genome.fa.s17.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  48  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13132174--13132216	17	2.5	17	81	7	52	48	2	0	48	1.14
13132197--13132325	62	2.2	58	86	9	172	41	3	3	51	1.33
13140125--13140159	18	1.9	18	94	0	61	5	5	45	42	1.51
13142952--13142987	3	12.3	3	94	5	65	69	0	30	0	0.89
13145296--13145340	18	2.4	18	82	10	56	33	0	0	66	0.92
13145745--13145790	22	2.0	23	83	4	58	58	2	4	34	1.30
13150253--13150374	62	2.0	61	81	10	142	38	6	8	46	1.60
13153320--13153348	14	2.0	15	93	6	51	37	0	0	62	0.96
13153706--13153867	22	7.1	22	76	8	153	17	23	18	40	1.91
13153695--13153867	47	3.7	47	87	5	255	17	23	18	40	1.91
13162399--13162787	126	3.1	126	92	0	625	26	18	17	37	1.93
13162885--13163009	34	3.6	34	79	7	128	45	16	0	37	1.53
13170866--13170973	23	4.7	23	76	1	99	42	25	2	29	1.69
13170866--13170973	46	2.3	46	83	1	126	42	25	2	29	1.69
13171996--13172065	5	13.6	5	98	1	122	0	20	58	21	1.39
13174342--13174486	66	2.2	66	88	0	209	24	24	29	21	1.99
13175563--13175652	25	3.6	25	77	4	76	31	21	24	23	1.98
13177139--13177347	55	3.8	56	76	14	177	26	16	23	33	1.95
13177334--13177436	52	2.0	52	88	1	152	25	17	17	39	1.91
13184030--13184054	13	1.9	13	100	0	50	16	8	12	64	1.49
13192076--13192129	25	2.1	26	83	16	69	31	3	3	61	1.31
13193022--13193071	3	16.7	3	95	0	91	66	0	32	2	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13204950--13205058	38	2.8	40	75	15	104	53	7	8	31	1.58
13211948--13212054	20	5.3	20	78	4	117	41	21	29	7	1.80
13219308--13219422	51	2.2	52	81	4	135	43	5	17	33	1.71
13223814--13223851	20	1.9	20	94	0	67	44	15	0	39	1.47
13223819--13223861	20	2.2	20	86	0	59	46	20	2	30	1.63
13228260--13228315	29	2.0	28	85	3	76	30	26	3	39	1.73
13237433--13237473	18	2.2	19	87	12	59	60	9	4	24	1.47
13237530--13237573	23	2.0	23	86	4	63	68	13	6	11	1.39
13241140--13241197	28	2.1	28	100	0	116	37	6	0	55	1.27
13247459--13247502	14	3.1	14	84	12	63	29	0	25	45	1.54
13247459--13247498	21	1.9	21	84	0	53	30	0	25	45	1.54
13251631--13251663	15	2.3	15	89	5	50	30	0	0	69	0.88
13252550--13252574	13	1.9	13	100	0	50	28	40	8	24	1.83
13253634--13253676	21	2.0	21	82	8	52	34	0	6	58	1.25
13253659--13253732	37	2.0	36	84	10	96	45	1	4	48	1.29
13254814--13254854	15	2.5	17	80	11	59	65	0	0	34	0.93
13254820--13254876	22	2.6	22	76	13	55	57	1	0	40	1.09
13257342--13257388	22	2.1	22	84	7	60	51	4	8	36	1.52
13260138--13260171	12	2.8	12	90	0	59	70	0	0	29	0.87
13260138--13260175	12	3.1	12	92	3	58	68	0	0	31	0.90
13261518--13261560	22	2.0	22	86	9	61	53	4	0	41	1.21
13261516--13261572	23	2.5	23	80	11	64	54	3	0	42	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13262084--13262125	22	1.9	22	90	0	66	42	19	0	38	1.51
13264716--13264791	27	2.8	27	92	4	118	18	21	38	22	1.94
13264848--13264901	22	2.4	23	84	12	76	64	1	31	1	1.14
13269521--13269562	16	2.7	15	85	7	57	57	2	2	38	1.25
13269599--13269681	38	2.2	39	95	2	150	38	2	3	55	1.30
13269715--13269836	60	2.0	60	85	3	165	54	14	0	30	1.47
13269877--13269955	19	4.6	19	70	20	66	51	12	1	34	1.48
13269877--13270111	22	9.8	24	78	17	226	54	13	0	31	1.45
13269877--13270235	22	15.9	22	70	21	189	54	12	1	31	1.45
13269881--13270102	49	4.5	49	90	4	340	54	13	0	31	1.45
13270048--13270237	19	9.3	19	70	17	116	55	12	1	31	1.44
13269906--13270139	49	5.1	43	75	19	149	55	13	0	30	1.45
13270148--13270242	41	2.4	38	82	7	100	54	11	2	31	1.48
13270411--13270454	3	15.3	3	81	9	56	0	34	2	63	1.07
13270400--13270477	17	4.6	17	75	10	63	0	29	1	69	0.97
13270407--13270461	14	4.1	14	82	13	71	0	32	1	65	1.03
13270418--13270479	14	4.2	15	77	8	56	0	32	1	66	1.02
13271606--13271672	31	2.2	30	89	2	98	58	4	4	32	1.38
13275594--13275687	17	5.5	17	66	22	54	42	3	5	48	1.41
13277183--13277215	17	2.0	16	94	5	57	51	6	0	42	1.26
13288747--13288875	29	4.5	29	78	1	125	23	15	20	41	1.90
13289057--13289086	5	6.0	5	96	0	51	40	0	23	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13292969--13293035	31	2.2	31	97	0	125	32	2	17	46	1.64
13295708--13295765	22	2.6	22	81	7	64	41	17	5	36	1.72
13296549--13296835	100	2.9	99	92	2	448	27	23	20	28	1.99
13296573--13296840	50	5.4	50	70	1	223	27	24	19	28	1.99
13296990--13297190	44	4.8	44	78	15	151	30	25	16	27	1.97
13297057--13297121	34	1.9	34	90	0	103	30	24	21	23	1.99
13297091--13297211	44	2.8	44	88	2	181	31	28	15	24	1.96
13299186--13299211	13	2.0	13	100	0	52	38	23	7	30	1.83
13299735--13299800	25	2.6	25	83	9	71	56	6	18	19	1.62
13315130--13315183	19	2.8	18	78	13	63	53	5	0	40	1.24
13317715--13317790	11	7.4	11	76	18	58	36	2	0	60	1.11
13317693--13317799	49	2.2	49	91	3	171	33	2	0	63	1.09
13317695--13317778	39	2.2	38	87	8	125	34	2	0	63	1.08
13317746--13317805	21	3.0	20	76	9	68	40	1	0	58	1.08
13317773--13317812	21	1.9	21	89	0	62	37	2	0	60	1.11
13317772--13317826	21	2.5	20	80	13	56	38	1	3	56	1.28
13319284--13319595	30	10.4	30	75	12	205	37	13	25	24	1.91
13319284--13319595	89	3.5	89	78	9	278	37	13	25	24	1.91
13319283--13319595	119	2.6	119	86	3	414	37	13	24	24	1.91
13321589--13321630	19	2.2	19	80	12	50	57	2	0	40	1.12
13321590--13321630	20	2.1	19	86	4	55	58	2	0	39	1.11
13325102--13325195	41	2.3	41	98	0	179	30	20	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13326092--13326143	26	1.9	28	85	14	74	73	15	11	0	1.11
13329943--13329978	18	1.9	19	94	5	65	36	19	0	44	1.51
13334552--13334669	42	2.8	43	83	3	150	28	17	23	29	1.97
13334513--13334669	43	3.7	42	79	10	167	27	18	24	29	1.98
13337611--13337702	41	2.2	41	90	5	141	33	4	16	45	1.67
13342091--13342135	23	2.0	23	90	0	72	57	4	6	31	1.44
13342184--13342483	24	12.8	24	69	14	153	54	4	5	35	1.44
13342215--13342474	69	3.7	69	76	10	181	54	5	5	35	1.45
13343258--13343333	19	3.7	21	76	16	61	36	15	7	39	1.77
13343261--13343305	22	2.0	22	86	4	63	33	17	6	42	1.76
13343284--13343337	19	2.8	20	88	8	85	35	14	9	40	1.78
13343729--13343811	42	2.0	42	82	15	102	38	10	14	36	1.81
13346125--13346168	22	2.0	22	100	0	88	50	4	13	31	1.62
13346344--13346368	9	2.8	9	100	0	50	76	0	0	24	0.80
13353407--13353491	13	6.4	13	72	10	55	43	2	18	35	1.63
13353407--13353492	40	2.2	40	82	4	111	44	2	18	34	1.63
13353414--13353475	27	2.3	26	83	8	72	40	3	19	37	1.68
13354379--13354435	30	1.9	30	88	0	87	17	26	26	29	1.97
13355899--13355950	23	2.3	23	82	0	68	34	11	15	38	1.83
13364335--13364423	44	2.0	44	97	0	169	37	21	14	26	1.92
13368581--13368627	21	2.2	22	92	3	78	21	19	38	21	1.94
13373946--13374003	29	2.0	30	83	10	75	46	3	0	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13376835--13376866	12	2.6	13	85	14	50	56	6	0	37	1.25
13402600--13402715	57	2.0	57	96	0	214	40	13	18	27	1.88
13418964--13418995	12	2.5	13	95	5	57	68	0	0	31	0.90
13420945--13420987	21	2.2	20	88	12	63	41	4	2	51	1.35
13436465--13436553	43	2.1	43	100	0	178	29	20	20	30	1.97
13450650--13450711	27	2.3	27	79	17	67	29	4	1	64	1.23
13467470--13467522	8	6.4	8	75	16	54	66	3	0	30	1.10
13467452--13467522	34	2.1	34	94	0	124	61	5	1	30	1.27
13472037--13472110	22	3.3	22	71	17	71	47	12	18	21	1.81
13472013--13472111	45	2.2	45	87	3	137	48	12	18	21	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173