genome.fa.s17.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  150  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45472175--45472241	27	2.5	27	85	0	89	11	38	20	28	1.88
45472404--45472451	25	1.9	25	95	0	87	33	6	2	58	1.35
45473220--45473263	22	2.0	22	86	8	63	25	0	13	61	1.32
45474532--45474767	116	2.0	117	94	0	411	26	17	13	41	1.88
45475360--45475574	71	3.0	72	73	5	220	33	7	13	45	1.71
45475332--45475551	72	3.1	72	75	3	237	33	5	13	46	1.67
45475580--45475634	28	2.0	28	92	0	92	21	20	10	47	1.80
45475728--45475767	19	2.3	17	87	12	55	72	5	12	10	1.26
45475966--45476008	19	2.2	20	87	4	61	32	2	2	62	1.20
45476295--45476320	12	2.2	12	100	0	52	46	7	0	46	1.31
45476529--45476555	13	2.1	13	100	0	54	51	0	11	37	1.37
45476622--45476762	18	7.5	17	67	19	75	49	15	0	34	1.50
45476602--45476771	36	4.6	36	85	11	227	48	16	0	34	1.51
45476616--45476770	79	2.0	79	97	0	292	49	16	0	34	1.51
45485164--45485206	22	2.0	21	86	4	59	79	0	2	18	0.85
45497755--45497795	22	1.9	22	85	5	57	24	9	21	43	1.83
45500029--45500225	98	2.0	98	92	0	331	38	23	9	28	1.86
45500905--45500990	37	2.3	37	80	9	104	53	2	6	37	1.41
45504283--45504325	22	2.0	22	81	9	52	53	4	2	39	1.34
45513610--45513650	13	3.1	13	82	6	55	0	19	7	73	1.07
45513615--45513657	14	3.2	14	83	9	54	0	16	9	74	1.06
45513614--45513657	12	3.4	13	84	6	54	0	15	11	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45514383--45514444	26	2.4	25	77	15	63	30	1	6	61	1.31
45514411--45514453	15	2.8	16	79	10	54	34	0	2	62	1.08
45518413--45518454	22	1.9	22	85	9	59	28	4	4	61	1.36
45518565--45520839	757	3.0	757	99	0	4514	32	17	15	34	1.91
45521715--45521765	20	2.4	22	83	6	61	64	7	0	27	1.21
45541046--45541086	3	13.7	3	89	0	64	0	39	0	60	0.96
45546373--45546445	35	2.1	35	92	0	119	27	9	19	43	1.81
45549203--45549249	17	2.7	17	81	12	51	61	2	2	34	1.20
45549360--45549402	3	14.3	3	100	0	86	67	0	0	32	0.91
45550377--45550408	16	1.9	17	93	6	57	9	25	50	15	1.74
45552339--45552381	15	2.6	17	82	7	54	58	2	0	39	1.11
45552988--45553026	17	2.2	19	86	9	55	38	0	0	61	0.96
45552988--45553041	28	2.0	27	85	10	74	40	1	0	57	1.09
45558981--45559092	47	2.4	47	90	0	170	42	9	8	38	1.69
45559093--45559163	37	1.9	37	97	0	133	47	15	5	30	1.68
45559102--45559162	17	3.4	17	68	12	50	50	14	3	31	1.59
45559093--45559184	37	2.5	37	87	7	116	46	15	5	32	1.68
45559279--45559326	24	2.0	23	84	4	60	29	0	2	68	1.01
45561100--45561191	2	46.0	2	95	0	157	48	47	1	2	1.20
45568363--45568398	16	2.2	17	90	5	56	47	8	5	38	1.57
45580872--45580964	44	2.1	44	88	9	136	35	26	4	33	1.76
45580953--45580983	16	1.9	16	100	0	62	25	32	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45584718--45584752	14	2.5	14	90	9	54	57	5	0	37	1.23
45584796--45584833	19	2.0	19	100	0	76	21	26	10	42	1.85
45584935--45584976	20	2.1	20	86	8	59	59	9	2	28	1.41
45585012--45585054	23	1.9	23	86	13	63	76	4	0	18	0.95
45585437--45585535	5	19.4	5	73	13	62	4	35	0	60	1.16
45585428--45585526	23	4.2	23	75	12	94	4	33	0	62	1.14
45585428--45585535	45	2.4	45	87	3	144	3	34	0	62	1.13
45587362--45587442	21	3.9	21	78	12	94	22	7	13	56	1.62
45587367--45587568	42	4.7	42	80	6	183	20	10	12	55	1.67
45587388--45587458	21	3.4	20	76	7	79	22	11	12	53	1.70
45587414--45587543	46	2.8	47	81	8	142	21	10	12	55	1.67
45589616--45589648	10	3.5	10	84	16	52	48	12	0	39	1.40
45591577--45591643	18	3.7	18	70	4	53	38	5	0	55	1.25
45591633--45591682	14	3.8	13	78	17	50	52	4	0	44	1.20
45591798--45591838	21	2.0	20	86	13	57	73	0	12	14	1.11
45593047--45593081	18	1.9	18	94	0	61	51	17	14	17	1.77
45598824--45598859	16	2.2	16	90	0	54	41	2	0	55	1.14
45600954--45600994	20	2.0	20	90	0	64	73	0	2	24	0.96
45600946--45600998	9	5.7	9	76	8	52	71	0	1	26	0.96
45601858--45601887	7	4.4	7	95	4	53	46	10	0	43	1.37
45604641--45604728	25	3.6	25	81	4	99	32	19	23	23	1.97
45607717--45607776	20	2.8	21	82	10	77	38	3	0	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45612802--45612848	20	2.3	20	82	7	51	31	10	0	57	1.33
45613884--45613924	19	2.0	21	86	9	59	60	2	12	24	1.43
45621771--45622075	109	2.8	110	86	4	424	34	19	15	30	1.93
45623726--45623752	13	2.1	13	100	0	54	7	22	33	37	1.82
45641085--45641146	32	2.0	32	93	3	108	32	8	11	48	1.68
45642564--45642605	20	2.1	20	86	0	57	52	0	2	45	1.13
45651931--45652083	43	3.6	43	91	3	220	30	26	18	24	1.98
45651932--45652120	43	4.4	43	87	6	179	29	26	17	25	1.98
45657390--45657562	71	2.4	71	79	3	179	24	15	24	35	1.94
45657550--45657601	19	2.7	19	96	0	95	23	21	28	26	1.99
45658318--45658447	19	6.7	19	64	5	64	17	17	26	38	1.92
45658320--45658431	58	1.9	58	90	0	179	17	16	25	39	1.91
45658320--45658447	58	2.2	58	87	0	175	17	17	25	38	1.92
45663158--45663193	16	2.2	17	95	5	65	47	0	8	44	1.33
45670237--45670311	29	2.5	29	82	4	87	48	16	12	24	1.79
45672931--45672970	18	2.2	18	90	0	62	22	10	7	60	1.54
45675878--45675918	3	13.3	3	84	5	55	29	2	2	65	1.18
45675874--45675921	22	2.1	23	92	3	80	29	2	4	64	1.23
45675936--45675981	20	2.3	20	85	10	67	28	0	4	67	1.10
45675938--45675981	19	2.3	19	92	4	70	27	0	4	68	1.09
45676196--45676240	22	2.0	22	83	8	56	13	13	8	64	1.49
45676307--45676345	4	9.5	4	83	5	51	25	5	0	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45688879--45688920	20	2.2	19	83	12	50	35	2	0	61	1.09
45689220--45689293	28	2.5	29	81	14	89	56	1	0	41	1.07
45701361--45701393	13	2.6	13	95	4	59	66	0	0	33	0.92
45702018--45702044	13	2.1	13	100	0	54	51	0	11	37	1.37
45707604--45707737	66	2.0	65	84	5	171	43	17	26	12	1.85
45708033--45708220	43	4.4	43	81	2	198	25	15	27	31	1.95
45708033--45708220	86	2.2	86	82	1	234	25	15	27	31	1.95
45709249--45709300	20	2.6	20	90	0	86	15	15	28	40	1.88
45709663--45709695	14	2.3	15	94	5	59	6	3	15	75	1.11
45710550--45710593	21	2.2	20	84	12	54	40	6	0	52	1.28
45711275--45711340	22	3.1	22	82	4	73	36	7	21	34	1.82
45711172--45711426	135	1.8	135	80	10	298	33	6	14	45	1.70
45711364--45711403	21	1.9	21	90	10	64	25	2	7	65	1.32
45714952--45714998	24	2.0	24	83	8	60	53	8	6	31	1.57
45716308--45716341	3	11.7	3	93	6	61	64	0	35	0	0.94
45716520--45716577	25	2.3	25	96	3	107	36	0	6	56	1.26
45716756--45716828	16	4.4	16	66	24	53	20	0	12	67	1.23
45718834--45718865	8	4.0	8	95	0	55	50	21	0	28	1.49
45718859--45718938	27	3.2	26	63	26	64	47	10	8	33	1.68
45718852--45718944	48	1.9	48	97	0	177	48	10	7	33	1.66
45723177--45723243	27	2.5	26	79	9	73	31	0	1	67	1.00
45723182--45723238	10	6.1	10	70	15	50	33	0	1	64	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45723179--45723242	17	3.8	16	78	15	67	31	0	1	67	1.00
45724777--45724822	18	2.4	19	79	17	51	15	0	6	78	0.95
45732139--45732218	41	2.0	41	89	0	124	27	18	22	31	1.97
45732139--45732245	41	2.6	41	83	2	108	28	17	22	30	1.97
45740334--45740386	11	4.7	12	77	13	58	50	0	0	49	1.00
45740329--45740386	12	5.0	12	77	14	59	53	0	0	46	1.00
45740316--45740385	33	2.1	33	81	5	79	57	0	0	42	0.99
45740329--45740386	22	2.5	23	86	5	82	53	0	0	46	1.00
45744980--45745035	26	2.2	26	83	0	67	32	1	3	62	1.23
45747761--45747919	35	4.5	35	91	0	246	16	10	30	42	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173