genome.fa.s17.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  171  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51552977--51553029	23	2.3	24	78	15	58	16	13	0	69	1.18
51560315--51560355	21	2.0	21	90	0	64	29	21	29	19	1.98
51563104--51563161	30	1.9	30	82	10	73	43	13	12	31	1.81
51563973--51564081	53	2.0	52	89	5	164	45	10	11	32	1.74
51565910--51565951	20	2.1	20	100	0	84	42	9	14	33	1.78
51567547--51567656	36	3.1	36	97	0	202	21	17	19	41	1.90
51579505--51579580	25	3.1	25	80	14	104	31	18	7	42	1.79
51579494--51579569	23	3.2	22	80	14	89	28	15	9	46	1.77
51583091--51583131	21	2.0	21	81	18	50	21	26	19	31	1.97
51590793--51590825	14	2.4	14	90	5	50	15	0	39	45	1.46
51590884--51590928	20	2.2	20	92	0	72	24	8	35	31	1.86
51591257--51591299	19	2.2	20	91	4	70	81	2	2	13	0.89
51593738--51593790	23	2.3	23	90	0	88	32	28	20	18	1.97
51596749--51596830	40	2.0	40	83	0	101	45	6	3	45	1.46
51603760--51603810	18	2.8	18	78	0	66	50	13	15	19	1.77
51603749--51603807	6	9.8	6	77	0	55	52	15	15	16	1.75
51610023--51610070	23	2.1	23	100	0	96	20	25	8	45	1.79
51610431--51613053	88	29.8	88	93	0	4403	24	25	22	27	2.00
51614120--51614166	21	2.2	21	85	7	60	23	38	12	25	1.90
51614258--51614290	16	2.1	16	94	0	57	15	9	0	75	1.03
51615139--51615182	18	2.4	18	96	0	79	11	0	6	81	0.86
51615141--51615180	8	4.8	8	82	11	53	12	0	7	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51615848--51615872	11	2.3	11	100	0	50	52	8	20	20	1.71
51617227--51617270	19	2.3	20	84	7	56	40	11	20	27	1.86
51622679--51622897	106	2.1	106	97	0	411	38	5	28	26	1.80
51623672--51624144	207	2.3	197	83	9	587	49	6	7	36	1.58
51624052--51624104	14	3.8	13	77	18	52	67	3	1	26	1.17
51625354--51625387	16	2.1	16	88	0	50	50	14	17	17	1.79
51628186--51628226	21	2.0	21	90	0	64	29	21	29	19	1.98
51631991--51632028	19	2.0	20	89	5	60	52	0	7	39	1.31
51636595--51636637	11	4.0	11	84	3	61	30	2	46	20	1.63
51636595--51636637	21	2.0	21	90	4	68	30	2	46	20	1.63
51640537--51640589	18	2.9	18	88	0	79	35	16	18	28	1.93
51641125--51641167	11	4.0	11	84	3	61	30	2	46	20	1.63
51641125--51641167	21	2.0	21	90	4	68	30	2	46	20	1.63
51643077--51643123	19	2.3	20	89	7	69	65	8	0	25	1.20
51643077--51643123	21	2.3	21	89	7	71	65	8	0	25	1.20
51656973--51657013	21	2.0	21	90	0	64	29	21	29	19	1.98
51667607--51667669	29	2.2	29	94	0	108	50	7	17	23	1.72
51667693--51667751	28	2.1	29	93	3	102	25	13	15	45	1.82
51668131--51668161	16	1.9	16	100	0	62	45	0	9	45	1.36
51677580--51677616	19	1.9	19	100	0	74	43	16	2	37	1.62
51680599--51680804	72	2.9	72	88	0	286	44	11	11	33	1.75
51681513--51681552	20	2.0	20	85	0	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51681632--51681713	40	2.0	40	92	0	137	45	7	1	46	1.39
51691849--51692107	73	3.5	73	98	0	500	28	6	24	40	1.79
51692718--51692763	18	2.6	18	85	0	65	47	8	17	26	1.76
51694708--51694751	18	2.4	18	85	11	54	20	0	9	70	1.14
51701580--51701672	18	5.2	18	85	0	123	35	17	20	26	1.94
51701581--51701672	36	2.6	36	89	0	139	35	17	19	27	1.94
51706765--51706922	73	2.2	73	97	0	298	35	20	12	31	1.90
51710567--51710670	52	2.0	52	100	0	208	32	15	13	38	1.86
51712416--51712545	43	3.0	42	82	10	174	22	19	28	30	1.98
51718731--51718799	33	2.1	33	86	5	95	40	4	7	47	1.51
51718767--51718792	13	2.0	13	100	0	52	38	0	7	53	1.30
51719413--51719447	14	2.6	13	86	8	52	74	2	2	20	1.08
51728373--51728406	17	2.0	17	94	0	59	44	50	0	5	1.26
51733003--51733036	17	2.0	17	94	0	59	44	50	0	5	1.26
51735175--51735233	25	2.3	24	83	11	57	59	6	6	27	1.48
51735504--51735551	14	3.2	14	74	25	53	0	18	10	70	1.15
51739528--51739572	21	2.3	20	85	14	60	66	6	0	26	1.16
51744304--51744360	27	2.2	26	81	9	62	43	3	8	43	1.52
51757686--51757737	21	2.5	21	81	3	61	59	7	1	30	1.36
51761058--51761096	18	2.2	18	85	0	51	10	5	12	71	1.28
51775200--51775237	18	2.1	19	90	5	60	52	5	21	21	1.66
51778649--51778863	75	2.9	75	92	0	358	30	19	15	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51786915--51786981	18	3.8	17	92	4	98	8	34	40	16	1.80
51790184--51790562	43	8.9	43	88	1	512	26	33	18	20	1.96
51793999--51794048	3	16.7	3	79	8	57	30	6	2	62	1.31
51794082--51794130	24	2.1	23	82	14	57	38	8	2	51	1.43
51807000--51807499	41	11.7	41	70	14	223	30	20	22	26	1.98
51806937--51807197	124	2.1	124	96	0	477	32	19	21	26	1.97
51806998--51807538	44	12.6	44	70	13	227	30	19	22	26	1.98
51807039--51807450	174	2.4	170	87	5	589	30	20	22	26	1.98
51807124--51807495	87	4.3	87	74	8	321	29	21	22	26	1.99
51807213--51807463	130	1.9	128	79	7	276	28	20	24	26	1.99
51808847--51808893	3	15.7	3	78	8	51	29	6	2	61	1.32
51808927--51808975	24	2.1	23	82	14	57	38	8	2	51	1.43
51812469--51812524	21	2.6	23	75	13	64	37	30	0	32	1.58
51812484--51812514	14	2.2	14	94	0	53	35	29	0	35	1.58
51812784--51812938	7	21.7	7	75	11	91	45	34	0	18	1.55
51813170--51813385	41	5.3	40	81	8	238	31	26	20	21	1.98
51813170--51813386	83	2.7	81	83	8	262	31	26	20	21	1.98
51813422--51813550	40	3.2	40	85	3	163	18	25	24	31	1.97
51813557--51813582	12	2.2	12	100	0	52	46	30	15	7	1.74
51824088--51824113	12	2.2	12	100	0	52	65	19	0	15	1.27
51831340--51831381	19	2.2	19	86	0	57	61	2	4	30	1.29
51832170--51832227	18	3.3	17	76	9	55	20	24	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51836751--51836782	15	2.1	15	100	0	64	12	0	28	59	1.34
51837460--51837999	66	8.3	61	75	17	394	49	12	10	27	1.73
51837478--51838021	63	8.3	63	77	13	421	50	12	9	27	1.71
51837460--51838020	131	4.3	125	80	12	465	49	12	9	27	1.72
51837685--51838020	131	2.6	133	87	6	478	52	12	10	25	1.70
51843949--51843984	16	2.1	18	90	10	58	44	0	2	52	1.15
51844331--51844372	19	2.2	19	83	8	50	38	0	2	59	1.10
51846427--51846483	22	2.5	22	78	18	64	64	5	7	22	1.38
51848216--51848304	42	2.1	42	100	0	178	33	16	15	33	1.91
51848449--51848482	17	2.0	17	88	0	50	38	20	5	35	1.77
51855460--51855507	24	2.0	24	84	8	62	39	8	2	50	1.44
51859071--51859120	23	2.2	23	85	7	66	54	2	0	44	1.11
51864410--51864471	18	3.6	18	77	16	69	58	0	6	35	1.24
51864407--51864471	35	1.9	33	84	12	87	56	0	7	35	1.28
51866197--51866352	43	3.4	43	70	17	134	28	25	17	27	1.98
51866195--51866373	95	1.9	94	94	1	313	29	24	18	27	1.98
51866577--51867068	86	5.7	88	90	3	712	25	23	22	28	1.99
51866577--51867068	174	2.8	175	89	3	735	25	23	22	28	1.99
51867382--51867486	52	2.0	53	98	1	203	30	26	11	31	1.91
51869233--51869262	8	3.6	8	95	4	51	13	0	13	73	1.10
51873978--51874039	18	3.6	18	77	16	69	58	0	6	35	1.24
51873975--51874039	35	1.9	33	84	12	87	56	0	7	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51877007--51877171	83	2.0	83	93	0	285	36	13	9	40	1.77
51878260--51878308	25	2.0	25	83	0	62	42	0	4	53	1.20
51878297--51878332	18	1.9	19	88	5	56	41	2	0	55	1.14
51878799--51878840	20	2.1	20	86	0	57	33	9	2	54	1.46
51891229--51891355	69	1.9	67	88	6	193	42	14	9	33	1.78
51896081--51896119	18	2.1	19	90	9	62	48	17	10	23	1.78
51901528--51901571	21	2.1	21	83	8	54	43	0	9	47	1.35
51903870--51903895	6	4.3	6	100	0	52	84	0	0	15	0.62
51904553--51904646	39	2.4	39	90	1	143	22	17	19	41	1.90
51905161--51905192	15	2.3	15	89	10	50	40	0	18	40	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173