genome.fa.s17.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  121  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37220778--37220989	100	2.1	100	83	0	253	24	17	25	32	1.97
37220776--37220970	50	3.9	50	74	2	149	24	18	24	32	1.97
37220846--37220989	50	2.9	49	74	10	139	23	19	24	32	1.97
37221086--37221209	44	2.8	44	86	0	158	26	22	20	30	1.98
37221206--37221246	19	2.2	19	100	0	82	21	14	14	48	1.80
37221225--37221573	175	2.0	175	95	0	626	28	21	18	32	1.96
37221330--37221725	44	9.0	44	69	11	202	27	21	18	32	1.97
37221281--37221665	88	4.4	88	75	9	390	28	21	17	32	1.96
37221716--37221952	129	1.8	129	89	0	375	23	24	18	34	1.96
37224200--37224323	56	2.2	55	84	5	158	12	9	6	71	1.29
37224278--37224317	6	6.7	6	94	0	62	17	0	10	72	1.11
37224228--37224324	50	1.9	50	85	0	131	13	6	9	71	1.30
37224247--37224324	18	4.2	18	73	11	68	12	3	10	73	1.23
37224222--37224317	12	7.8	12	75	4	66	14	7	8	69	1.34
37232813--37233007	44	4.6	42	67	6	106	29	21	20	28	1.98
37232814--37233051	129	1.8	130	91	2	399	28	21	19	30	1.97
37233039--37234104	127	8.3	128	93	1	1726	25	23	19	31	1.98
37233049--37234104	256	4.1	256	92	1	1740	25	23	19	31	1.98
37235090--37235139	8	6.6	8	76	19	54	14	10	0	76	1.03
37235088--37235122	13	2.6	13	90	4	52	14	8	0	77	0.99
37235112--37235144	17	1.9	17	93	0	57	15	15	0	69	1.19
37244100--37244219	59	2.0	59	100	0	240	25	20	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37248035--37248088	28	1.9	28	88	7	83	64	0	1	33	1.04
37255758--37255840	29	2.9	28	76	3	85	32	8	13	45	1.73
37260409--37260554	34	4.3	34	78	3	150	31	13	13	41	1.83
37260661--37260856	45	4.4	44	80	1	185	25	18	20	35	1.95
37261925--37261992	31	2.2	32	78	7	77	35	14	7	42	1.74
37268191--37268411	96	2.3	96	83	3	266	40	2	17	40	1.62
37272306--37272348	18	2.4	18	88	0	59	44	9	27	18	1.80
37274156--37274237	11	7.5	10	78	16	83	47	1	29	21	1.59
37274163--37274237	22	3.4	22	87	5	107	46	0	30	22	1.52
37274156--37274237	33	2.5	33	84	11	114	47	1	29	21	1.59
37279629--37279669	3	13.7	3	100	0	82	68	0	0	31	0.90
37280666--37280725	28	2.2	27	82	8	68	25	6	1	66	1.25
37290638--37290686	25	2.0	25	87	0	71	34	18	10	36	1.85
37291461--37291782	97	3.3	97	84	3	400	42	2	18	36	1.63
37291820--37291906	33	2.6	33	70	10	79	59	0	2	37	1.10
37292334--37292359	11	2.4	11	100	0	52	57	0	0	42	0.98
37292338--37292378	18	2.4	17	87	4	55	51	0	0	48	1.00
37292517--37292616	39	2.5	39	80	6	121	23	26	24	27	2.00
37305352--37305447	47	2.0	47	93	0	165	41	5	5	47	1.48
37308629--37308736	43	2.5	43	87	1	162	32	25	14	27	1.95
37308851--37308933	31	2.7	30	76	7	87	44	16	8	30	1.78
37308851--37308944	31	3.1	30	70	10	82	46	17	7	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37311285--37311664	190	2.0	190	95	0	688	32	15	15	37	1.88
37312594--37312638	12	3.9	12	80	11	58	46	0	4	48	1.22
37312594--37312646	22	2.4	22	96	0	97	45	1	3	49	1.31
37312892--37312943	16	3.2	16	78	5	61	32	23	1	42	1.65
37314097--37314204	14	7.7	14	73	0	81	36	21	17	25	1.95
37314242--37314296	27	2.0	26	86	6	74	20	32	23	23	1.98
37314246--37314305	28	2.2	27	90	3	93	23	31	21	23	1.98
37314315--37314424	34	3.3	34	79	6	116	30	19	24	26	1.98
37314312--37314458	34	4.5	33	74	10	115	29	19	23	27	1.98
37314364--37314439	33	2.5	31	80	8	84	28	22	26	22	1.99
37314364--37314453	29	2.9	28	76	18	74	28	22	25	23	1.99
37315643--37315689	21	2.2	21	92	0	76	44	4	12	38	1.62
37320001--37320136	69	2.0	69	89	0	209	29	25	15	30	1.96
37319998--37320155	69	2.3	69	84	0	208	27	25	17	29	1.97
37328202--37328271	30	2.3	30	78	9	72	52	4	2	40	1.36
37330103--37330325	111	2.0	111	95	0	403	31	12	4	52	1.58
37332518--37332553	18	2.0	18	88	0	54	22	36	19	22	1.95
37337618--37337642	5	5.0	5	100	0	50	80	0	0	20	0.72
37338634--37338671	20	1.9	20	88	0	58	18	28	13	39	1.88
37338705--37338755	20	2.5	20	81	9	59	7	29	25	37	1.84
37341548--37341611	32	2.0	32	90	0	101	20	17	20	42	1.90
37344876--37344930	29	2.0	27	82	7	65	58	1	9	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37346116--37346150	18	1.9	18	88	0	52	20	22	28	28	1.98
37346667--37346757	44	2.0	45	81	6	105	31	26	12	29	1.92
37346726--37347694	44	22.3	43	72	12	627	30	25	15	28	1.96
37346878--37347695	133	6.2	133	90	2	1294	30	25	15	28	1.96
37358241--37358286	23	2.0	23	100	0	92	21	34	13	30	1.91
37359059--37359094	3	12.0	3	88	11	56	69	0	0	30	0.89
37359542--37359630	19	4.3	20	84	11	92	43	13	5	37	1.68
37359563--37359637	19	3.8	19	87	6	114	41	16	6	36	1.74
37375567--37375679	24	4.8	24	72	3	77	29	43	13	14	1.83
37375567--37375623	12	4.8	12	84	0	69	26	45	14	14	1.82
37375568--37375679	35	3.2	36	79	6	113	29	43	13	13	1.82
37377273--37377360	26	3.6	25	77	10	76	18	22	19	39	1.92
37380384--37380435	17	2.9	17	75	13	52	65	3	0	30	1.10
37383568--37383601	16	2.1	17	88	5	52	47	0	11	41	1.40
37390549--37390576	14	2.0	14	100	0	56	50	14	21	14	1.78
37391498--37391634	69	2.0	69	86	0	193	32	22	25	18	1.97
37394130--37394245	42	2.7	43	77	4	119	30	26	19	23	1.98
37399137--37399194	18	2.8	20	80	15	57	43	1	1	53	1.21
37403214--37403269	27	2.2	25	80	6	58	28	8	10	51	1.66
37403234--37403288	26	2.2	25	83	3	65	27	5	14	52	1.63
37414862--37414912	25	2.0	25	92	0	84	39	9	0	50	1.35
37424061--37424092	10	3.1	11	82	17	50	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37424019--37424087	29	2.3	30	78	9	79	49	1	1	47	1.19
37424016--37424131	50	2.3	49	81	8	137	46	0	1	50	1.17
37425106--37425144	20	2.0	19	85	5	51	48	5	5	41	1.47
37426392--37426434	20	2.0	21	86	8	61	44	2	2	51	1.27
37431944--37431983	21	1.9	21	84	0	53	32	27	7	32	1.85
37433274--37433323	20	2.5	19	81	12	55	52	2	0	46	1.12
37433287--37433330	20	2.2	20	84	4	54	50	4	2	43	1.35
37436699--37436798	43	2.3	43	92	0	164	34	32	17	17	1.92
37439999--37440051	9	5.4	9	76	12	52	43	3	0	52	1.19
37440381--37440434	21	2.8	18	83	10	63	51	18	16	12	1.75
37440580--37440719	7	19.6	7	72	12	63	47	32	0	20	1.51
37440952--37441450	41	12.2	41	86	1	678	28	30	18	22	1.97
37453636--37453687	20	2.6	20	81	6	61	51	9	3	34	1.53
37456160--37456219	28	2.2	28	81	3	68	26	15	6	51	1.67
37456054--37456235	29	6.3	29	73	8	104	21	15	10	51	1.74
37456171--37456235	28	2.3	28	86	0	85	24	15	9	50	1.73
37457186--37457275	37	2.4	36	81	7	101	28	6	20	44	1.76
37458263--37458324	20	3.1	20	85	0	79	48	8	8	35	1.62
37458263--37458350	40	2.2	40	82	8	99	47	10	9	32	1.69
37459552--37459601	25	2.0	25	84	7	66	28	12	34	26	1.92
37465314--37465353	18	2.0	21	86	13	59	62	0	2	35	1.09
37468561--37468745	101	1.8	102	90	3	302	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37468561--37468745	51	3.6	51	81	5	205	24	17	27	30	1.97
37471474--37471585	50	2.3	50	96	1	208	47	24	6	22	1.74
37471919--37471948	15	2.1	14	93	6	51	36	23	6	33	1.81
37472175--37472251	20	3.8	20	78	3	82	38	23	25	11	1.89
37473184--37473242	21	2.8	20	80	14	57	55	3	0	40	1.16
37473215--37473348	41	3.3	39	88	6	205	64	0	1	34	1.03
37473225--37473330	11	10.4	11	73	20	79	61	0	1	36	1.07
37473314--37473360	17	2.8	17	83	0	58	61	0	0	38	0.96
37475276--37475308	12	2.7	13	86	13	52	39	9	3	48	1.50
37475536--37475591	29	1.9	29	92	0	94	46	12	7	33	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173