genome.fa.s17.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  145  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43979044--43979072	12	2.3	13	94	5	51	89	0	10	0	0.48
43979209--43980059	87	9.8	87	90	1	1217	30	22	22	24	1.99
43981352--43981384	16	2.0	17	94	5	59	78	0	15	6	0.93
43982159--43982198	20	2.0	20	90	0	62	50	12	10	27	1.72
43982147--43982213	34	1.9	35	87	3	100	46	11	8	32	1.72
43982182--43982221	14	2.9	14	84	0	53	42	17	7	32	1.77
43982689--43982767	3	25.7	3	78	5	77	37	3	1	56	1.25
44000932--44000993	29	2.1	29	82	5	72	56	14	6	22	1.61
44003789--44003817	6	4.8	6	100	0	58	68	0	31	0	0.89
44006137--44006204	34	2.0	34	100	0	136	23	11	8	55	1.63
44007387--44007428	11	3.8	11	87	0	57	21	19	7	52	1.69
44007590--44007643	15	3.4	15	76	14	54	27	1	5	64	1.26
44009720--44009767	25	1.9	25	95	0	87	47	0	12	39	1.41
44009813--44010271	23	20.1	23	76	14	382	48	25	0	25	1.56
44009810--44010270	45	10.1	46	78	11	397	48	25	0	25	1.56
44009810--44010270	91	5.0	91	79	11	482	48	25	0	25	1.56
44009806--44010271	68	6.8	67	78	11	425	48	25	0	25	1.56
44010265--44010624	116	3.1	115	93	1	621	39	9	6	44	1.63
44010383--44010571	61	3.2	61	65	17	171	40	8	7	42	1.66
44012808--44013182	124	3.0	124	92	0	599	32	22	15	29	1.95
44018021--44018057	16	2.1	19	85	14	53	75	8	13	2	1.13
44018940--44019231	44	6.5	44	83	6	352	30	22	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44018943--44019227	89	3.2	88	82	6	345	30	22	15	31	1.94
44019363--44020029	50	13.4	50	69	5	416	25	23	20	30	1.99
44019379--44020045	100	6.7	100	92	1	1020	25	23	21	29	1.99
44024149--44024194	19	2.4	19	85	7	58	47	8	19	23	1.77
44024638--44024673	17	2.1	17	89	0	54	47	19	13	19	1.83
44030355--44030441	44	2.0	44	82	8	106	25	24	17	33	1.96
44030634--44030814	44	4.1	44	66	8	116	28	21	19	30	1.98
44030544--44031417	132	6.6	132	86	2	1038	28	23	19	28	1.98
44032351--44032375	13	1.9	13	100	0	50	56	4	24	16	1.57
44032739--44032780	22	2.0	22	85	4	59	14	14	0	71	1.15
44032741--44032782	14	2.9	15	82	7	50	14	14	0	71	1.15
44035645--44035684	19	2.0	20	85	4	55	47	7	20	25	1.75
44035717--44035742	13	2.0	13	100	0	52	46	15	7	30	1.74
44036129--44036180	16	3.2	16	89	5	77	42	21	17	19	1.89
44036129--44036180	17	3.1	17	91	2	79	42	21	17	19	1.89
44036565--44036591	6	4.5	6	100	0	54	55	14	14	14	1.70
44037994--44038041	3	16.0	3	82	8	62	60	2	4	33	1.27
44041805--44041840	12	2.9	13	88	12	58	69	0	0	30	0.89
44050675--44050708	6	5.7	6	100	0	68	14	50	0	35	1.44
44058279--44058311	3	11.0	3	100	0	66	33	0	0	66	0.92
44059147--44059171	3	8.3	3	100	0	50	0	0	32	68	0.90
44068146--44068170	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44078898--44078930	10	3.4	10	95	4	59	66	0	24	9	1.20
44079047--44079224	51	3.5	51	74	8	148	24	14	28	33	1.94
44079040--44079224	101	1.8	102	88	3	284	24	14	27	33	1.94
44079228--44079322	45	2.1	45	94	3	165	28	18	23	29	1.98
44082433--44082457	3	8.3	3	100	0	50	64	0	36	0	0.94
44083514--44083552	20	2.0	20	89	0	60	53	7	0	38	1.30
44085105--44085136	15	2.1	15	94	0	55	71	6	6	15	1.26
44088065--44088116	22	2.3	23	93	3	88	42	0	21	36	1.53
44088688--44088759	27	2.6	27	84	8	92	34	6	5	52	1.52
44089895--44089947	21	2.7	21	80	11	67	26	20	20	32	1.98
44089897--44089948	18	2.7	19	82	8	61	26	21	19	32	1.97
44090446--44090492	24	1.9	25	82	4	60	57	2	2	38	1.23
44094399--44094433	17	1.9	19	88	11	56	20	2	11	65	1.37
44094758--44094992	120	2.0	120	83	0	299	31	21	16	30	1.95
44105074--44105178	50	2.1	50	96	0	192	54	5	1	38	1.35
44105297--44105373	28	2.8	28	78	3	77	57	1	12	28	1.44
44105445--44105479	18	1.9	18	94	0	61	25	11	34	28	1.91
44105741--44105767	14	1.9	14	100	0	54	22	0	11	66	1.22
44119812--44119879	30	2.2	31	86	2	93	27	11	14	45	1.80
44119900--44120008	45	2.4	45	81	3	139	26	19	12	41	1.87
44124925--44124960	18	2.0	18	88	0	54	55	2	0	41	1.14
44125606--44125658	25	2.3	23	78	12	63	35	0	11	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44126235--44126269	18	2.0	17	94	5	61	57	0	0	42	0.99
44127154--44127598	43	10.4	43	78	6	361	23	25	20	30	1.98
44127679--44127708	14	2.1	14	100	0	60	53	33	0	13	1.40
44127917--44127972	21	2.7	21	77	0	58	8	42	14	33	1.77
44128027--44128070	21	2.1	21	86	0	61	2	40	20	36	1.65
44127959--44128138	87	2.1	87	86	4	247	12	30	17	40	1.86
44134157--44134212	27	2.1	27	100	0	94	50	3	3	42	1.37
44134628--44134668	19	2.1	20	86	4	57	63	4	2	29	1.28
44134651--44134689	19	2.0	20	90	5	62	58	5	0	35	1.20
44134591--44134699	8	12.9	8	68	24	55	61	2	2	33	1.24
44135495--44135525	16	1.9	16	93	0	53	32	6	25	35	1.82
44137043--44137087	23	2.0	23	82	8	56	40	31	6	22	1.80
44138200--44138546	113	3.1	113	89	0	514	27	22	23	27	1.99
44140411--44140528	43	2.7	44	76	13	120	21	14	27	37	1.92
44149772--44149809	14	2.7	14	92	8	60	36	2	18	42	1.64
44149801--44149838	19	2.0	19	100	0	76	26	10	15	47	1.78
44149914--44149956	18	2.4	18	92	0	68	44	2	2	51	1.27
44149919--44149961	18	2.6	16	79	13	50	46	0	2	51	1.13
44151123--44151183	32	1.9	32	93	0	104	49	18	4	27	1.68
44151156--44151210	27	2.0	27	86	6	76	49	18	5	27	1.69
44154185--44154219	16	2.2	16	94	0	61	45	40	0	14	1.45
44155260--44155314	28	2.0	28	88	0	83	47	5	3	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44166333--44166371	19	2.0	20	90	5	62	58	2	0	38	1.12
44166322--44166405	28	2.9	29	77	8	84	55	1	2	40	1.20
44175064--44175118	25	2.2	25	80	3	67	60	5	0	34	1.20
44175217--44175259	22	2.0	22	90	0	68	60	16	16	6	1.56
44178739--44178774	18	1.9	19	88	5	56	38	2	5	52	1.39
44181172--44181211	5	7.8	5	83	5	53	35	0	22	42	1.54
44189373--44189433	32	1.9	32	90	3	97	19	19	6	54	1.66
44194176--44194210	2	17.5	2	93	0	61	0	51	0	48	1.00
44208850--44208912	30	2.1	30	96	0	117	31	6	38	23	1.80
44213299--44213522	106	2.1	106	97	1	423	38	16	11	33	1.85
44214294--44214345	6	8.3	6	80	16	52	75	0	3	21	0.97
44214299--44214360	25	2.5	26	82	17	78	70	0	4	24	1.06
44223424--44223470	24	2.0	24	84	16	62	51	17	0	31	1.46
44224190--44224279	7	12.7	7	83	13	105	55	1	1	42	1.14
44236689--44236851	43	3.8	45	77	8	151	32	22	14	30	1.93
44236689--44236851	87	1.9	87	85	10	226	32	22	14	30	1.93
44236668--44236870	87	2.3	87	76	18	224	31	23	15	30	1.95
44238967--44239004	15	2.5	16	83	12	53	60	5	0	34	1.19
44240379--44240908	126	4.2	125	85	2	715	30	17	22	29	1.96
44244073--44244824	21	34.0	22	69	15	351	24	0	27	46	1.56
44244090--44244824	43	16.6	43	70	17	300	24	0	27	47	1.55
44244242--44244553	15	21.3	15	64	19	63	22	0	30	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44244141--44244377	88	2.7	85	76	12	230	26	0	24	48	1.54
44244338--44244402	29	2.2	29	78	5	69	23	0	30	46	1.53
44244365--44244560	7	26.9	7	69	13	110	20	0	34	45	1.51
44244411--44244551	59	2.4	58	92	2	228	19	0	34	45	1.51
44244505--44244552	16	3.1	16	87	3	62	16	0	33	50	1.46
44244609--44244824	64	3.4	63	79	11	233	26	0	27	46	1.53
44244608--44244824	87	2.5	86	84	3	276	26	0	27	46	1.53
44244792--44244858	34	2.0	33	91	2	107	20	0	38	40	1.53
44245403--44245444	18	2.3	18	83	0	57	47	7	28	16	1.73
44246198--44246235	20	1.9	20	89	10	60	57	5	2	34	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173