genome.fa.s17.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  103  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31821244--31821283	20	2.0	20	90	0	62	50	12	10	27	1.72
31821232--31821298	34	1.9	35	90	3	109	46	13	8	31	1.74
31822746--31822786	21	2.0	21	85	9	57	14	29	9	46	1.77
31827297--31827351	5	11.4	5	75	5	51	65	0	34	0	0.93
31827351--31827453	3	35.3	3	70	14	65	70	0	28	0	0.93
31827328--31827487	50	3.3	50	88	4	211	68	0	30	0	0.94
31827322--31827454	6	21.2	6	71	17	65	70	0	28	0	0.92
31827359--31827485	23	5.5	22	75	21	91	70	0	29	0	0.93
31827385--31827507	33	3.4	35	71	17	101	68	0	31	0	0.90
31827335--31827516	33	5.5	33	70	17	94	69	0	30	0	0.93
31828200--31828246	8	5.8	8	78	14	51	61	0	0	38	0.96
31827846--31828621	319	2.4	319	95	1	1360	51	8	10	28	1.67
31833726--31833766	3	13.7	3	100	0	82	68	31	0	0	0.90
31833765--31833789	3	8.3	3	100	0	50	68	0	0	32	0.90
31834032--31834121	27	3.3	27	80	11	112	22	31	24	22	1.99
31837094--31837475	46	8.3	45	83	11	399	28	22	14	34	1.93
31837185--31837303	36	3.0	36	75	21	130	29	21	13	36	1.91
31837139--31837303	82	2.0	82	95	0	294	29	21	13	35	1.92
31837267--31837495	52	4.5	52	87	7	335	27	23	14	34	1.93
31837221--31837495	98	2.8	98	85	9	373	28	22	14	34	1.93
31850537--31850635	42	2.4	42	93	3	164	24	26	29	20	1.99
31851440--31851548	38	2.8	39	84	1	148	37	8	10	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31851440--31851559	39	3.1	38	77	5	125	36	8	10	45	1.68
31857524--31857572	20	2.7	18	77	22	57	51	4	2	42	1.32
31859225--31859256	15	2.1	15	94	0	55	68	9	6	15	1.36
31860203--31860607	206	2.0	206	90	0	648	34	13	20	31	1.91
31877343--31877455	30	3.8	30	81	10	142	37	14	20	28	1.91
31877347--31877470	30	4.1	29	80	8	124	37	13	19	29	1.90
31877347--31877470	60	2.1	59	83	6	151	37	13	19	29	1.90
31877583--31877628	22	2.0	22	87	4	65	36	21	23	17	1.94
31879592--31879620	15	1.9	15	100	0	58	48	0	31	20	1.50
31893886--31893959	19	3.9	19	80	3	78	27	20	27	25	1.99
31895468--31895534	9	7.6	9	74	15	59	61	0	1	37	1.05
31895550--31895602	10	5.4	10	75	4	54	69	0	7	22	1.13
31895610--31895646	19	1.9	19	94	0	65	59	5	5	29	1.42
31895635--31895676	21	2.0	21	85	0	57	57	2	4	35	1.33
31896069--31896106	19	2.0	20	84	5	51	28	2	5	63	1.30
31904650--31904707	11	5.2	11	76	17	57	31	1	3	63	1.21
31905389--31905461	22	3.3	22	80	0	65	13	27	17	41	1.88
31908273--31908367	25	3.8	25	71	15	79	30	25	20	24	1.98
31914575--31914759	96	1.9	96	91	0	298	34	16	14	35	1.89
31928060--31928207	43	3.4	43	78	5	138	31	26	16	25	1.97
31929288--31929314	13	2.1	13	100	0	54	48	22	0	29	1.51
31930402--31930444	21	2.0	21	86	8	61	39	4	0	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31933844--31933984	41	3.3	41	79	9	151	53	0	10	35	1.41
31937596--31937632	19	2.0	19	89	5	58	62	13	2	21	1.44
31941849--31941875	13	2.1	13	100	0	54	48	22	0	29	1.51
31958517--31958592	26	3.0	25	86	5	107	34	21	9	35	1.85
31963108--31963181	29	2.6	28	77	14	71	25	22	18	32	1.97
31963354--31963463	53	2.1	54	84	5	143	29	23	10	36	1.89
31968357--31968407	15	3.5	15	69	15	52	49	3	13	33	1.61
31971459--31971554	47	2.0	49	84	11	128	28	12	25	34	1.92
31974800--31974850	26	2.0	26	92	0	84	17	25	33	23	1.96
31974865--31975063	43	4.7	44	73	13	159	23	18	23	34	1.96
31974866--31975062	85	2.3	84	87	5	281	23	18	23	34	1.96
31976932--31977754	153	5.4	153	88	4	1133	53	7	8	30	1.59
31982741--31982785	24	1.9	23	81	4	54	60	2	4	33	1.29
31982940--31982982	18	2.4	18	100	0	86	30	16	20	32	1.95
31986771--31986812	11	3.6	11	81	12	57	59	4	0	35	1.19
31990345--31990378	17	2.0	17	88	11	52	44	2	23	29	1.68
31995238--31995424	61	3.1	61	68	11	186	43	2	4	49	1.35
31995285--31995319	18	2.0	17	88	5	52	45	0	0	54	0.99
31995190--31995505	120	2.6	120	96	0	569	43	2	4	49	1.34
31995275--31995454	54	3.1	54	68	20	164	44	1	3	50	1.30
31995297--31995482	57	3.1	61	66	22	174	44	2	3	49	1.34
31995429--31995541	26	4.2	26	63	23	63	44	1	3	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31995668--31995773	44	2.5	41	77	18	126	35	30	3	30	1.75
31995685--31995773	44	2.0	46	91	4	146	37	30	4	28	1.77
31996711--31996762	3	17.3	3	100	0	104	34	0	0	65	0.93
31998297--31998339	14	3.0	14	76	6	50	62	0	0	37	0.95
31998315--31998353	21	1.9	20	89	5	60	71	0	2	25	0.98
32007316--32007350	6	5.8	6	100	0	70	34	14	0	51	1.42
32007655--32007707	21	2.5	21	90	0	79	35	7	28	28	1.84
32008246--32008304	11	5.5	10	84	11	73	22	28	0	49	1.50
32009483--32009507	7	3.6	7	100	0	50	28	0	16	56	1.41
32009476--32009507	14	2.3	15	84	15	50	28	0	15	56	1.40
32010016--32010099	30	2.8	29	77	12	89	40	42	8	8	1.65
32010149--32010191	18	2.4	18	92	0	68	16	27	9	46	1.77
32010447--32010490	21	2.1	21	86	0	61	27	40	22	9	1.84
32014211--32014248	19	2.0	19	94	0	67	50	15	2	31	1.58
32015482--32015529	19	2.6	19	83	3	62	22	22	22	31	1.99
32017177--32017213	13	2.8	13	83	0	56	62	8	13	16	1.54
32025215--32025257	21	2.1	20	86	4	59	20	23	23	32	1.98
32036258--32036350	46	2.0	46	85	0	123	35	12	15	36	1.85
32037472--32037648	45	3.9	45	89	2	160	20	21	14	43	1.87
32037495--32037682	45	4.2	45	86	4	218	22	21	13	42	1.87
32038160--32038201	22	1.9	22	85	9	59	59	2	4	33	1.31
32039003--32039123	13	9.3	13	75	3	91	42	0	16	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32052018--32052047	15	2.0	15	93	0	51	40	16	23	20	1.91
32058746--32058821	38	2.0	38	100	0	152	18	18	7	55	1.66
32069705--32069757	27	2.0	27	84	0	70	41	9	9	39	1.70
32077485--32077572	45	2.0	45	97	0	167	50	4	25	20	1.67
32089569--32089650	42	2.0	42	87	4	121	46	3	23	26	1.69
32091533--32091567	18	1.9	19	88	11	56	14	28	5	51	1.65
32094287--32094326	16	2.5	16	91	0	62	37	7	25	30	1.83
32094308--32094400	44	2.1	44	90	6	143	33	4	26	35	1.76
32094494--32094568	33	2.2	32	81	6	87	52	2	0	45	1.15
32094850--32094908	23	2.6	21	80	15	73	47	15	1	35	1.55
32100587--32100705	23	5.2	23	82	0	148	22	20	25	31	1.98
32100587--32100701	46	2.5	46	89	0	176	21	20	26	32	1.98
32101056--32101101	24	1.9	24	86	0	65	52	2	0	45	1.13
32103174--32103204	16	1.9	16	93	0	53	74	9	6	9	1.23
32104772--32104824	27	1.9	28	84	3	72	28	0	1	69	0.99
32110764--32110797	18	2.0	18	88	11	54	17	41	29	11	1.85
32113028--32113209	50	3.7	50	83	1	213	26	24	28	21	1.99
32119568--32119625	30	1.9	30	85	0	80	37	5	24	32	1.77
32119976--32120198	50	4.3	50	81	4	223	27	22	26	23	2.00
32130821--32130850	15	1.9	16	93	6	53	33	0	0	66	0.92
32131118--32131155	3	12.7	3	88	0	58	34	28	0	36	1.58
32143487--32143511	12	2.1	12	100	0	50	40	36	16	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32147256--32147449	50	3.9	50	80	2	194	29	21	26	21	1.99
32155182--32155223	8	5.1	8	85	5	57	14	30	2	52	1.54
32165222--32165250	15	1.9	15	100	0	58	31	13	27	27	1.94
32168068--32168164	49	2.0	49	89	0	149	43	9	17	29	1.80
32174604--32174652	10	4.5	11	74	20	50	63	0	4	32	1.13
32174870--32174902	12	2.6	13	85	9	50	57	0	0	42	0.98
32177193--32177244	14	3.9	14	75	14	65	38	0	1	59	1.08
32178129--32178185	30	1.9	30	88	0	87	38	5	10	45	1.61
32178917--32178958	22	1.9	22	85	9	59	76	7	14	2	1.10
32192755--32192802	22	2.2	22	88	0	69	47	14	16	20	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173