genome.fa.s17.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  165  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49405830--49405998	11	16.9	11	67	22	72	37	2	0	59	1.10
49405918--49405998	30	2.7	30	83	11	87	38	2	0	59	1.11
49405825--49405998	39	4.4	39	90	5	260	37	2	0	59	1.10
49407041--49407083	22	2.0	22	86	4	61	39	0	4	55	1.20
49412819--49412928	41	2.6	43	81	5	118	24	16	27	31	1.96
49412774--49412928	43	3.7	42	73	14	149	24	16	27	32	1.96
49416515--49416634	59	2.1	58	95	1	213	42	9	5	42	1.60
49416628--49416697	22	3.0	23	81	10	79	45	2	2	48	1.32
49431222--49431261	3	13.3	3	84	10	55	67	0	0	32	0.91
49431224--49431275	12	4.1	12	81	16	52	69	1	0	28	0.99
49431721--49431774	21	2.7	19	81	10	72	38	14	9	37	1.79
49431730--49431773	21	2.1	21	100	0	88	38	13	9	38	1.77
49439497--49439580	31	2.7	30	83	8	98	45	2	7	45	1.44
49440070--49440108	17	2.3	16	86	8	51	69	2	2	25	1.14
49441975--49441999	12	2.1	12	100	0	50	24	28	0	48	1.52
49447130--49447202	31	2.4	31	86	2	103	34	10	9	45	1.72
49462893--49462934	18	2.3	19	91	4	68	30	2	0	66	1.04
49463720--49463758	19	1.9	19	85	10	51	74	5	0	20	1.01
49463734--49463828	39	2.5	36	80	12	118	71	1	2	25	1.03
49468464--49468535	17	4.0	16	69	23	54	45	18	8	27	1.77
49472514--49472557	20	2.1	21	83	4	54	65	0	0	34	0.93
49475118--49475146	14	2.1	14	100	0	58	34	6	6	51	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49486995--49487020	6	4.3	6	100	0	52	84	0	0	15	0.62
49488930--49488972	21	2.1	20	82	4	50	27	0	2	69	1.00
49489179--49489502	166	2.0	166	91	1	533	41	18	16	24	1.90
49490892--49490935	13	3.5	13	75	6	54	31	0	6	61	1.22
49490882--49490951	26	2.8	25	89	4	88	27	0	10	62	1.26
49490891--49490951	26	2.4	26	94	2	106	29	0	8	62	1.24
49490905--49490979	26	3.2	23	80	10	73	20	1	8	70	1.19
49497353--49497394	13	3.3	13	80	3	50	45	0	0	54	0.99
49498152--49498183	16	2.0	16	93	0	55	31	0	3	65	1.08
49506196--49506223	5	5.6	5	100	0	56	17	0	0	82	0.68
49512506--49512690	101	1.8	102	86	5	268	26	17	24	31	1.97
49512513--49512690	51	3.5	51	77	3	148	26	17	24	31	1.97
49512694--49512788	45	2.1	45	90	0	154	27	18	23	30	1.98
49512863--49512935	37	1.9	38	86	8	105	43	2	20	32	1.66
49518438--49518504	34	1.9	35	87	3	100	44	14	8	31	1.76
49520351--49520410	31	1.9	32	90	10	97	26	8	18	46	1.77
49522318--49522355	10	4.0	10	86	13	62	78	0	0	21	0.74
49522512--49522580	30	2.3	30	84	0	93	42	1	0	56	1.08
49524747--49524791	22	2.0	22	86	0	63	64	8	6	20	1.44
49537497--49537583	22	4.0	21	69	19	63	28	5	9	56	1.54
49537497--49537587	43	2.1	44	83	4	112	28	5	8	57	1.52
49537659--49537700	14	2.9	14	85	7	57	35	7	21	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49544952--49545012	30	2.0	30	93	0	104	59	13	3	24	1.49
49545039--49545077	14	2.8	14	84	0	51	64	10	5	20	1.44
49548850--49548884	16	2.1	17	89	5	54	42	5	0	51	1.25
49551473--49551500	11	2.5	11	100	0	56	67	0	0	32	0.91
49561353--49561426	29	2.5	31	84	4	89	20	12	14	52	1.73
49562901--49562930	13	2.3	13	94	0	51	70	3	0	26	1.03
49564815--49564900	44	2.0	44	90	0	136	27	23	17	31	1.97
49564612--49564870	133	2.0	132	83	5	335	30	23	17	28	1.97
49564903--49565814	88	10.4	88	89	2	1280	25	24	22	27	2.00
49566347--49566371	13	1.9	13	100	0	50	72	0	12	16	1.13
49567974--49568029	7	7.7	7	77	15	51	5	0	12	82	0.83
49567990--49568028	5	7.8	5	85	8	53	2	0	12	84	0.72
49567989--49568028	15	2.7	15	92	7	64	2	0	12	85	0.71
49573161--49573190	13	2.3	13	94	0	51	70	3	0	26	1.03
49577327--49577370	17	2.4	17	88	11	61	77	0	2	20	0.88
49577326--49577370	6	7.3	6	90	7	56	77	0	2	20	0.87
49583646--49583722	30	2.6	30	91	0	118	11	18	37	32	1.87
49584742--49584802	31	2.0	31	90	6	97	44	11	9	34	1.74
49587250--49587447	98	2.0	98	99	0	387	29	21	13	35	1.92
49594660--49594714	27	2.0	27	86	6	76	30	0	3	65	1.10
49594677--49594741	14	4.9	13	71	16	53	33	0	1	64	1.03
49596495--49596551	30	1.9	30	92	7	98	42	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49596491--49596564	30	2.6	27	80	17	87	41	1	1	55	1.17
49596521--49596570	26	1.9	25	84	15	66	40	2	2	56	1.22
49599629--49599661	17	1.9	17	93	0	57	27	0	12	60	1.32
49600873--49600931	23	2.6	22	79	10	66	40	18	6	33	1.77
49604347--49604387	2	20.5	2	94	0	73	51	46	0	2	1.14
49607234--49607287	16	3.5	15	78	12	56	66	0	1	31	1.02
49611103--49611166	20	3.2	19	79	16	67	65	0	1	32	1.02
49611090--49611166	40	1.9	40	86	5	111	59	0	1	38	1.06
49625184--49625209	2	13.0	2	100	0	52	50	0	0	50	1.00
49628060--49628123	28	2.4	27	74	10	69	32	6	6	54	1.50
49628102--49628150	22	2.3	21	82	10	55	30	2	4	63	1.24
49634678--49634735	20	3.2	19	68	31	54	43	1	15	39	1.57
49634660--49634735	35	2.2	34	88	6	109	43	2	13	40	1.57
49639354--49639421	35	1.9	35	91	5	111	42	2	14	39	1.61
49640692--49640738	15	3.1	15	74	17	51	29	4	0	65	1.11
49642900--49643003	40	2.4	42	76	15	115	17	8	4	69	1.32
49642912--49643005	40	2.3	41	80	10	129	17	7	4	71	1.26
49645218--49645321	3	35.3	3	75	7	88	30	6	2	59	1.38
49645614--49645640	13	2.1	13	100	0	54	14	0	0	85	0.61
49645612--49645645	13	2.9	11	84	16	50	17	0	0	82	0.67
49652438--49652479	7	5.9	7	86	5	57	59	2	35	2	1.23
49657404--49657701	46	6.9	44	75	11	224	32	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49657617--49657728	44	2.6	44	83	7	129	28	24	22	25	1.99
49658173--49658233	32	1.9	32	83	3	79	62	22	1	13	1.39
49659251--49659350	3	33.3	3	73	11	71	28	7	3	62	1.36
49659268--49659350	12	6.6	12	81	8	85	30	8	2	59	1.40
49659486--49659554	34	2.0	34	85	5	93	36	5	1	56	1.32
49662144--49662205	32	2.0	31	84	9	81	33	3	1	61	1.22
49676254--49676286	15	2.1	16	94	5	59	33	6	0	60	1.21
49676781--49676825	21	2.1	22	83	4	56	15	2	11	71	1.24
49677385--49677435	26	2.0	25	84	3	66	35	21	15	27	1.94
49682868--49682915	24	2.0	24	87	0	69	22	18	8	50	1.74
49685045--49685076	14	2.3	14	94	0	55	84	0	15	0	0.63
49685353--49685421	30	2.3	31	84	5	95	34	14	11	39	1.82
49688761--49688863	51	2.0	51	100	0	206	33	13	11	40	1.81
49698178--49698229	24	2.2	24	89	0	77	55	9	1	32	1.43
49699623--49699993	41	9.2	41	86	5	499	23	27	19	29	1.98
49699623--49699993	118	3.1	120	89	5	520	23	27	19	29	1.98
49699623--49699993	78	4.6	82	90	5	508	23	27	19	29	1.98
49700209--49700246	19	2.0	19	89	0	58	47	15	0	36	1.46
49707461--49707799	41	8.3	41	88	0	509	22	27	20	29	1.98
49707467--49707799	82	4.1	82	97	0	632	22	27	19	29	1.98
49708011--49708047	19	1.9	19	94	0	65	45	18	0	35	1.50
49715315--49715545	50	4.7	49	79	8	231	27	19	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49718553--49718696	69	2.1	70	81	6	168	57	2	2	37	1.25
49718646--49718674	14	2.1	14	93	6	51	62	0	0	37	0.96
49719322--49719353	3	10.7	3	100	0	64	65	0	0	34	0.93
49724743--49724770	3	9.3	3	100	0	56	0	32	0	67	0.91
49725362--49725504	68	2.1	69	82	10	168	58	1	2	38	1.19
49725454--49725482	14	2.1	14	93	6	51	62	0	0	37	0.96
49725919--49725946	6	4.7	6	100	0	56	14	0	0	85	0.59
49726087--49726112	3	8.7	3	100	0	52	65	0	0	34	0.93
49728037--49728084	5	9.6	5	100	0	96	39	0	0	60	0.97
49729721--49729786	30	2.2	30	91	5	107	33	4	0	62	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173