genome.fa.s17.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  56  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15856268--15856649	53	7.2	53	72	18	260	42	11	1	43	1.51
15856260--15856649	107	3.7	105	84	3	487	42	11	1	43	1.51
15856541--15856612	21	3.2	20	70	24	54	43	12	0	44	1.42
15862111--15862150	14	2.9	14	84	0	53	42	17	7	32	1.77
15862076--15862142	34	1.9	35	87	3	100	44	13	10	31	1.77
15864166--15864226	22	2.6	24	76	10	72	19	21	27	31	1.97
15864166--15864240	22	3.3	22	73	3	69	21	17	32	29	1.96
15865326--15865401	9	8.4	9	82	5	91	43	23	6	26	1.78
15865335--15865401	18	3.7	18	89	0	107	41	23	7	26	1.81
15865441--15865465	6	4.2	6	100	0	50	16	0	16	68	1.22
15866624--15866690	26	2.5	26	97	2	125	61	11	10	16	1.57
15871934--15871982	20	2.5	20	83	6	64	44	14	12	28	1.81
15873527--15873674	31	4.8	31	84	3	199	43	4	21	30	1.71
15873527--15873674	62	2.4	62	91	2	235	43	4	21	30	1.71
15874502--15874537	18	1.9	19	88	5	56	33	5	22	38	1.77
15880473--15880520	22	2.2	23	85	7	64	45	0	0	54	0.99
15901892--15901948	21	2.7	21	80	2	69	36	7	33	22	1.81
15901958--15902001	6	7.3	6	94	0	70	84	0	11	4	0.77
15902431--15902463	17	1.9	17	93	0	57	21	12	9	57	1.62
15906834--15906868	3	12.3	3	93	6	56	0	0	28	71	0.86
15909609--15909637	5	5.8	5	100	0	58	17	0	0	82	0.66
15910678--15910715	16	2.4	16	86	4	51	26	2	5	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15910679--15910721	3	14.0	3	80	4	50	27	2	4	65	1.25
15910685--15910740	22	2.7	20	83	10	69	25	3	3	67	1.22
15912511--15912545	3	12.3	3	93	6	56	0	0	28	71	0.86
15916283--15916310	3	9.3	3	100	0	56	0	0	32	67	0.91
15917563--15917602	20	2.1	18	86	9	53	55	10	5	30	1.54
15925022--15925056	3	12.3	3	93	6	56	0	0	28	71	0.86
15926295--15926372	38	2.1	38	82	0	93	25	5	16	52	1.64
15929329--15929387	30	2.0	30	96	0	109	42	13	6	37	1.71
15944923--15945207	41	6.9	40	84	7	322	18	20	32	27	1.96
15944923--15945207	82	3.5	82	84	4	369	18	20	32	27	1.96
15944920--15945257	123	2.8	123	82	6	382	19	20	30	29	1.97
15946225--15946357	7	19.0	7	72	14	71	17	0	41	41	1.49
15946221--15946331	14	7.9	14	74	6	80	18	0	37	44	1.50
15946253--15946310	21	2.7	21	94	2	98	13	0	44	41	1.44
15950867--15950977	43	2.6	43	85	2	152	22	14	29	33	1.94
15952656--15952780	62	2.0	62	100	0	250	35	9	20	34	1.86
15953537--15953573	14	2.6	14	95	0	65	37	24	27	10	1.88
15959376--15965173	703	8.2	702	83	2	6778	34	13	22	30	1.92
15965979--15966016	17	2.2	17	86	9	51	39	5	15	39	1.70
15967673--15967703	16	1.9	16	93	0	53	51	3	0	45	1.17
15974073--15974268	50	3.8	50	82	4	221	22	30	20	26	1.98
15974782--15974820	17	2.3	17	95	0	69	25	20	10	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15981319--15981366	16	2.9	16	77	17	53	22	12	0	64	1.27
15982316--15982348	17	1.9	17	93	0	57	39	0	9	51	1.34
15990856--15991116	40	6.5	40	76	1	200	36	16	29	18	1.93
15990878--15991100	120	1.9	120	80	3	261	37	15	29	17	1.91
15998815--15998888	34	2.2	34	82	4	87	31	22	18	27	1.98
15999350--15999867	27	19.3	26	82	4	525	19	16	20	44	1.87
15999361--15999867	108	4.7	108	84	4	603	18	15	20	44	1.87
16003185--16003276	39	2.4	39	88	0	139	17	32	18	31	1.94
16003185--16003297	39	2.9	37	81	12	120	17	32	17	31	1.94
16007186--16007476	29	10.0	29	73	5	228	23	28	13	35	1.92
16007201--16007512	59	5.3	59	76	5	301	23	28	12	35	1.91
16008786--16008847	29	2.1	29	85	5	81	17	17	8	56	1.64
16016049--16017289	409	3.0	415	94	1	2174	29	19	10	39	1.86
16020610--16020647	18	2.2	18	90	9	62	21	5	2	71	1.19
16026297--16026614	27	11.8	27	85	4	340	41	18	15	24	1.89
16026291--16026614	54	6.0	54	82	1	384	40	18	16	25	1.90
16026291--16026614	108	3.0	108	91	1	499	40	18	16	25	1.90
16026619--16026705	26	3.3	25	78	12	79	35	16	20	27	1.94
16026635--16026705	27	2.7	27	82	2	90	33	18	22	25	1.96
16026778--16026848	24	3.0	24	80	0	97	26	7	23	42	1.80
16026829--16026886	24	2.4	24	82	5	64	24	8	22	44	1.80
16026955--16027020	27	2.4	27	85	9	82	19	24	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16027058--16027228	32	5.4	32	82	6	204	21	20	19	38	1.94
16027056--16027230	64	2.7	65	85	5	232	21	20	20	37	1.94
16027220--16027283	22	3.0	20	75	11	56	17	20	18	43	1.88
16027220--16027265	21	2.1	21	84	4	56	19	15	17	47	1.82
16032319--16032356	20	1.9	20	89	10	60	34	0	5	60	1.19
16052323--16052389	33	2.0	33	97	0	125	19	26	1	52	1.55
16052682--16052863	50	3.6	50	82	2	213	19	28	23	28	1.98
16052682--16052863	100	1.8	100	84	0	247	19	28	23	28	1.98
16060849--16060928	41	2.0	40	85	2	106	31	22	18	27	1.97
16061212--16061296	42	2.0	42	95	0	152	28	11	7	52	1.63
16071801--16071876	27	2.7	28	82	8	84	52	3	18	25	1.62
16071818--16071898	27	3.0	27	82	7	94	53	6	17	23	1.66
16083434--16083468	17	2.1	17	94	0	61	54	8	11	25	1.64
16086203--16086245	20	2.2	20	83	8	52	34	4	4	55	1.41
16087899--16088554	208	3.2	207	87	0	916	30	18	21	29	1.97
16087899--16088627	208	3.5	207	84	1	895	31	18	21	28	1.97
16088973--16089005	14	2.4	14	90	10	50	21	0	21	57	1.41
16089345--16089390	22	2.1	22	88	8	67	26	2	36	34	1.69
16092050--16092090	18	2.3	18	88	12	59	43	12	2	41	1.55
16092120--16092176	19	3.2	19	76	19	68	42	0	1	56	1.10
16092183--16092552	18	19.4	20	65	23	99	50	18	0	30	1.52
16092259--16092673	9	47.0	9	66	16	102	49	18	1	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16092265--16092671	34	12.1	34	70	16	147	49	18	1	29	1.55
16092325--16092364	12	3.3	12	85	0	53	50	17	0	32	1.47
16092259--16092434	96	1.8	95	96	1	325	54	17	1	27	1.50
16092417--16092671	16	15.4	17	76	16	209	46	20	1	32	1.58
16092413--16092671	25	10.5	24	86	3	226	46	20	1	32	1.58
16092413--16092671	50	5.4	50	80	11	317	46	20	1	32	1.58
16098610--16098800	86	2.2	85	86	3	260	30	18	27	23	1.98
16098582--16098800	84	2.6	84	81	8	255	30	18	27	24	1.98
16098582--16098784	43	4.8	43	81	6	234	31	17	27	23	1.97
16103598--16103636	20	1.9	21	84	5	53	38	2	28	30	1.70
16121736--16121817	38	2.2	38	100	0	164	28	2	21	47	1.64
16121737--16121799	18	3.2	21	65	17	62	30	1	20	47	1.60
16138359--16138621	42	6.3	42	86	0	364	21	19	21	37	1.94
16139471--16139690	50	4.4	49	67	16	128	42	3	9	45	1.53
16139464--16139747	149	1.9	147	87	5	419	42	4	9	43	1.57
16143131--16143248	59	2.0	59	100	0	236	37	8	27	27	1.85
16143587--16143613	7	3.9	7	100	0	54	0	14	0	85	0.61
16148313--16148363	26	2.0	26	96	0	93	29	35	23	11	1.90
16148179--16148441	103	2.6	101	89	4	404	30	30	20	18	1.96
16148769--16148832	30	2.2	29	81	10	76	29	28	6	35	1.82
16148776--16148832	30	1.9	30	85	3	80	29	24	7	38	1.82
16155758--16155807	25	2.0	25	96	0	91	30	32	24	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16155627--16155881	99	2.6	99	87	6	365	31	30	19	19	1.96
16160788--16160837	25	2.0	25	96	0	91	30	32	24	14	1.94
16160889--16160938	25	2.0	25	96	0	91	30	32	24	14	1.94
16160758--16161004	101	2.4	101	91	2	406	30	29	20	19	1.97
16166323--16166382	23	2.7	23	72	12	61	53	1	5	40	1.33
16166510--16166543	3	11.3	3	100	0	68	67	0	0	32	0.91
16166568--16166624	6	9.2	6	81	7	60	75	5	5	14	1.15
16168043--16168690	50	12.9	50	66	11	308	22	20	23	32	1.98
16167979--16168701	100	7.2	100	88	0	1000	22	21	23	32	1.98
16168949--16169051	44	2.3	44	88	0	152	25	25	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173