5	4	86	0	50	44	0	32	23	1.54
32867925--32867985	20	3.4	19	72	27	69	65	0	4	29	1.13
32867925--32867992	34	2.0	34	97	0	127	67	0	4	27	1.09
32867930--32867988	12	5.3	11	76	15	50	66	0	5	28	1.13
32868936--32869019	25	3.4	24	79	11	89	30	23	20	25	1.98
32872165--32872470	156	2.0	152	85	10	408	44	11	2	40	1.55
32875311--32875362	24	2.2	24	89	0	77	55	9	1	32	1.43
32878570--32878624	27	2.0	27	96	0	101	7	34	14	43	1.73
32878573--32878634	27	2.5	24	82	12	65	8	35	12	43	1.73
32879338--32879418	40	2.0	41	83	11	105	1	28	1	69	1.04
32884732--32884763	8	3.9	8	92	8	55	75	0	3	21	0.95
32884732--32884763	17	1.9	17	93	6	57	75	0	3	21	0.95
32885980--32886412	44	9.9	43	67	13	168	29	22	19	29	1.98
32886241--32887046	143	5.6	143	86	1	1071	28	21	19	30	1.97
32886727--32886842	44	2.6	44	78	6	119	26	22	23	27	1.99
32887906--32887958	17	3.1	16	82	12	70	1	16	0	81	0.79
32890531--32890570	5	8.4	5	79	20	50	40	15	20	25	1.90
32890535--32890578	9	4.8	9	86	11	54	45	13	18	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32892651--32892695	9	5.2	9	77	17	51	66	2	2	28	1.15
32930747--32930791	23	2.0	23	100	0	90	28	22	4	44	1.72
32938003--32938215	114	1.9	114	88	2	320	37	15	17	30	1.90
32938209--32938726	111	4.7	112	83	10	690	33	15	14	36	1.89
32938282--32938708	220	2.0	210	90	4	674	34	16	15	33	1.90
32941995--32942028	17	2.0	17	100	0	68	47	5	23	23	1.73
32953827--32953869	22	2.0	22	82	17	54	53	27	4	13	1.60
32953951--32954130	39	4.6	39	87	1	245	45	20	3	31	1.69
32962491--32962531	22	1.9	21	90	5	64	0	12	17	70	1.16
32964695--32964792	20	5.0	19	69	15	56	12	31	19	36	1.89
32967377--32967598	27	8.3	27	87	3	261	44	20	15	19	1.87
32967376--32967598	80	2.8	80	86	2	304	44	20	15	19	1.86
32971006--32971083	6	13.0	6	100	0	156	50	33	0	16	1.46
32981400--32981450	20	2.5	20	80	0	57	39	13	29	17	1.88
33005578--33006075	50	9.8	50	89	1	681	22	30	20	26	1.98
33008442--33008475	16	2.1	17	94	5	61	38	11	17	32	1.86
33013727--33013765	14	2.8	14	84	0	51	35	20	25	17	1.95
33021031--33021089	30	2.0	30	89	0	91	33	10	13	42	1.78
33025527--33025565	18	2.3	18	86	8	55	43	12	5	38	1.65
33025722--33025752	15	2.1	15	100	0	62	22	32	6	38	1.80
33029113--33029142	15	2.0	15	93	0	51	23	46	6	23	1.75
33029884--33029922	18	2.3	18	86	8	55	43	12	5	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33030079--33030109	15	2.1	15	93	0	53	22	29	6	41	1.78
33042866--33043286	43	9.9	41	76	8	202	40	20	15	23	1.90
33042891--33043048	83	1.9	83	88	0	235	36	22	15	25	1.93
33042975--33043241	86	3.1	86	80	2	277	42	18	16	22	1.89
33043025--33043313	129	2.2	129	78	3	305	42	19	15	22	1.88
33048432--33048511	38	2.2	37	86	6	110	35	18	23	22	1.96
33052612--33052797	37	5.0	37	82	5	171	33	18	16	31	1.94
33052612--33052797	74	2.5	74	82	3	203	33	18	16	31	1.94
33052640--33052797	37	4.2	37	85	4	183	34	19	16	29	1.94
33054214--33054463	39	6.4	39	85	2	324	15	31	19	34	1.93
33055831--33055860	15	2.0	15	93	0	51	26	30	20	23	1.98
33066046--33066125	27	3.0	27	83	0	88	23	27	13	35	1.93
33066368--33066453	45	1.9	45	95	0	154	22	23	15	39	1.91
33070170--33070281	61	1.9	58	87	5	161	50	2	4	42	1.36
33070256--33070309	20	2.9	18	80	20	67	55	3	1	38	1.28
33076343--33076397	15	3.9	15	69	13	53	52	5	16	25	1.65
33076876--33076906	5	6.2	5	100	0	62	41	19	19	19	1.90
33077524--33077567	19	2.5	17	82	13	54	45	0	25	29	1.54
33077933--33077969	9	4.1	9	92	0	65	29	10	13	45	1.77
33077961--33078015	24	2.3	24	100	0	110	38	20	12	29	1.89
33081296--33081349	15	3.3	15	74	18	54	44	0	1	53	1.11
33102592--33102691	28	3.6	27	84	6	128	31	28	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33109153--33109201	8	6.2	8	76	4	55	55	2	0	42	1.11
33110138--33110176	18	2.2	18	86	9	53	53	2	0	43	1.14
33111188--33111310	61	2.0	60	81	4	140	36	6	14	42	1.72
33113373--33113424	27	2.0	27	85	7	72	38	5	1	53	1.36
33113373--33113431	27	2.1	28	81	9	68	37	5	1	55	1.32
33113900--33114190	108	2.7	109	91	2	473	27	15	20	36	1.93
33114699--33114732	15	2.3	15	94	0	59	64	0	2	32	1.08
33128131--33128360	40	5.8	40	82	6	241	16	27	17	37	1.92
33128131--33128400	80	3.4	79	80	5	285	17	27	17	37	1.92
33128137--33128400	120	2.2	121	84	2	336	17	28	17	37	1.92
33128137--33128400	40	6.6	40	79	6	223	17	28	17	37	1.92
33128344--33128400	20	2.8	20	71	7	53	21	24	17	36	1.94
33134188--33134368	38	4.9	38	76	9	158	40	30	16	12	1.85
33134223--33134366	71	2.0	72	87	4	211	38	31	16	13	1.87
33138059--33138367	40	7.8	40	80	0	296	21	28	15	35	1.93
33138095--33138157	20	3.2	20	66	8	56	20	36	15	26	1.93
33138059--33138367	80	3.9	80	77	0	332	21	28	15	35	1.93
33138065--33138362	119	2.5	120	79	1	310	20	29	15	34	1.93
33138058--33138367	159	1.9	159	84	1	406	21	28	15	35	1.93
33146882--33146986	41	2.6	41	90	0	165	23	28	21	25	1.99
33151680--33151717	16	2.4	16	90	0	58	31	26	2	39	1.70
33151689--33151730	16	2.6	16	85	7	50	28	28	0	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33151805--33151842	17	2.3	17	86	4	51	65	0	5	28	1.14
33152678--33152807	34	3.8	33	76	9	136	40	0	14	44	1.45
33152917--33153167	125	2.0	126	85	2	335	39	16	15	28	1.89
33158918--33158954	9	4.1	9	92	0	65	45	13	10	29	1.77
33159003--33159063	30	2.0	31	90	3	97	19	40	0	39	1.52
33172415--33172492	41	1.9	41	89	0	120	37	14	17	30	1.90
33172414--33172502	41	2.1	41	81	2	106	40	13	15	30	1.86
33175358--33175454	51	1.9	50	93	2	167	26	11	18	43	1.84
33189376--33189407	11	2.9	11	100	0	64	18	18	9	53	1.71
33189445--33189626	91	2.0	91	98	0	355	39	18	9	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173