genome.fa.s17.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  112  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34704789--34704831	20	2.2	20	83	8	52	44	16	13	25	1.85
34711954--34711997	23	1.9	23	85	0	61	25	4	6	63	1.38
34713900--34713957	23	2.5	22	91	5	89	22	48	5	24	1.71
34723589--34723637	25	2.0	25	87	0	71	38	14	6	40	1.71
34723685--34723743	20	3.0	20	82	0	73	42	20	6	30	1.78
34736582--34736613	5	6.4	5	100	0	64	18	0	0	81	0.70
34744149--34744189	14	2.9	14	88	3	55	68	2	2	26	1.15
34750553--34750591	13	3.1	13	88	3	53	46	5	0	48	1.24
34751407--34751554	73	2.0	72	82	6	174	37	1	29	31	1.66
34762970--34763085	43	2.7	43	77	10	119	32	25	16	25	1.96
34764692--34764822	40	3.3	40	88	1	183	45	29	13	12	1.80
34769646--34769695	24	2.1	24	92	0	82	22	8	4	66	1.35
34778071--34778441	94	4.0	94	81	1	395	33	19	21	26	1.97
34781679--34781805	41	3.1	41	82	0	155	31	20	22	25	1.98
34781697--34781838	41	3.5	41	83	1	142	33	21	22	22	1.97
34789495--34789636	41	3.5	41	82	1	151	30	23	22	23	1.99
34792406--34792455	10	5.2	10	80	9	50	40	0	2	58	1.10
34792406--34792465	28	2.1	28	81	0	66	36	0	1	61	1.06
34792424--34792469	20	2.4	19	88	3	65	32	0	2	65	1.05
34792424--34792470	18	2.5	18	86	6	58	31	0	2	65	1.04
34792475--34792528	20	2.7	20	85	5	74	35	0	7	57	1.27
34796616--34796951	123	2.6	123	80	7	323	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34799357--34799400	20	2.2	20	84	8	54	63	4	13	18	1.46
34808348--34808380	16	2.1	15	94	5	57	18	6	6	69	1.30
34815137--34815374	44	5.1	44	67	20	126	31	17	21	28	1.96
34815048--34816542	94	16.0	94	81	2	1528	33	19	20	26	1.96
34815600--34816118	44	11.2	44	68	18	151	32	19	20	26	1.97
34821597--34821624	12	2.3	12	100	0	56	28	7	7	57	1.52
34823302--34823345	21	2.1	21	86	0	61	50	0	9	40	1.34
34823622--34823658	2	18.5	2	94	0	65	48	0	2	48	1.15
34823727--34823784	31	1.9	30	86	10	82	41	6	1	50	1.39
34825660--34825693	18	1.9	18	88	5	52	55	0	5	38	1.24
34831232--34831257	12	2.2	12	100	0	52	0	42	0	57	0.98
34831224--34831277	18	3.1	17	79	10	63	0	37	0	62	0.95
34832100--34832206	27	4.0	27	81	2	117	38	15	18	27	1.91
34835208--34835232	11	2.3	11	100	0	50	32	0	8	60	1.26
34847257--34847296	21	1.9	21	84	0	53	27	37	5	30	1.78
34848604--34848751	70	2.1	71	93	1	253	55	10	5	29	1.55
34849167--34849201	17	2.0	18	88	5	54	60	2	5	31	1.35
34851129--34851179	23	2.2	23	92	0	93	37	0	15	47	1.46
34852948--34853017	31	2.3	31	92	0	113	30	24	17	28	1.97
34863970--34864018	20	2.7	18	75	12	55	48	4	4	42	1.40
34865686--34865719	16	2.1	16	88	0	50	76	8	0	14	1.01
34867616--34867648	3	11.0	3	93	0	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34867679--34867703	13	1.9	13	100	0	50	48	16	12	24	1.79
34868485--34868585	31	3.3	31	92	0	166	30	23	17	27	1.97
34868949--34868975	3	9.0	3	100	0	54	66	0	0	33	0.92
34871775--34871804	12	2.5	12	94	0	51	13	23	20	43	1.86
34872319--34872526	91	2.3	91	87	2	283	44	4	3	47	1.39
34872556--34872587	16	1.9	17	93	6	57	53	0	0	46	1.00
34872556--34872598	16	2.9	14	83	16	52	48	0	0	51	1.00
34872614--34872801	61	3.1	61	68	14	190	41	2	6	49	1.41
34872662--34872696	18	2.0	17	88	5	52	40	0	0	60	0.97
34872542--34872838	120	2.5	120	91	2	490	42	2	5	50	1.35
34872782--34872816	18	2.0	17	88	5	52	45	0	0	54	0.99
34872770--34873044	147	1.9	149	96	1	509	47	2	3	46	1.33
34872929--34872963	18	2.0	17	88	5	52	45	0	0	54	0.99
34873125--34873219	45	2.1	45	88	1	138	32	27	5	34	1.79
34873200--34873251	16	3.2	16	94	0	86	34	36	0	28	1.58
34874078--34874139	27	2.4	26	77	15	67	35	1	4	58	1.29
34874997--34875036	18	2.2	18	95	0	71	10	0	32	57	1.32
34877149--34877179	10	3.0	10	95	4	53	70	0	0	29	0.87
34881708--34881858	73	2.1	74	87	3	216	29	19	24	26	1.98
34889340--34889373	12	2.9	12	86	4	52	32	0	0	67	0.91
34889499--34889561	30	2.1	30	93	0	108	57	11	3	28	1.49
34902883--34902992	49	2.2	50	80	4	116	40	5	10	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34902995--34903028	13	2.5	14	90	9	61	52	11	0	35	1.38
34903402--34903512	48	2.3	49	87	1	152	39	2	5	52	1.39
34907278--34907333	25	2.2	25	87	12	80	32	23	19	25	1.98
34908687--34909749	534	2.0	534	90	1	1702	36	17	15	31	1.90
34920909--34920943	13	2.7	13	100	0	70	51	0	17	31	1.45
34920909--34920941	6	5.0	7	85	14	52	54	0	15	30	1.41
34939493--34939579	43	2.0	44	86	2	122	31	25	16	27	1.96
34944767--34944803	15	2.5	15	100	0	74	24	32	8	35	1.85
34947097--34947183	43	2.0	44	88	6	133	29	22	16	31	1.96
34948531--34948577	23	2.0	23	87	0	67	21	10	25	42	1.85
34957793--34957876	43	2.0	43	87	0	123	29	14	20	35	1.92
34972633--34972859	41	5.5	41	94	0	391	23	26	20	29	1.99
34972632--34972913	123	2.3	123	85	4	383	24	26	19	29	1.98
34978408--34978667	101	2.6	101	82	4	305	27	23	15	33	1.95
34981197--34981249	26	2.0	26	100	0	106	43	15	22	18	1.87
34988268--34988322	27	2.0	27	85	0	74	47	0	5	47	1.25
34992621--34992651	16	1.9	16	93	0	53	19	6	29	45	1.75
34993411--34993451	19	2.2	19	86	4	57	29	12	2	56	1.49
34996698--34996726	2	14.5	2	100	0	58	0	48	0	51	1.00
35002601--35002674	27	2.7	29	78	18	77	62	1	0	36	1.04
35002593--35002662	27	2.5	26	76	15	70	55	1	0	42	1.08
35004826--35004855	15	2.0	15	93	0	51	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35005977--35006216	101	2.4	101	92	0	390	32	15	23	28	1.95
35006044--35006204	33	4.8	32	74	8	124	32	15	23	28	1.95
35009891--35010010	38	3.2	38	66	17	115	26	11	7	54	1.63
35009894--35010043	74	2.0	74	100	0	300	25	10	8	56	1.61
35010780--35010814	18	1.9	18	88	11	54	42	0	2	54	1.15
35013485--35013544	28	2.1	28	87	0	84	16	1	23	58	1.47
35027371--35027976	44	13.8	44	66	8	167	31	18	24	25	1.98
35027321--35027977	132	5.0	132	91	0	1064	30	19	24	25	1.98
35027321--35027977	265	2.5	264	93	0	1125	30	19	24	25	1.98
35027964--35027990	13	2.1	13	100	0	54	29	7	37	25	1.83
35033839--35033901	23	2.7	24	82	7	67	47	3	6	42	1.44
35046263--35046394	64	2.1	64	94	0	228	25	14	30	29	1.95
35051890--35051980	45	2.0	45	91	0	146	37	24	10	27	1.89
35061636--35061728	42	2.2	43	82	1	116	29	16	25	29	1.96
35067010--35067050	11	3.6	12	80	9	50	75	0	21	2	0.92
35069585--35069638	4	13.5	4	78	7	56	22	1	1	74	1.02
35081942--35082546	44	13.9	44	69	15	298	28	20	23	26	1.99
35081852--35082537	217	3.2	217	91	1	1081	28	20	22	27	1.99
35083990--35084032	21	2.1	20	86	4	59	23	0	6	69	1.12
35086773--35086797	3	8.3	3	100	0	50	36	0	0	64	0.94
35087130--35087158	14	2.1	14	100	0	58	51	13	13	20	1.75
35087574--35087621	22	2.3	22	89	7	73	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35097439--35097678	120	2.0	120	99	0	471	42	12	8	36	1.74
35098928--35098974	17	2.8	17	80	3	60	55	0	4	40	1.19
35101951--35101975	12	2.1	12	100	0	50	44	0	8	48	1.32
35105617--35105665	24	2.0	24	100	0	98	46	4	24	24	1.69
35118674--35118736	27	2.3	27	86	0	81	38	22	15	23	1.93
35119098--35119151	28	1.9	28	96	0	99	22	22	24	31	1.98
35126118--35126155	6	6.2	6	90	6	58	15	15	2	65	1.38
35126123--35126162	18	2.2	19	86	4	55	12	17	2	67	1.33
35126130--35126329	63	3.3	62	82	8	220	26	19	6	47	1.73
35126208--35126329	56	2.1	58	87	3	176	29	18	4	46	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173