genome.fa.s17.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  149  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45136740--45136786	23	2.1	21	84	7	58	46	0	4	48	1.21
45136767--45136829	29	2.3	26	76	13	63	57	1	1	39	1.18
45136796--45136831	18	2.0	18	88	0	54	55	0	0	44	0.99
45136795--45136836	18	2.4	18	80	7	52	59	0	0	40	0.97
45138972--45139007	16	2.2	17	90	9	58	77	0	22	0	0.76
45139345--45139382	20	1.9	20	84	10	51	60	0	10	28	1.30
45142013--45142055	23	1.9	22	85	4	59	55	16	9	18	1.67
45143364--45143439	9	8.4	9	78	11	84	38	22	11	27	1.89
45143364--45143439	27	2.8	27	82	7	100	38	22	11	27	1.89
45143479--45143507	6	4.8	6	100	0	58	17	0	17	65	1.27
45143463--45143520	18	3.0	20	82	12	66	22	3	12	62	1.45
45143554--45143596	18	2.4	18	88	0	59	11	2	44	41	1.53
45144293--45144318	12	2.2	12	100	0	52	53	0	0	46	1.00
45148147--45148204	25	2.3	25	84	0	71	20	29	18	31	1.97
45148222--45148276	24	2.2	25	83	3	67	21	21	21	34	1.97
45151484--45151526	19	2.2	20	84	12	54	34	9	2	53	1.46
45154127--45154156	12	2.5	12	94	0	51	36	36	0	26	1.57
45155444--45155489	3	15.3	3	100	0	92	32	0	0	67	0.91
45166489--45166539	17	2.9	18	76	5	59	41	5	25	27	1.78
45168100--45168142	20	2.2	20	100	0	86	23	16	13	46	1.83
45169042--45169480	54	8.1	53	80	7	339	19	16	19	44	1.87
45169037--45169480	81	5.4	80	79	9	357	19	16	19	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45169217--45169281	33	2.0	33	90	0	103	18	13	21	46	1.84
45169042--45169471	27	15.8	26	77	9	242	19	16	20	44	1.87
45169084--45169335	84	3.0	86	78	9	236	21	15	19	43	1.87
45169058--45169480	165	2.6	159	78	11	365	19	16	19	44	1.87
45172171--45172209	19	2.1	19	85	0	51	79	0	7	12	0.93
45173839--45173868	14	2.1	15	93	6	53	76	0	10	13	1.01
45178209--45178239	16	1.9	16	100	0	62	51	0	9	38	1.35
45178212--45178253	20	2.2	18	91	8	66	52	0	4	42	1.22
45180665--45180740	37	2.1	37	82	9	93	67	2	2	27	1.18
45191057--45191133	11	7.0	11	75	11	77	41	0	35	23	1.55
45191056--45191133	33	2.4	33	80	4	95	41	0	34	24	1.55
45198108--45198140	15	2.2	15	100	0	66	39	6	15	39	1.72
45198662--45198702	18	2.3	18	91	4	66	41	7	29	21	1.80
45200447--45200507	32	1.9	32	86	6	88	40	0	26	32	1.56
45205780--45205837	17	3.2	17	76	16	55	50	0	25	24	1.50
45212301--45212348	9	5.0	9	80	12	51	70	4	0	25	1.04
45219647--45219730	25	3.4	25	86	3	89	19	29	19	32	1.96
45219663--45219754	25	3.7	25	85	0	103	17	27	21	33	1.96
45221051--45221100	25	2.0	25	92	7	84	44	0	4	52	1.20
45221988--45222121	43	3.1	43	76	5	137	23	17	26	32	1.96
45236932--45236974	16	2.7	16	86	10	61	34	0	0	65	0.93
45237673--45237781	53	2.1	53	89	3	166	37	11	14	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45238467--45238529	33	1.9	33	86	0	90	17	23	15	42	1.88
45245437--45245492	20	2.8	20	80	0	67	48	8	3	39	1.52
45250214--45250269	27	2.1	27	100	0	112	41	14	10	33	1.80
45261512--45261537	7	3.7	7	100	0	52	30	15	15	38	1.88
45266227--45266287	17	3.4	17	72	20	52	29	1	1	67	1.10
45266224--45266290	19	3.6	19	73	15	59	31	1	1	65	1.10
45266227--45266303	37	2.1	37	83	13	97	31	2	1	64	1.15
45283094--45283134	3	13.7	3	100	0	82	31	0	0	68	0.90
45286240--45286283	20	2.2	20	95	0	79	13	18	25	43	1.86
45286195--45286325	64	2.0	65	97	1	246	21	18	22	38	1.94
45294222--45294290	32	2.2	31	84	7	86	17	11	15	55	1.70
45296770--45296842	22	3.2	22	63	32	55	26	24	10	38	1.88
45296729--45296867	46	3.0	46	91	0	233	28	25	10	35	1.89
45298025--45298072	17	2.9	17	90	3	71	54	18	0	27	1.44
45300556--45300615	31	1.9	32	89	3	95	33	8	15	43	1.76
45301724--45301766	22	2.0	22	85	0	59	55	9	13	20	1.66
45323016--45323055	18	2.2	18	91	8	64	75	7	0	17	1.03
45323017--45323068	24	2.1	25	82	3	61	69	7	1	21	1.24
45324449--45324492	21	2.0	21	87	12	63	59	0	0	40	0.98
45336693--45336743	26	2.0	26	84	0	66	31	3	25	39	1.74
45336693--45336743	13	3.9	13	75	10	50	31	3	25	39	1.74
45343762--45343800	16	2.6	14	84	11	51	23	2	0	74	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45347423--45347476	20	2.7	20	73	2	54	35	5	11	48	1.62
45356834--45356866	10	3.2	10	91	8	57	63	0	0	36	0.95
45356834--45356866	11	3.1	11	95	4	59	63	0	0	36	0.95
45359071--45359096	6	4.3	6	100	0	52	69	15	15	0	1.20
45363053--45363139	3	28.7	3	79	6	95	34	3	1	60	1.21
45367344--45367447	44	2.5	40	75	15	111	31	28	4	34	1.78
45367360--45367450	45	2.0	44	87	2	128	34	28	5	31	1.80
45367429--45367475	16	2.9	16	90	0	67	34	34	0	31	1.58
45367431--45367482	16	3.2	16	88	0	59	36	32	0	30	1.58
45372035--45372088	19	2.9	18	78	10	56	50	5	0	44	1.25
45372035--45372073	18	2.1	19	85	4	53	53	5	0	41	1.23
45372260--45372290	16	1.9	16	93	0	53	38	6	6	48	1.55
45372699--45372732	14	2.3	15	90	5	52	26	0	0	73	0.83
45374855--45374881	2	13.5	2	100	0	54	0	48	0	51	1.00
45383011--45383048	16	2.4	16	100	0	76	21	15	34	28	1.94
45402294--45402336	2	21.5	2	85	0	59	46	2	4	46	1.36
45403485--45403545	27	2.3	27	80	5	70	19	29	24	26	1.99
45403748--45403827	40	2.0	40	95	0	142	28	12	7	51	1.67
45405679--45405753	39	1.9	39	86	0	105	40	8	5	46	1.56
45408576--45408621	19	2.4	19	92	3	74	34	0	0	65	0.93
45408576--45408621	9	4.7	10	78	13	51	34	0	0	65	0.93
45408585--45408646	10	6.5	10	74	9	58	33	0	1	64	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45408590--45408642	19	2.8	18	85	5	61	39	0	1	58	1.09
45409901--45409947	15	2.8	17	75	18	53	31	4	4	59	1.36
45414911--45414947	18	2.1	18	90	10	58	35	5	0	59	1.20
45415062--45415092	5	6.0	5	92	7	53	19	0	0	80	0.71
45415065--45415116	11	4.3	12	80	20	56	17	5	1	75	1.10
45415062--45415092	16	1.9	16	100	0	62	19	0	0	80	0.71
45415266--45415337	29	2.4	28	82	11	81	40	8	20	30	1.82
45420148--45420172	10	2.5	10	100	0	50	92	0	8	0	0.40
45420153--45420501	106	3.2	107	82	8	459	39	14	16	29	1.87
45420173--45420493	112	3.0	105	89	5	473	36	15	16	31	1.91
45420604--45420984	109	3.5	108	82	12	478	32	15	12	39	1.85
45420661--45421008	102	3.3	102	86	7	391	31	17	14	36	1.90
45425044--45425072	4	7.2	4	100	0	58	24	0	0	75	0.80
45426396--45426434	10	3.8	10	80	6	51	0	28	0	71	0.86
45428899--45428996	46	2.2	45	82	8	121	48	0	12	38	1.41
45430522--45430887	40	8.7	40	71	14	173	24	21	22	31	1.98
45430563--45430979	130	3.2	130	92	2	687	24	19	22	33	1.97
45430988--45431247	44	5.9	44	77	2	245	31	26	15	26	1.95
45430987--45431252	132	2.0	132	94	0	469	30	26	15	27	1.96
45432155--45432198	5	8.4	5	85	9	61	2	18	0	79	0.83
45432139--45432200	17	3.6	17	81	14	74	1	16	1	80	0.87
45432139--45432198	22	2.6	23	89	5	86	1	16	1	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45432667--45432691	11	2.3	11	100	0	50	0	0	8	92	0.40
45435303--45435338	18	2.0	18	88	0	54	2	8	11	77	1.08
45436786--45436867	43	1.9	43	80	9	96	39	10	26	23	1.88
45441810--45441873	26	2.4	27	82	12	78	37	3	0	59	1.13
45442877--45442943	18	3.4	19	82	17	68	62	1	5	29	1.28
45443534--45443569	15	2.3	16	90	4	56	83	8	2	5	0.89
45450264--45450302	16	2.5	15	88	12	53	71	0	0	28	0.86
45450789--45450831	21	2.0	23	86	9	63	76	6	2	13	1.08
45466842--45466904	32	2.0	32	93	0	108	34	0	15	49	1.45
45467529--45467590	29	2.1	30	93	3	108	40	6	14	38	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173