genome.fa.s17.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  137  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41573415--41573494	40	2.0	40	95	0	142	45	17	15	22	1.85
41576030--41576054	13	1.9	13	100	0	50	60	0	0	40	0.97
41578094--41578132	20	1.9	19	85	10	51	28	0	2	69	1.02
41578848--41578872	7	3.6	7	100	0	50	48	0	0	52	1.00
41583841--41583887	3	15.7	3	100	0	94	68	0	0	31	0.90
41585083--41585150	31	2.2	32	83	2	84	38	11	11	38	1.79
41586621--41586651	12	2.7	11	90	9	53	64	0	3	32	1.09
41591843--41591884	22	1.9	22	85	0	57	54	2	2	40	1.26
41599795--41599839	21	2.1	21	100	0	90	17	20	28	33	1.95
41606202--41606237	18	2.0	18	100	0	72	22	27	16	33	1.95
41607429--41607511	42	2.0	42	92	0	139	26	21	24	27	1.99
41626929--41627141	76	2.8	77	91	1	356	30	26	20	22	1.98
41627116--41627193	27	2.9	27	100	0	156	26	30	25	16	1.97
41628689--41628873	46	4.0	46	97	0	334	28	26	9	35	1.87
41632388--41632459	25	2.9	25	91	4	110	31	19	25	23	1.98
41632797--41632838	21	2.0	21	85	0	57	40	21	0	38	1.53
41633206--41633339	68	2.0	66	94	2	232	54	11	9	24	1.66
41642847--41643138	88	3.3	88	72	4	300	31	23	16	28	1.96
41642960--41643236	44	6.3	45	71	6	172	27	25	19	28	1.99
41642847--41643223	176	2.1	177	94	0	666	28	24	17	28	1.97
41642931--41643209	88	3.2	88	75	4	328	27	25	16	30	1.97
41657442--41657587	76	1.9	75	87	1	211	36	15	19	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41657863--41657899	13	2.8	13	100	0	74	70	0	13	16	1.17
41657921--41657953	14	2.4	14	94	0	57	42	0	12	45	1.41
41658345--41658436	3	30.3	3	80	8	98	64	3	4	28	1.28
41659775--41659811	19	1.9	19	100	0	74	29	5	37	27	1.79
41674154--41674523	103	3.6	104	89	3	577	31	29	19	19	1.96
41674857--41674914	30	1.9	30	85	0	80	31	22	6	39	1.80
41676160--41676232	32	2.5	27	74	19	83	26	2	17	53	1.57
41676173--41676233	32	1.9	32	93	0	104	27	3	16	52	1.59
41677410--41677454	20	2.4	18	79	13	54	51	0	4	44	1.21
41690892--41690927	17	2.1	17	100	0	72	11	11	11	66	1.45
41691667--41691762	23	4.2	23	86	5	133	19	7	23	48	1.74
41692957--41693159	25	8.3	25	75	14	190	49	6	7	36	1.56
41692950--41693132	48	3.8	48	95	0	330	49	7	7	36	1.59
41692971--41693171	96	2.1	95	84	6	255	49	5	6	38	1.53
41696739--41696947	92	2.3	92	86	5	280	45	3	3	46	1.39
41696875--41696922	26	1.9	25	84	16	64	45	0	2	52	1.12
41697001--41697331	66	5.4	63	67	22	247	41	3	6	48	1.43
41696963--41697375	120	3.4	120	96	2	733	42	2	5	49	1.38
41697088--41697139	15	3.6	15	80	12	56	44	0	1	53	1.11
41697208--41697259	15	3.6	15	80	12	56	44	0	1	53	1.11
41697312--41697628	157	2.0	157	95	0	571	47	5	3	44	1.43
41697749--41697813	16	4.1	16	91	0	94	32	35	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41700008--41700034	11	2.5	11	100	0	54	14	0	0	85	0.61
41700485--41700516	17	1.9	17	93	6	57	25	0	3	71	1.00
41700750--41700980	94	2.5	94	83	0	291	26	18	19	35	1.94
41700950--41701120	44	3.6	51	68	17	132	31	16	16	35	1.91
41700908--41701120	94	2.3	92	84	4	268	30	16	17	35	1.92
41701304--41701755	44	9.7	44	67	19	195	28	19	18	33	1.95
41701243--41701907	94	7.1	94	82	3	703	29	18	18	33	1.95
41701093--41701907	188	4.4	186	79	6	688	29	20	17	33	1.95
41701243--41701907	282	2.4	281	83	3	845	29	18	18	33	1.95
41709096--41709120	9	2.8	9	100	0	50	8	0	0	92	0.40
41710269--41710310	19	2.3	19	83	4	50	33	7	9	50	1.62
41713777--41713808	17	1.9	16	93	6	55	21	0	12	65	1.25
41717150--41717196	18	2.6	18	78	15	53	72	0	8	19	1.10
41719044--41719123	29	2.7	29	84	3	88	30	10	20	40	1.85
41725242--41725309	25	2.7	26	82	11	79	20	27	16	35	1.94
41725979--41726029	25	2.0	25	100	0	102	37	3	23	35	1.74
41728031--41728092	24	2.6	24	82	7	72	37	22	24	16	1.94
41728168--41728263	26	3.7	26	83	2	113	38	17	23	19	1.93
41731641--41732239	312	1.9	311	92	2	1015	27	11	21	38	1.89
41745663--41745723	19	3.2	19	76	17	63	59	3	0	37	1.14
41749257--41749379	55	2.2	56	86	1	167	30	11	26	32	1.91
41749257--41749379	28	4.4	28	87	2	167	30	11	26	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41750105--41750729	23	26.8	24	69	12	261	28	14	18	39	1.90
41750123--41750305	93	2.0	92	89	3	278	28	15	18	37	1.91
41750224--41750738	93	5.5	93	93	0	805	28	14	17	39	1.89
41750105--41750735	140	4.5	140	83	2	820	28	14	17	39	1.89
41751804--41751854	20	2.6	19	84	9	66	45	15	13	25	1.83
41752074--41752116	22	1.9	23	85	4	61	39	13	2	44	1.57
41754911--41754962	5	10.4	5	91	0	68	15	28	19	36	1.92
41755345--41755386	17	2.4	18	80	11	52	61	2	2	33	1.21
41755376--41755418	22	2.0	22	85	0	59	48	2	0	48	1.14
41758763--41758869	32	3.4	32	70	12	105	28	25	10	36	1.88
41758641--41758893	61	4.2	61	78	3	260	27	24	14	33	1.94
41762312--41762361	25	2.0	25	81	14	59	32	8	0	60	1.26
41764145--41764182	12	3.1	12	82	17	51	18	18	0	63	1.32
41766248--41766276	12	2.3	13	94	5	51	65	0	0	34	0.93
41768186--41768257	30	2.4	31	81	9	85	27	13	12	45	1.80
41768217--41768342	29	4.2	30	72	9	96	24	15	16	42	1.87
41775233--41775277	23	2.0	23	95	0	81	42	26	20	11	1.85
41787640--41787666	13	2.1	13	100	0	54	0	7	7	85	0.75
41792474--41792515	3	14.0	3	100	0	84	66	0	33	0	0.92
41799167--41799205	20	2.0	20	90	10	62	48	15	5	30	1.66
41804725--41804860	72	1.9	72	84	3	184	42	8	13	34	1.76
41805046--41805265	67	3.3	67	93	1	361	18	23	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41805046--41805266	35	6.6	35	80	12	241	18	23	17	41	1.90
41805868--41805971	35	3.1	35	81	8	151	18	20	17	44	1.87
41805854--41805961	32	3.3	32	83	7	153	18	24	16	40	1.90
41808771--41808815	20	2.1	23	88	12	69	13	8	8	68	1.38
41809345--41809399	17	3.2	17	68	0	56	30	12	12	43	1.80
41814078--41814177	50	2.0	48	84	7	130	29	16	9	46	1.77
41820627--41820875	50	4.8	50	85	3	300	20	29	23	26	1.99
41820626--41820875	100	2.4	104	88	5	355	20	29	23	26	1.99
41820970--41821001	13	2.5	13	94	0	55	56	12	0	31	1.37
41823030--41823079	25	2.0	25	92	0	82	12	20	24	44	1.85
41828604--41828661	21	2.8	21	86	0	80	27	13	27	31	1.94
41831886--41831924	17	2.4	17	86	4	53	74	0	2	23	0.94
41831893--41831924	11	2.8	11	95	4	55	71	0	3	25	1.00
41833644--41833732	33	2.6	34	76	13	94	64	2	3	30	1.22
41834587--41834707	61	2.0	61	81	0	143	27	15	24	32	1.96
41837856--41837895	21	1.9	21	85	10	55	45	7	7	40	1.61
41842850--41842971	43	2.8	43	86	1	172	23	18	26	31	1.97
41850673--41850879	43	4.9	42	77	11	199	22	14	28	34	1.94
41850680--41850881	85	2.4	84	79	9	205	23	14	27	34	1.94
41853059--41853140	30	2.7	30	90	0	128	36	21	17	24	1.94
41857872--41858104	40	5.9	38	76	7	171	32	16	29	21	1.95
41857888--41858106	80	2.7	80	88	2	307	31	17	29	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41857915--41858106	40	4.8	39	80	5	233	33	16	28	21	1.95
41869019--41869079	30	2.0	31	87	9	90	36	1	42	19	1.61
41871027--41871211	40	4.6	40	80	6	196	33	18	29	18	1.95
41871027--41871211	80	2.3	80	84	3	230	33	18	29	18	1.95
41879544--41879579	13	2.7	14	87	12	58	41	13	8	36	1.75
41880446--41880494	24	2.0	25	84	4	64	30	0	38	30	1.58
41881098--41881314	27	8.1	27	81	1	211	41	23	17	18	1.90
41881105--41881319	107	2.0	108	81	0	252	40	22	17	19	1.91
41886722--41886776	26	2.1	26	89	3	83	30	14	27	27	1.95
41888939--41888994	22	2.5	22	88	0	76	26	19	32	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173