genome.fa.s17.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  153  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46311869--46311897	8	3.6	8	100	0	58	24	13	27	34	1.93
46311977--46312098	23	5.3	23	90	0	199	21	21	27	30	1.98
46311979--46312098	46	2.6	46	97	0	222	20	21	27	30	1.98
46313569--46313616	24	2.0	24	88	8	71	27	2	10	60	1.41
46314107--46314494	194	2.0	194	85	2	519	39	12	20	27	1.89
46323990--46324596	88	6.9	88	91	1	936	25	23	22	28	1.99
46326721--46326749	9	3.2	9	100	0	58	10	0	10	79	0.94
46333189--46333242	19	2.9	19	86	8	67	53	7	0	38	1.29
46333383--46333417	16	2.2	16	89	0	52	34	5	8	51	1.56
46346210--46346258	23	2.1	23	88	3	71	67	18	6	8	1.37
46346210--46346258	12	4.2	12	78	5	55	67	18	6	8	1.37
46346662--46346701	15	2.5	17	76	15	50	27	5	2	65	1.27
46346882--46346925	11	3.9	11	90	3	70	45	0	31	22	1.53
46346882--46346925	22	2.0	23	95	4	81	45	0	31	22	1.53
46353417--46353441	13	1.9	13	100	0	50	76	8	8	8	1.18
46356998--46357088	41	2.2	41	96	0	164	23	9	37	29	1.87
46358252--46358399	31	4.8	31	72	11	106	44	16	8	29	1.78
46358290--46358921	31	20.6	31	74	9	447	43	18	6	31	1.75
46358289--46358921	92	6.9	92	88	1	896	43	18	6	31	1.75
46358890--46359001	56	2.0	55	82	5	136	47	15	7	30	1.72
46361469--46361510	16	2.7	15	76	20	50	40	0	4	54	1.21
46364778--46364803	7	3.7	7	100	0	52	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46372831--46372957	58	2.1	61	84	7	163	65	18	8	7	1.43
46381931--46381983	22	2.4	22	96	3	97	26	32	0	41	1.56
46381993--46382069	22	3.2	22	64	22	55	28	24	0	46	1.53
46381958--46382073	51	2.3	51	98	0	223	27	27	0	44	1.54
46383230--46383261	7	4.6	7	100	0	64	28	0	12	59	1.34
46384383--46384625	29	8.5	29	88	3	377	44	26	0	28	1.58
46384632--46384869	116	2.1	116	93	0	404	37	11	9	42	1.73
46384845--46384886	17	2.4	18	80	4	50	42	9	2	45	1.49
46387898--46388124	125	1.8	125	93	0	391	33	22	14	29	1.94
46388557--46388697	6	22.8	6	69	9	61	59	5	2	31	1.35
46388595--46388697	37	2.8	37	84	5	120	60	3	2	33	1.30
46388811--46388849	14	2.8	13	81	11	51	43	5	17	33	1.72
46393288--46393348	24	2.5	25	79	12	65	54	3	1	40	1.27
46393276--46393404	56	2.3	58	87	2	190	49	3	2	44	1.30
46397623--46397674	18	2.9	17	83	8	59	38	0	0	61	0.96
46408666--46408721	27	2.1	27	83	6	69	14	12	8	64	1.50
46408706--46408754	14	3.7	14	73	15	59	0	20	0	79	0.73
46413477--46413675	44	4.7	43	73	16	198	28	22	23	25	1.99
46413560--46414004	127	3.6	118	88	5	583	27	21	23	27	1.99
46413722--46413910	44	4.4	41	68	15	116	28	21	22	27	1.99
46413474--46414004	242	2.1	245	90	4	818	28	21	23	26	1.99
46415230--46415273	18	2.5	17	85	10	61	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46419068--46419110	6	7.5	6	82	10	54	62	2	0	34	1.08
46419076--46419108	16	2.1	16	94	0	57	57	3	0	39	1.14
46419136--46419179	20	2.2	20	84	8	54	47	6	6	38	1.57
46419247--46419310	3	21.7	3	75	3	58	62	0	6	31	1.20
46420759--46421620	99	8.7	99	85	2	1111	22	20	22	34	1.97
46420763--46421620	199	4.3	199	92	1	1337	22	20	22	34	1.97
46420751--46421769	50	20.5	50	70	12	584	22	20	22	34	1.97
46423054--46423094	19	2.3	18	87	8	57	0	19	0	80	0.71
46423054--46423094	16	2.8	15	86	13	59	0	19	0	80	0.71
46423824--46423855	13	2.6	12	90	9	55	0	0	9	90	0.45
46428829--46428867	16	2.4	16	95	0	69	61	2	0	35	1.10
46429002--46429093	3	30.7	3	96	0	166	64	0	1	34	1.01
46431828--46431889	20	3.2	20	81	6	74	50	1	9	38	1.45
46431833--46431893	18	3.3	18	81	4	68	50	1	9	37	1.45
46433663--46434275	44	13.9	44	86	2	784	30	24	14	31	1.94
46433663--46434275	221	2.8	220	86	3	836	30	24	14	31	1.94
46433663--46434284	265	2.3	265	90	1	978	29	24	14	31	1.94
46434282--46434529	132	1.9	132	94	0	442	27	24	18	29	1.98
46434423--46434635	107	2.0	107	88	0	318	26	27	17	27	1.98
46434298--46434736	239	1.8	239	87	3	652	28	24	18	28	1.98
46435920--46435951	6	5.2	6	92	7	55	18	15	0	65	1.27
46435923--46435948	13	2.0	13	100	0	52	23	15	0	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46436860--46436903	18	2.4	18	88	0	61	61	6	18	13	1.54
46438175--46438223	21	2.3	21	96	0	89	12	42	12	32	1.79
46438762--46438806	19	2.4	19	85	7	56	44	8	20	26	1.80
46438832--46438858	13	2.1	13	100	0	54	44	25	7	22	1.79
46440647--46440680	16	2.1	16	88	0	50	44	14	2	38	1.61
46440749--46440810	20	3.2	20	81	6	74	50	1	9	38	1.45
46440754--46440814	18	3.3	18	81	4	68	50	1	9	37	1.45
46442825--46442849	4	6.2	4	100	0	50	76	0	0	24	0.80
46454337--46454383	21	2.2	22	92	3	78	21	38	19	21	1.94
46469150--46469307	79	2.0	79	94	0	280	30	8	13	47	1.72
46471217--46471573	70	5.1	70	85	0	435	28	29	19	22	1.98
46471228--46471617	140	2.8	137	81	5	428	28	29	19	22	1.98
46471217--46471603	210	1.8	210	82	2	490	28	28	19	22	1.98
46471972--46472032	19	3.2	18	72	9	59	36	1	4	57	1.30
46472053--46472084	15	2.2	15	94	5	57	53	6	3	37	1.42
46475291--46475333	21	2.0	23	81	9	54	32	11	11	44	1.77
46478574--46478631	20	2.9	20	70	17	57	36	1	0	62	1.06
46478570--46478630	19	3.3	18	80	8	59	34	1	0	63	1.04
46478579--46478627	18	2.6	19	78	12	57	34	2	0	63	1.06
46478651--46478873	88	2.5	87	83	5	263	34	8	19	36	1.83
46479534--46479572	15	2.8	13	82	14	51	43	5	12	38	1.65
46479829--46480029	35	5.8	35	82	2	235	21	22	16	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46479830--46480029	69	2.9	69	93	0	328	21	22	17	39	1.93
46482835--46482877	20	2.1	22	87	12	65	13	6	9	69	1.35
46487495--46487534	3	13.3	3	94	0	71	67	2	0	30	1.04
46488838--46488956	58	2.1	58	88	0	175	42	15	21	19	1.88
46489360--46489466	34	3.1	34	65	21	94	38	14	31	14	1.88
46492970--46493056	17	4.9	17	72	18	63	25	2	0	72	0.96
46492973--46493049	5	14.4	5	76	16	66	23	2	0	74	0.95
46492974--46493056	26	3.2	24	79	17	80	24	2	0	73	0.95
46494017--46494085	12	6.3	11	79	14	63	75	1	1	21	0.96
46494025--46494075	4	13.0	4	80	19	63	74	1	0	23	0.92
46494638--46494672	15	2.4	15	90	4	54	48	0	8	42	1.33
46497514--46497742	96	2.4	96	80	3	257	40	2	17	39	1.63
46497776--46498066	126	2.3	126	92	0	474	32	19	21	26	1.97
46500980--46501018	18	2.2	18	90	0	60	43	10	25	20	1.83
46501089--46501150	30	2.1	30	84	0	79	9	11	45	33	1.73
46502341--46502729	110	3.6	110	92	1	631	33	20	16	29	1.95
46503225--46503268	18	2.4	18	76	0	52	65	2	9	22	1.32
46506128--46506199	35	2.1	35	100	0	144	30	8	22	38	1.83
46508851--46508922	26	2.7	26	82	6	92	59	5	0	34	1.21
46508863--46508908	14	3.4	14	76	11	60	60	4	0	34	1.16
46514319--46514349	11	2.8	11	100	0	62	29	29	0	41	1.56
46516410--46516471	21	3.0	21	73	4	54	32	40	19	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46516584--46516727	52	2.7	51	75	17	139	43	2	6	48	1.40
46519716--46519983	126	2.1	126	96	0	491	28	21	15	34	1.94
46520585--46520629	16	2.8	17	77	19	51	42	2	2	53	1.25
46521011--46521035	13	1.9	13	100	0	50	36	0	16	48	1.46
46521497--46521523	8	3.4	8	100	0	54	25	0	0	74	0.83
46521586--46521617	14	2.3	14	100	0	64	43	6	6	43	1.54
46521994--46522035	13	2.9	14	80	13	50	54	0	0	45	0.99
46521998--46522034	16	2.3	16	86	13	58	59	0	0	40	0.97
46522055--46522120	15	4.1	15	73	17	53	51	1	1	45	1.19
46523310--46523387	38	2.1	38	90	0	120	47	10	8	33	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173