genome.fa.s17.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  94  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29456009--29456180	89	1.9	88	92	3	292	55	7	6	30	1.54
29456237--29456282	18	2.6	18	82	0	56	58	4	4	32	1.37
29457443--29457478	14	2.6	14	100	0	72	11	16	30	41	1.83
29457667--29457704	16	2.4	16	86	4	51	65	2	10	21	1.35
29462460--29462494	13	2.8	12	83	8	52	31	11	0	57	1.34
29462945--29463014	16	4.4	16	77	0	68	27	22	2	47	1.66
29462945--29463014	32	2.2	32	84	0	86	27	22	2	47	1.66
29464390--29464445	24	2.3	24	96	0	103	66	7	8	17	1.42
29464554--29464619	19	3.3	20	83	12	82	33	0	1	65	1.02
29464555--29464619	20	3.3	18	81	14	76	33	0	1	64	1.03
29472102--29472154	27	2.0	27	96	0	97	32	22	13	32	1.92
29474919--29475017	2	50.0	2	93	2	83	39	0	49	11	1.38
29475674--29476404	364	2.0	364	89	2	1128	35	14	20	29	1.92
29476726--29476795	35	2.0	35	100	0	140	25	0	34	40	1.56
29479489--29479532	23	1.9	23	85	0	61	50	2	2	45	1.27
29481340--29481368	14	2.1	14	93	6	51	34	0	0	65	0.93
29487344--29487543	62	3.2	59	75	17	188	52	3	3	40	1.35
29487392--29487546	68	2.2	70	74	7	163	52	4	3	40	1.38
29489268--29489438	43	4.0	43	70	14	145	22	16	27	33	1.95
29497482--29497530	23	2.1	23	84	0	62	22	22	34	20	1.97
29497957--29498035	9	8.6	9	71	25	51	35	1	1	62	1.12
29497953--29497992	19	2.1	19	90	0	62	40	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29498006--29498039	16	2.0	18	88	11	54	35	5	0	58	1.22
29500581--29500633	20	2.7	20	82	5	63	41	28	16	13	1.86
29507721--29507753	17	1.9	17	93	0	57	30	24	24	21	1.99
29509110--29509212	25	4.2	25	83	1	109	32	18	25	24	1.97
29510869--29510919	21	2.4	21	78	12	52	15	1	9	72	1.19
29521449--29521476	14	2.0	14	100	0	56	50	7	21	21	1.72
29523935--29523964	15	1.9	16	93	6	53	60	0	0	40	0.97
29523923--29523966	22	2.0	21	87	12	63	61	0	0	38	0.96
29530073--29530100	14	2.0	14	100	0	56	50	7	21	21	1.72
29531602--29531646	19	2.3	20	82	17	60	33	2	0	64	1.06
29537444--29537652	29	7.1	30	71	10	135	23	24	13	37	1.92
29537459--29537652	59	3.3	59	84	2	264	24	24	12	38	1.90
29550165--29550200	17	2.0	17	89	10	54	52	8	0	38	1.32
29550650--29550675	9	2.9	9	100	0	52	0	19	0	80	0.71
29563653--29563875	40	5.6	39	83	7	211	26	27	21	25	1.99
29563653--29563876	39	5.7	40	85	6	253	26	27	21	25	1.99
29563653--29563836	79	2.3	79	85	4	228	26	27	21	25	2.00
29571655--29571839	79	2.3	82	84	7	238	25	27	22	24	2.00
29571636--29571839	40	5.1	40	82	8	238	25	27	22	25	2.00
29574092--29574641	114	4.9	112	89	1	776	27	20	26	26	1.99
29574544--29574694	73	2.1	72	91	1	239	29	19	23	27	1.98
29574872--29574902	14	2.2	14	94	0	53	29	0	29	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29575219--29575267	14	3.5	13	86	13	62	22	0	44	32	1.53
29575212--29575282	15	4.9	14	74	17	65	23	0	40	35	1.55
29575974--29576319	107	3.1	108	79	13	385	38	14	13	33	1.85
29576077--29576307	122	1.9	125	91	2	387	38	14	14	32	1.86
29581140--29581192	23	2.4	22	76	20	56	9	18	1	69	1.25
29585103--29585223	43	2.8	43	85	6	149	19	17	31	31	1.95
29585188--29585351	42	3.9	42	85	0	229	21	18	24	35	1.96
29585151--29585351	84	2.4	84	82	0	240	20	18	25	34	1.96
29585443--29585485	22	2.0	22	90	0	68	46	25	16	11	1.80
29586118--29586295	40	4.5	40	79	7	184	33	17	26	21	1.96
29586107--29586295	80	2.4	78	82	4	216	34	16	26	22	1.95
29587679--29587835	82	1.9	82	97	0	296	34	12	21	31	1.91
29607543--29607602	24	2.5	24	86	2	86	28	11	16	43	1.83
29608252--29608341	39	2.3	40	86	7	130	30	27	23	18	1.98
29610574--29610601	12	2.3	12	100	0	56	28	0	32	39	1.57
29615290--29615345	28	2.0	28	100	0	112	25	14	7	53	1.66
29615868--29615901	6	5.3	6	89	10	50	82	0	2	14	0.79
29620003--29620052	16	3.2	16	72	16	59	54	2	4	40	1.31
29619988--29620060	31	2.3	32	92	4	121	60	2	4	32	1.30
29619991--29620041	16	3.3	15	71	17	50	60	1	5	31	1.31
29620176--29620217	18	2.4	17	85	14	59	30	4	9	54	1.53
29621404--29621493	27	3.3	27	75	9	94	14	13	37	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29623922--29624082	33	4.9	33	82	3	148	45	14	19	19	1.85
29623922--29624082	66	2.5	66	79	4	175	45	14	19	19	1.85
29632025--29632068	22	2.0	21	83	12	54	40	0	0	59	0.98
29644602--29644793	45	4.3	45	80	4	208	40	17	18	23	1.91
29644602--29644793	90	2.1	90	83	3	235	40	17	18	23	1.91
29645676--29645729	20	2.7	20	94	0	90	51	5	22	20	1.67
29647225--29647267	13	3.5	13	75	18	56	46	16	2	34	1.60
29647223--29647269	23	2.0	23	95	0	85	44	17	2	36	1.60
29647227--29647276	23	2.2	23	88	0	73	50	14	2	34	1.54
29651710--29651764	20	2.8	20	80	2	67	70	3	1	23	1.12
29652619--29652684	13	5.5	13	76	20	81	48	15	0	36	1.45
29652617--29652686	23	3.0	23	97	0	131	47	15	0	37	1.46
29663255--29663438	50	3.7	49	79	6	185	27	22	27	22	1.99
29693075--29693108	17	1.9	18	94	5	61	32	38	29	0	1.58
29696322--29696360	16	2.4	16	95	0	69	58	2	0	38	1.12
29696615--29696782	52	3.1	55	82	5	209	39	11	14	33	1.82
29697360--29697490	60	2.2	60	81	8	133	59	9	0	30	1.34
29697734--29697782	20	2.5	20	90	6	73	34	16	38	10	1.82
29698491--29698660	88	1.9	88	91	0	277	24	28	17	30	1.97
29698455--29698680	43	5.2	43	77	6	199	25	28	16	28	1.97
29699029--29699099	21	3.4	21	92	0	115	4	49	14	32	1.62
29700747--29701571	44	18.7	44	93	3	1410	32	1	15	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29700747--29701571	174	4.7	176	95	3	1419	32	1	15	50	1.55
29701202--29701271	7	9.7	7	73	22	56	30	1	15	52	1.51
29701160--29701410	16	16.9	15	63	24	61	30	1	15	51	1.54
29700749--29701567	218	3.7	218	94	2	1417	32	1	15	50	1.55
29701551--29701598	20	2.7	17	84	12	53	27	0	20	52	1.47
29701583--29701756	9	19.1	9	65	20	51	34	1	17	46	1.58
29701552--29701623	25	3.1	24	82	9	71	30	0	22	47	1.52
29701572--29701656	41	2.1	41	84	0	107	34	2	20	43	1.64
29700747--29701676	399	2.3	398	90	4	1386	32	1	15	49	1.56
29701670--29701720	20	2.8	18	77	11	59	29	0	17	52	1.45
29702708--29703025	146	2.2	147	84	2	406	38	21	13	26	1.90
29702708--29703117	147	2.8	147	80	4	452	38	22	13	24	1.91
29704330--29704992	73	9.2	72	87	3	813	25	21	18	34	1.96
29704330--29704992	145	4.6	144	85	3	813	25	21	18	34	1.96
29705777--29705842	20	3.3	20	95	4	116	31	0	4	63	1.14
29705788--29705844	10	5.7	10	74	15	55	29	0	7	63	1.21
29711187--29711217	8	3.9	8	100	0	62	38	9	12	38	1.77
29712301--29712357	25	2.3	25	93	0	96	22	5	7	64	1.38
29718452--29718476	12	2.1	12	100	0	50	36	24	16	24	1.94
29720705--29720746	18	2.3	19	88	12	61	69	4	0	26	1.08
29724781--29724835	28	2.0	28	100	0	110	38	21	3	36	1.71
29725513--29725695	50	3.7	50	88	0	240	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29725676--29725714	19	2.1	19	100	0	78	30	30	10	28	1.90
29725626--29725764	69	2.0	69	95	0	251	23	30	17	28	1.97
29727576--29727611	18	2.0	18	100	0	72	33	33	5	27	1.80
29728152--29728212	30	2.0	32	90	6	99	31	1	45	21	1.61
29728158--29728220	30	2.1	30	85	8	83	33	1	44	20	1.61
29731008--29731056	9	5.4	9	95	0	80	40	24	10	24	1.86
29741879--29742027	35	4.2	35	82	0	145	12	14	32	40	1.84
29748126--29748175	22	2.3	21	79	3	55	30	14	6	50	1.66
29749746--29749800	26	2.1	26	96	0	101	43	9	10	36	1.72
29750060--29750108	21	2.3	21	85	0	62	22	30	26	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173