genome.fa.s17.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  133  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40506294--40506327	17	1.9	18	88	5	52	73	2	2	20	1.09
40516993--40517030	16	2.3	16	82	17	51	60	15	13	10	1.59
40517191--40517266	31	2.5	31	91	0	125	42	18	13	26	1.87
40517432--40517521	33	2.8	31	72	8	81	44	11	7	36	1.69
40528053--40528090	19	2.0	19	85	10	51	31	21	7	39	1.82
40534418--40534582	52	3.2	52	83	11	225	36	13	22	27	1.92
40534478--40534693	37	5.3	44	86	9	190	37	14	22	26	1.92
40534546--40534691	37	4.0	37	91	1	233	36	15	22	24	1.93
40535946--40536138	49	3.9	49	95	0	323	23	15	30	31	1.95
40539264--40539428	52	3.2	52	83	11	225	36	13	22	27	1.92
40539324--40539539	37	5.3	44	86	9	190	37	14	22	26	1.92
40539392--40539537	37	4.0	37	91	1	233	36	15	22	24	1.93
40544635--40544952	44	7.2	44	88	3	444	29	20	24	25	1.99
40548986--40549102	41	2.9	41	86	5	159	29	15	17	36	1.91
40553035--40553142	41	2.7	41	84	2	130	26	17	21	34	1.96
40555779--40555862	4	21.0	4	71	20	61	5	22	1	70	1.16
40555771--40555828	22	2.5	23	81	13	66	0	29	0	70	0.87
40557504--40557617	42	2.7	42	84	0	138	35	19	20	24	1.95
40557601--40557917	42	7.5	42	82	3	316	26	18	20	33	1.96
40557598--40557923	126	2.6	127	82	4	372	26	19	20	34	1.96
40557551--40557933	84	4.5	85	79	6	296	27	19	20	31	1.97
40558309--40558348	21	1.9	21	84	0	53	5	45	15	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40560069--40560162	44	2.1	44	94	0	161	34	8	35	22	1.84
40561333--40561396	7	9.0	7	84	3	83	43	40	0	15	1.47
40561871--40562196	114	3.0	107	74	15	312	26	23	18	30	1.98
40562257--40562364	55	2.0	55	83	0	135	25	17	17	39	1.91
40563536--40563673	40	3.5	39	77	7	136	34	21	17	26	1.95
40563564--40563676	38	2.8	40	81	6	149	35	22	18	23	1.96
40564505--40564584	4	20.0	4	74	21	62	2	22	2	72	1.09
40564505--40564576	30	2.4	29	81	6	81	1	23	2	72	1.06
40566766--40566806	22	1.9	22	85	5	57	24	34	17	24	1.96
40569718--40569870	47	3.3	47	90	0	243	49	20	10	20	1.78
40571429--40571453	13	1.9	13	100	0	50	56	4	0	40	1.18
40575002--40575052	26	2.0	26	96	0	93	19	21	29	29	1.98
40574899--40575126	102	2.2	102	93	0	384	19	21	26	32	1.97
40575025--40575239	76	2.8	77	85	6	285	23	19	26	30	1.98
40577675--40577718	22	1.9	24	90	9	74	25	20	0	54	1.45
40578085--40578115	15	2.1	15	100	0	62	0	6	12	80	0.89
40578297--40578354	17	3.4	16	78	19	64	56	0	0	43	0.99
40578294--40578354	5	12.6	5	71	25	51	57	0	0	42	0.98
40581054--40581151	46	2.1	46	98	0	187	34	9	18	37	1.83
40581748--40581864	62	1.9	59	86	5	162	41	4	3	50	1.38
40590965--40591005	17	2.5	16	88	4	55	68	4	2	24	1.22
40591064--40591233	90	1.9	90	86	1	234	28	14	18	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40593469--40593599	42	3.1	41	82	6	149	16	21	16	45	1.85
40593503--40593614	21	5.5	21	74	4	95	14	23	18	43	1.86
40600363--40600511	21	7.1	21	67	10	63	16	24	16	43	1.87
40600357--40600511	84	1.8	84	81	2	195	16	24	15	43	1.86
40600357--40600513	42	3.7	42	79	3	154	16	24	15	43	1.87
40602901--40603048	47	3.1	47	92	0	242	54	0	8	37	1.30
40602883--40603057	94	1.9	94	86	4	246	53	0	8	38	1.30
40603044--40603090	21	2.1	21	84	7	58	57	2	0	40	1.11
40603172--40603234	24	2.6	23	90	7	90	55	3	4	36	1.37
40605251--40605292	23	1.9	22	85	9	59	52	4	4	38	1.44
40606226--40606287	30	2.1	30	90	0	97	25	4	11	58	1.53
40610382--40610484	37	2.9	34	84	11	111	60	4	8	26	1.47
40611828--40611870	22	1.9	23	85	4	61	39	2	11	46	1.53
40620188--40620227	12	3.3	12	86	10	55	62	0	2	35	1.09
40620188--40620238	20	2.5	20	81	12	59	62	0	1	35	1.06
40620220--40620283	26	2.5	26	84	0	74	64	0	3	32	1.10
40620203--40620301	22	4.6	23	73	14	79	62	0	4	33	1.14
40620225--40620316	17	5.2	17	69	19	55	63	0	3	33	1.11
40625029--40625053	13	1.9	13	100	0	50	28	8	0	64	1.22
40631582--40631660	12	6.6	12	71	17	58	20	1	3	74	1.04
40631759--40631813	6	9.5	6	80	3	51	1	18	5	74	1.10
40631759--40631813	12	4.8	12	86	4	78	1	18	5	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40632812--40632859	21	2.3	21	92	3	80	35	12	4	47	1.60
40635197--40635301	51	2.1	51	87	0	147	59	5	3	31	1.39
40635226--40635371	70	2.1	70	85	2	195	58	4	4	32	1.38
40635294--40635328	15	2.4	15	85	4	54	68	0	0	31	0.90
40635336--40635413	19	4.1	19	83	3	93	58	1	1	38	1.14
40635354--40635434	19	4.2	20	79	9	96	62	0	0	37	0.95
40635336--40635490	39	4.2	39	71	18	141	57	1	3	36	1.28
40635261--40635490	109	2.1	109	94	0	397	57	2	4	35	1.32
40635402--40635437	15	2.5	15	86	4	56	66	0	0	33	0.92
40635402--40635435	14	2.3	15	90	5	52	64	0	0	35	0.94
40635526--40635559	17	2.0	17	88	0	50	50	2	14	32	1.58
40636421--40636455	12	2.6	14	91	8	56	25	2	2	68	1.17
40636944--40636989	24	2.0	23	91	4	74	69	0	17	13	1.19
40646379--40646430	27	1.9	27	96	0	95	40	17	23	19	1.91
40655426--40655457	16	2.0	16	93	0	55	50	3	6	40	1.43
40664939--40664980	18	2.3	18	80	8	50	30	0	4	64	1.14
40681644--40681673	15	2.1	15	93	6	53	50	23	0	26	1.50
40682168--40682265	47	2.1	47	96	0	178	35	4	33	26	1.76
40682565--40682595	16	1.9	16	93	0	53	38	3	6	51	1.44
40682670--40682717	25	1.9	25	100	0	96	47	8	4	39	1.53
40685938--40686071	13	10.2	13	76	10	103	52	4	3	38	1.39
40685906--40686005	27	3.7	27	80	5	105	54	5	4	37	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40685938--40686033	40	2.4	40	87	3	131	54	4	4	37	1.39
40686287--40686311	7	3.6	7	100	0	50	60	12	0	28	1.32
40687734--40687813	38	2.1	39	95	2	144	56	23	5	15	1.59
40687772--40687839	30	2.3	30	87	5	102	58	23	4	13	1.53
40697713--40697747	17	2.1	18	89	10	56	48	5	17	28	1.69
40709528--40709561	12	2.9	12	86	4	52	32	0	0	67	0.91
40722535--40722624	37	2.4	37	82	12	103	41	3	3	52	1.34
40724531--40724630	40	2.4	41	93	3	166	28	23	20	29	1.98
40727689--40727735	21	2.2	22	85	11	71	21	21	34	23	1.97
40727698--40727743	21	2.2	21	88	0	65	21	19	32	26	1.97
40731487--40731679	50	3.8	50	88	0	278	22	31	20	25	1.98
40732017--40732074	30	1.9	30	82	6	73	29	20	10	39	1.86
40736184--40736216	15	2.1	16	88	5	50	30	6	0	63	1.18
40738818--40739043	43	5.3	42	78	3	184	32	30	14	22	1.93
40745819--40745860	16	2.5	17	92	7	68	45	0	0	54	0.99
40745997--40746045	14	3.5	14	81	8	55	32	48	0	18	1.48
40745984--40746023	21	1.9	21	89	0	62	32	47	0	20	1.50
40746005--40746048	14	3.1	15	87	6	65	36	45	0	18	1.49
40746059--40746147	7	12.6	7	75	2	70	47	28	1	23	1.59
40746056--40746147	21	4.3	21	77	1	85	45	29	1	23	1.60
40746122--40746172	22	2.3	23	77	16	63	45	25	1	27	1.64
40746527--40746762	41	5.8	41	90	1	323	35	31	18	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40748346--40748422	14	5.0	15	71	20	52	42	14	9	33	1.77
40748362--40748401	20	2.0	20	90	0	62	50	12	10	27	1.72
40748350--40748416	34	1.9	35	90	3	109	46	13	8	31	1.74
40755246--40755294	23	2.1	23	92	7	82	30	16	12	40	1.85
40756016--40756069	11	4.8	12	80	15	62	24	31	1	42	1.65
40756016--40756104	11	8.4	11	67	19	55	23	30	2	43	1.66
40756029--40756128	51	2.0	51	90	4	157	25	27	2	46	1.64
40756031--40756139	51	2.1	51	85	6	141	28	23	1	45	1.63
40756126--40756161	15	2.4	15	90	9	56	41	0	0	58	0.98
40758545--40758596	22	2.4	22	87	3	70	44	28	1	25	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173