genome.fa.s17.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  167  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50060569--50060603	17	2.1	17	100	0	70	28	5	0	65	1.15
50062435--50062489	4	13.8	4	100	0	110	25	0	25	49	1.51
50064806--50064870	3	22.3	3	76	20	59	64	1	4	29	1.22
50070501--50070561	21	2.9	21	73	4	61	19	18	24	37	1.94
50071637--50071688	25	2.1	25	100	0	104	32	7	11	48	1.68
50073712--50073761	20	2.4	21	93	6	84	48	0	2	50	1.12
50073712--50073762	10	4.9	10	80	4	57	47	0	1	50	1.12
50074009--50074054	16	2.9	16	93	0	74	34	21	2	41	1.66
50078245--50078427	92	2.0	91	87	4	262	51	15	1	31	1.53
50078183--50078613	197	2.1	204	81	10	490	52	16	1	29	1.53
50078899--50078924	8	3.2	8	100	0	52	0	11	0	88	0.52
50078913--50078955	22	2.0	22	86	9	61	0	30	0	69	0.88
50078897--50078956	13	4.6	13	77	6	59	0	25	0	75	0.81
50082457--50082508	24	2.2	24	89	0	77	55	9	1	32	1.43
50084428--50084479	24	2.2	24	89	0	77	55	9	1	32	1.43
50094666--50094795	40	3.3	39	92	4	217	63	0	1	35	1.04
50094666--50094795	39	3.3	39	92	2	208	63	0	1	35	1.04
50094674--50094779	11	10.4	11	68	21	70	60	0	1	37	1.08
50100468--50100505	18	2.2	17	90	4	58	71	2	0	26	1.00
50100459--50100541	29	2.9	28	82	7	96	67	4	4	22	1.29
50111684--50111738	16	3.5	16	74	20	62	34	10	10	43	1.75
50111695--50111744	16	3.2	16	72	11	59	28	8	12	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50111683--50111743	30	2.0	31	96	3	115	31	9	13	45	1.75
50116615--50116660	23	2.0	24	91	4	76	19	17	13	50	1.78
50118344--50118380	18	2.2	18	85	9	51	21	8	0	70	1.13
50128752--50128794	21	2.0	22	90	4	70	20	37	20	20	1.95
50143245--50143321	14	5.0	15	71	20	52	42	14	9	33	1.77
50143261--50143300	20	2.0	20	90	0	62	50	12	10	27	1.72
50143249--50143315	34	1.9	35	90	3	109	46	13	8	31	1.74
50147186--50147210	9	2.8	9	100	0	50	44	0	0	56	0.99
50154433--50154475	19	2.2	20	91	4	70	13	2	2	81	0.89
50154831--50154875	24	2.0	22	86	8	63	33	48	0	17	1.48
50155625--50155784	41	3.9	41	87	0	230	31	28	23	16	1.96
50155860--50155947	40	2.2	40	83	4	115	20	18	21	39	1.92
50160218--50160265	19	2.7	19	78	18	59	20	14	16	47	1.82
50174099--50174148	17	2.7	20	78	18	70	10	0	44	46	1.37
50178737--50178786	17	2.7	20	78	18	70	10	0	44	46	1.37
50180673--50180910	126	1.9	126	97	0	449	36	13	18	31	1.89
50182937--50183284	174	2.0	175	84	5	463	23	11	20	43	1.85
50189632--50189977	174	2.0	175	84	4	457	22	11	20	44	1.84
50194343--50194441	32	3.1	32	85	4	128	38	9	13	39	1.76
50198823--50198881	5	11.8	5	100	0	118	40	0	0	59	0.97
50210556--50210591	4	9.0	4	93	0	63	27	0	22	50	1.50
50213876--50213915	19	2.2	18	90	4	62	37	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50213875--50213933	19	3.1	19	76	11	57	44	0	3	52	1.17
50213989--50214033	21	2.1	21	83	0	54	60	2	0	37	1.09
50220431--50220477	20	2.2	22	88	7	71	48	0	0	51	1.00
50222626--50222653	4	7.0	4	100	0	56	0	25	0	75	0.81
50223851--50223884	3	11.3	3	87	0	50	0	26	0	73	0.83
50226589--50226619	16	1.9	16	93	0	53	58	16	3	22	1.52
50228204--50228241	16	2.4	16	86	8	51	55	2	0	42	1.14
50228168--50228230	32	2.0	32	81	12	76	39	3	4	52	1.38
50230807--50230886	29	2.7	29	82	5	88	51	12	2	33	1.53
50231725--50231796	30	2.3	31	81	11	85	38	11	9	40	1.74
50231990--50232045	21	2.6	21	97	2	103	32	8	10	48	1.69
50236393--50236431	17	2.4	16	84	12	53	38	10	2	48	1.51
50267022--50267068	3	15.7	3	81	16	53	25	2	2	70	1.10
50267603--50267632	15	2.0	15	93	0	51	36	6	3	53	1.44
50399118--50399164	19	2.5	19	86	6	60	23	19	12	44	1.85
50400265--50400303	6	6.3	6	83	16	53	84	0	0	15	0.62
50400265--50400293	14	2.1	14	100	0	58	86	0	0	13	0.58
50400261--50400309	20	2.4	19	74	12	53	77	8	0	14	0.98
50401783--50401859	33	2.3	33	93	2	136	55	7	10	25	1.60
50402141--50402200	18	3.3	19	68	17	54	63	6	1	28	1.29
50402334--50402463	50	2.4	54	75	18	130	62	0	6	30	1.22
50402475--50402534	19	3.2	18	79	9	66	66	1	1	30	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50402512--50402550	11	3.4	11	86	10	51	66	0	5	28	1.12
50409699--50409730	14	2.4	13	90	10	55	37	12	15	34	1.85
50412376--50412413	20	1.9	19	94	5	67	31	2	0	65	1.06
50412375--50412445	11	6.7	11	77	16	71	36	4	0	59	1.17
50412398--50412445	10	4.5	10	84	7	60	37	4	0	58	1.18
50412375--50412446	31	2.3	31	87	4	99	36	4	0	59	1.17
50412398--50412440	23	1.9	23	90	4	70	41	4	0	53	1.21
50415176--50415300	31	4.1	31	75	8	121	40	15	20	24	1.90
50415327--50415431	29	3.6	29	76	10	104	42	20	17	19	1.89
50415306--50415460	60	2.6	60	86	2	195	40	20	19	20	1.92
50415572--50415634	31	2.0	31	84	0	81	53	14	9	22	1.69
50417443--50417488	23	2.0	23	100	0	92	17	30	13	39	1.87
50419488--50419537	25	2.0	25	96	0	91	42	2	28	28	1.67
50421285--50421317	10	3.1	11	86	8	50	63	6	0	30	1.18
50421292--50421319	10	2.8	10	100	0	56	64	7	0	28	1.20
50421289--50421346	9	6.3	9	84	7	64	68	3	0	27	1.05
50421652--50421679	7	4.0	7	100	0	56	14	0	0	85	0.59
50423943--50423971	12	2.3	13	94	5	51	89	10	0	0	0.48
50427282--50427321	21	1.9	21	84	0	53	50	2	2	45	1.28
50427465--50427538	3	24.0	3	79	15	80	64	2	1	31	1.15
50427471--50427533	21	3.0	21	90	2	90	65	3	1	30	1.18
50427457--50427525	15	4.5	15	75	18	61	66	1	2	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50428874--50429824	100	9.5	100	93	0	1623	21	18	25	34	1.96
50437670--50437708	19	2.1	19	85	9	53	56	7	5	30	1.49
50441378--50441417	21	1.9	21	89	0	62	47	2	2	47	1.29
50441557--50441627	3	23.0	3	78	16	74	64	2	1	30	1.16
50441563--50441617	21	2.6	21	91	0	83	65	1	1	30	1.13
50444998--50445030	3	11.0	3	100	0	66	33	0	0	66	0.92
50446436--50446481	16	2.8	17	80	6	67	52	0	8	39	1.33
50446583--50446613	16	1.9	16	93	0	53	35	6	9	48	1.62
50447680--50447717	20	1.9	20	88	0	58	31	7	2	57	1.41
50449659--50449731	18	4.2	18	73	7	60	30	23	15	31	1.95
50451950--50451986	15	2.5	15	100	0	74	59	5	21	13	1.54
50452048--50452093	23	2.0	23	100	0	92	17	21	26	34	1.95
50454425--50454484	16	3.6	16	77	20	61	50	0	0	50	1.00
50482050--50482082	16	2.0	16	94	5	57	60	0	0	39	0.97
50487424--50487595	42	4.1	42	82	8	192	29	27	16	25	1.97
50489341--50489371	4	8.0	4	92	7	55	51	0	0	48	1.00
50491003--50491071	31	2.2	31	84	0	84	42	10	14	33	1.79
50491603--50491692	32	2.8	31	83	6	108	72	7	8	11	1.29
50508899--50508966	34	2.0	35	82	2	84	47	10	7	35	1.66
50515351--50515394	19	2.2	19	84	8	52	38	2	2	56	1.24
50516325--50516356	13	2.4	14	90	10	50	75	6	0	18	1.01
50516383--50516422	20	2.0	20	85	0	53	62	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50523883--50523939	27	2.1	27	83	9	71	56	1	1	40	1.20
50524494--50524540	10	4.6	10	82	15	60	29	0	8	61	1.25
50524497--50524537	14	2.9	15	92	7	61	29	0	9	60	1.28
50524494--50524540	21	2.3	19	86	13	67	29	0	8	61	1.25
50527561--50527600	17	2.4	17	87	4	55	47	2	0	50	1.14
50532757--50532923	83	2.0	83	98	0	325	21	23	14	40	1.90
50539966--50540016	26	2.0	26	96	0	93	29	35	23	11	1.90
50539829--50540094	103	2.6	104	91	3	437	30	31	19	18	1.96
50540420--50540483	30	2.2	29	81	10	76	29	28	6	35	1.82
50540427--50540483	30	1.9	30	85	3	80	29	24	7	38	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173