genome.fa.s17.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  151  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45752105--45752137	15	2.1	16	88	5	50	72	3	3	21	1.11
45752173--45752197	12	2.1	12	100	0	50	76	0	0	24	0.80
45762298--45762329	6	5.7	6	85	14	50	81	0	0	18	0.70
45769307--45769343	19	1.9	19	100	0	74	62	0	0	37	0.96
45769561--45769619	30	2.0	29	93	3	100	49	3	1	45	1.28
45769564--45769624	7	8.3	7	80	10	68	47	1	1	49	1.21
45769729--45769767	18	2.2	17	90	4	60	64	7	2	25	1.33
45774175--45774251	32	2.4	32	80	0	91	44	6	24	24	1.77
45778680--45778756	32	2.4	32	80	0	91	44	6	24	24	1.77
45779354--45779412	30	2.0	30	89	0	91	59	8	5	27	1.48
45780710--45782325	231	7.0	231	99	0	3191	17	30	16	36	1.92
45780710--45782325	692	2.3	692	99	0	3189	17	30	16	36	1.92
45785423--45785576	26	5.2	31	65	26	84	43	0	3	51	1.24
45785363--45785971	120	5.1	120	93	2	1055	42	1	4	51	1.29
45785557--45785594	18	2.2	17	90	4	58	36	2	0	60	1.11
45785799--45785833	17	2.1	17	100	0	70	34	0	0	65	0.93
45785363--45785958	239	2.5	240	95	2	1058	42	1	4	51	1.29
45786112--45786207	45	2.2	44	83	5	113	38	27	3	31	1.72
45786197--45786257	16	3.8	16	82	0	86	26	27	4	40	1.76
45786184--45786253	32	2.2	32	89	0	104	27	25	2	44	1.68
45789527--45789560	16	2.1	16	88	0	50	0	17	0	82	0.67
45794672--45794697	13	2.0	13	100	0	52	46	7	0	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45798854--45798906	23	2.3	23	86	0	79	37	16	13	32	1.88
45802567--45802613	22	2.0	25	84	12	64	46	0	17	36	1.48
45805101--45805168	30	2.2	31	79	10	77	33	2	8	54	1.47
45808130--45808257	57	2.2	60	82	13	160	42	15	14	27	1.86
45808130--45808273	57	2.5	58	80	11	143	44	15	13	26	1.84
45823343--45823411	31	2.2	31	84	5	86	53	4	1	40	1.30
45823421--45823463	22	2.0	22	85	0	59	55	4	0	39	1.20
45832050--45832087	19	2.0	19	94	0	67	28	0	28	42	1.56
45838602--45838626	4	6.2	4	100	0	50	48	28	0	24	1.52
45839762--45840037	151	1.8	151	92	0	471	27	30	17	24	1.97
45843117--45843162	25	1.9	23	86	8	65	54	4	2	39	1.32
45846109--45846145	10	3.5	11	86	13	51	75	2	0	21	0.92
45846651--45846694	18	2.4	19	88	3	63	20	11	0	68	1.20
45846650--45846695	19	2.4	20	82	10	60	19	10	0	69	1.17
45849503--45849547	20	2.2	20	84	0	63	77	2	0	20	0.87
45852288--45852480	96	2.0	96	100	0	386	35	25	8	31	1.85
45853933--45854128	51	3.9	51	79	3	216	30	29	17	22	1.97
45853933--45854124	101	1.9	101	86	3	278	30	28	17	22	1.97
45855268--45855333	21	3.2	21	65	4	62	53	1	13	31	1.49
45855256--45855339	41	2.0	41	100	0	168	45	2	14	38	1.58
45855467--45855527	16	3.9	15	81	10	68	45	8	18	27	1.77
45855504--45855597	44	2.1	44	84	7	118	35	6	22	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45861304--45861396	48	1.9	48	95	0	168	15	18	22	44	1.87
45870732--45870807	12	5.6	13	83	12	84	67	0	26	6	1.15
45870730--45870792	26	2.4	26	97	0	117	66	0	26	6	1.15
45870732--45870792	14	4.8	12	84	11	77	68	0	24	6	1.13
45870997--45871064	31	2.2	31	87	7	95	23	14	22	39	1.91
45877681--45877732	20	2.7	19	82	17	63	34	0	5	59	1.21
45877689--45877730	17	2.3	19	88	12	61	33	0	4	61	1.17
45877717--45877749	13	2.5	13	95	0	57	18	0	12	69	1.18
45893518--45893647	43	3.0	43	82	0	161	36	23	14	25	1.93
45901727--45901815	18	4.9	18	84	0	106	31	22	13	32	1.93
45901725--45901814	36	2.5	36	85	0	126	31	22	13	33	1.92
45908354--45908435	42	2.0	41	85	7	112	26	21	18	32	1.97
45908333--45908442	41	2.7	41	80	4	114	29	20	20	30	1.98
45908967--45909109	43	3.4	43	78	6	132	41	37	0	20	1.53
45909071--45909104	15	2.3	15	89	0	50	44	35	0	20	1.52
45909121--45909181	14	4.4	14	87	0	77	44	31	3	21	1.68
45909501--45909596	40	2.4	40	83	0	120	29	27	18	25	1.98
45909636--45909722	40	2.2	39	85	4	113	26	20	21	31	1.98
45912074--45912113	18	2.1	18	90	9	62	52	0	0	47	1.00
45913755--45913792	18	2.2	17	86	9	51	23	0	0	76	0.79
45915964--45915996	17	1.9	17	93	0	57	9	0	27	63	1.24
45926511--45926560	22	2.3	22	92	0	82	28	2	42	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45926640--45926686	22	2.2	22	84	3	60	25	0	42	31	1.55
45934985--45935043	29	2.0	30	83	3	75	50	11	6	30	1.65
45939645--45939694	24	2.1	24	88	0	73	54	2	2	42	1.23
45940862--45940954	18	5.2	18	84	0	114	29	22	15	33	1.94
45940862--45940954	36	2.6	36	89	0	141	29	22	15	33	1.94
45946094--45946128	12	2.8	12	86	4	52	40	2	0	57	1.14
45947441--45947488	21	2.3	21	86	10	64	66	0	2	31	1.03
45947472--45947505	17	2.0	17	94	0	59	61	0	5	32	1.20
45963614--45963653	20	1.9	22	90	10	66	47	0	0	52	1.00
45964750--45964774	10	2.5	10	100	0	50	64	0	0	36	0.94
45970649--45970674	12	2.2	12	100	0	52	7	15	30	46	1.74
45970663--45970791	40	3.2	40	80	14	126	31	20	26	20	1.98
45970680--45970791	40	2.8	40	87	2	154	33	22	25	18	1.96
45970851--45971146	41	7.2	41	88	3	425	19	21	30	28	1.97
45970852--45971146	124	2.4	124	89	3	436	19	21	30	28	1.98
45971269--45971295	13	2.1	13	100	0	54	33	7	22	37	1.82
45971349--45971395	22	2.2	21	81	11	51	25	0	25	48	1.51
45971354--45971482	29	4.4	30	69	18	76	24	0	28	46	1.58
45971444--45971482	20	1.9	21	94	5	71	17	0	28	53	1.44
45971755--45971816	21	3.0	21	85	0	79	27	0	37	35	1.57
45971779--45971817	14	2.8	13	85	11	51	30	0	38	30	1.58
45976402--45976488	43	2.0	43	86	0	120	33	11	12	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45976756--45976950	43	4.5	43	89	0	273	27	14	30	27	1.95
45979362--45979448	43	2.0	43	90	0	138	32	22	4	40	1.75
45980421--45980493	35	2.1	35	89	0	110	57	8	4	30	1.47
45982678--45982727	24	2.1	24	84	0	64	52	4	4	40	1.39
45988630--45988682	19	2.8	19	80	2	63	71	1	16	9	1.21
45996005--45996159	43	3.6	43	80	4	154	30	27	18	24	1.98
45996688--45996726	19	2.0	20	85	9	55	51	28	0	20	1.48
46000092--46000127	19	2.0	17	89	10	54	44	5	16	33	1.71
46000098--46000142	23	2.0	23	86	4	65	40	4	17	37	1.70
46000336--46000380	23	2.0	23	86	4	65	40	4	17	37	1.70
46000096--46000568	238	2.0	238	99	0	928	27	15	17	38	1.90
46007628--46008083	45	10.2	44	77	5	362	31	18	22	26	1.97
46007629--46008061	89	4.9	89	77	5	424	31	19	22	26	1.98
46008323--46008503	44	4.1	44	66	11	118	29	20	23	26	1.99
46008293--46008684	132	3.0	132	86	2	538	28	19	24	26	1.99
46009139--46009174	19	2.0	17	89	10	54	44	5	16	33	1.71
46009145--46009189	23	2.0	23	86	4	65	40	4	17	37	1.70
46015510--46015631	45	2.7	45	89	0	181	32	16	26	24	1.96
46017637--46017794	49	3.1	49	63	16	115	50	18	4	26	1.66
46017621--46017824	102	2.0	101	95	0	363	49	20	4	25	1.69
46017621--46017781	53	3.1	53	62	16	129	50	18	4	26	1.66
46018021--46018067	20	2.3	20	82	7	60	27	8	2	61	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46019008--46019050	17	2.5	17	85	7	61	41	9	4	44	1.57
46021302--46021363	31	2.0	31	93	3	108	40	12	6	40	1.69
46022222--46022525	123	2.4	124	83	8	368	33	14	24	28	1.94
46027731--46027832	51	2.0	51	100	0	204	29	33	23	13	1.93
46028857--46028887	13	2.4	13	94	0	53	25	22	19	32	1.97
46033869--46034000	71	1.9	71	81	0	165	49	9	23	17	1.76
46034323--46034412	28	3.2	28	83	9	103	42	11	27	18	1.84
46034357--46034404	13	3.5	13	72	10	51	37	12	31	18	1.88
46034361--46034440	30	2.8	28	81	7	97	45	12	25	17	1.83
46034361--46034470	58	1.9	58	83	7	143	45	10	25	19	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173