genome.fa.s17.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  135  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41022267--41022330	18	3.4	18	70	17	58	29	3	14	53	1.56
41022253--41022318	22	3.2	22	70	16	77	30	6	15	48	1.69
41022359--41022413	17	3.0	18	70	15	58	34	1	16	47	1.57
41022307--41022404	17	5.4	17	66	17	54	32	4	15	47	1.64
41022262--41022413	37	4.0	37	88	5	207	32	4	15	46	1.67
41022419--41022492	9	7.8	9	79	11	76	22	6	28	41	1.79
41022414--41022492	20	4.1	19	79	14	90	22	7	27	41	1.81
41022411--41022493	29	2.9	29	94	0	139	24	7	26	42	1.80
41024101--41024137	16	2.3	16	86	13	58	40	0	0	59	0.97
41024096--41024177	13	5.5	14	70	21	51	53	0	0	46	1.00
41024274--41024298	9	2.8	9	100	0	50	44	0	8	48	1.32
41024960--41025156	98	2.0	98	92	0	331	37	21	10	30	1.87
41027527--41028069	44	12.5	44	70	13	227	28	23	20	28	1.99
41027095--41028069	217	4.5	218	87	1	1409	27	22	20	29	1.99
41027095--41028069	435	2.2	435	93	0	1635	27	22	20	29	1.99
41049618--41049814	98	2.0	98	93	0	340	37	21	10	31	1.87
41050047--41050107	22	2.8	21	79	16	61	59	4	8	27	1.47
41057226--41057259	15	2.2	16	90	10	54	23	0	8	67	1.18
41060586--41060631	20	2.2	21	88	7	76	47	17	0	34	1.48
41060586--41060632	11	4.5	11	84	12	64	46	17	0	36	1.48
41060622--41060665	22	2.0	22	86	8	63	52	6	6	34	1.55
41060613--41060668	27	2.1	27	93	0	94	53	7	7	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41060590--41060660	6	13.2	6	76	16	50	49	12	2	35	1.56
41060651--41060701	18	3.1	18	78	18	65	64	3	7	23	1.37
41063750--41063818	20	3.5	20	77	0	75	11	28	21	37	1.89
41063787--41063830	20	2.2	20	83	0	52	18	27	15	38	1.91
41065765--41065869	25	4.3	24	73	13	81	26	19	20	33	1.96
41065765--41065869	49	2.1	49	83	10	126	26	19	20	33	1.96
41067022--41067103	40	2.0	40	100	0	164	21	4	21	51	1.67
41070432--41070481	17	2.7	20	78	18	70	10	0	44	46	1.37
41075061--41075110	17	2.7	20	78	18	70	10	0	44	46	1.37
41080915--41081040	63	2.0	63	93	0	216	46	16	15	20	1.83
41081903--41081964	26	2.4	26	94	2	108	14	24	14	46	1.82
41083539--41083724	41	4.5	41	93	0	309	23	27	19	29	1.99
41084404--41084464	25	2.5	24	94	5	106	44	11	6	37	1.67
41085495--41085524	14	2.1	15	93	6	53	53	20	0	26	1.46
41091150--41091299	41	3.7	41	92	0	246	23	28	20	28	1.99
41091960--41092019	24	2.6	23	97	2	111	45	11	6	36	1.67
41105890--41105952	29	2.2	28	82	5	72	28	12	15	42	1.84
41106196--41106451	125	2.1	124	87	2	370	29	16	22	32	1.95
41107595--41108808	23	46.6	27	79	14	989	28	0	23	47	1.57
41107614--41108808	51	23.0	52	78	14	876	28	0	22	47	1.56
41107794--41108807	28	38.4	29	80	14	539	28	0	23	47	1.56
41110955--41110988	15	2.3	15	90	5	52	67	5	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41111177--41111279	52	2.0	51	81	9	120	35	0	31	32	1.65
41111229--41111320	22	4.2	22	81	10	116	41	0	28	30	1.56
41111229--41111320	44	2.1	44	87	4	132	41	0	28	30	1.56
41116866--41116908	22	2.0	22	85	0	59	46	16	25	11	1.80
41119912--41119986	19	3.8	19	86	6	114	34	17	12	36	1.87
41124909--41124955	20	2.3	20	82	7	51	21	2	6	70	1.20
41130479--41130525	22	2.1	21	84	7	58	61	19	0	19	1.34
41132599--41132791	29	6.7	29	85	3	210	33	25	16	24	1.96
41134009--41134095	21	4.1	21	78	7	95	37	21	21	18	1.94
41134009--41134095	44	2.0	41	82	6	102	37	21	21	18	1.94
41145583--41145793	113	1.9	113	97	0	404	32	19	11	36	1.87
41146013--41146047	18	1.9	18	88	0	52	14	0	17	68	1.21
41152038--41152071	17	1.9	18	88	5	52	32	0	0	67	0.91
41155541--41155573	10	3.4	10	87	4	50	54	27	6	12	1.60
41155636--41155673	14	2.6	15	84	16	53	2	39	0	57	1.12
41159433--41159484	23	2.3	23	75	0	59	40	3	3	51	1.38
41160690--41160727	5	7.8	5	91	5	60	42	21	21	15	1.89
41163012--41163044	2	16.5	2	100	0	66	48	0	51	0	1.00
41167294--41168205	44	20.7	44	80	5	869	29	26	15	28	1.96
41167310--41168207	132	6.8	131	88	2	1014	29	26	15	28	1.96
41168817--41168865	26	1.9	26	88	12	75	61	8	14	16	1.56
41186101--41186140	4	9.8	4	89	5	62	72	0	2	25	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41194921--41194965	15	3.1	15	83	3	56	75	11	13	0	1.05
41195362--41195471	45	2.6	41	78	9	116	32	5	29	32	1.80
41195617--41195651	18	2.0	17	88	5	52	54	0	0	45	0.99
41195504--41195786	157	1.8	157	96	1	523	42	3	5	48	1.42
41195881--41195915	18	2.0	17	88	5	52	54	0	0	45	0.99
41195837--41196025	59	3.2	59	69	16	181	48	4	3	42	1.41
41195769--41196036	120	2.2	120	97	1	500	48	5	2	43	1.40
41196033--41196259	91	2.5	91	83	6	246	47	3	3	44	1.40
41196102--41196240	47	3.0	46	67	17	117	48	4	3	43	1.40
41198922--41198963	18	2.3	18	100	0	84	23	0	26	50	1.50
41199038--41199124	37	2.4	37	88	3	122	34	11	14	39	1.83
41200244--41200385	71	2.0	69	85	5	187	42	25	7	23	1.81
41200983--41201105	36	3.3	37	86	4	158	53	13	28	4	1.59
41201467--41201521	5	10.8	5	77	14	51	80	0	16	3	0.86
41201476--41201521	12	3.8	12	83	11	67	80	0	17	2	0.81
41201464--41201521	17	3.3	17	90	4	80	79	0	17	3	0.87
41201464--41201524	24	2.6	25	73	19	67	77	0	18	4	0.95
41202766--41203161	50	7.9	50	65	9	182	31	21	21	25	1.98
41202774--41202914	49	2.8	51	76	5	153	34	21	18	24	1.96
41202774--41203166	100	3.9	99	86	2	518	31	21	21	25	1.98
41203712--41203761	26	1.9	26	88	8	75	68	10	14	8	1.40
41204469--41204498	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41206996--41207093	28	3.5	27	81	9	117	31	12	27	28	1.93
41208066--41208171	22	4.7	23	76	10	101	27	13	16	42	1.86
41208066--41208193	22	5.5	23	73	18	97	27	14	15	42	1.85
41208066--41208213	47	3.2	47	86	5	187	28	14	16	41	1.87
41208886--41209139	128	2.0	128	91	1	411	34	21	19	24	1.96
41209199--41209284	44	2.0	44	88	0	127	32	18	23	25	1.97
41212265--41212305	20	2.0	21	95	4	75	29	34	9	26	1.88
41212732--41212756	9	2.8	9	100	0	50	80	0	8	12	0.92
41214061--41214103	22	2.0	22	95	0	77	9	20	27	41	1.83
41218768--41218811	15	2.9	15	86	0	52	36	40	0	22	1.54
41219350--41219399	21	2.3	21	80	10	57	38	34	0	28	1.57
41219513--41219575	29	2.2	30	80	13	78	39	34	1	23	1.65
41219515--41219619	7	14.6	7	73	12	52	37	42	1	18	1.61
41219513--41219583	36	2.0	35	81	8	81	39	35	2	22	1.69
41219579--41219616	14	2.7	14	87	0	58	31	52	0	15	1.43
41220256--41220620	124	3.0	121	86	3	496	29	28	23	18	1.98
41220256--41220620	41	8.9	41	88	2	491	29	28	23	18	1.98
41227328--41227357	15	1.9	15	93	6	51	46	40	0	13	1.43
41227328--41227357	8	3.9	8	95	4	53	46	40	0	13	1.43
41227393--41227504	7	15.7	7	69	14	68	49	28	0	21	1.56
41227844--41228212	41	9.0	41	81	6	367	30	28	19	21	1.97
41228246--41228380	39	3.4	39	80	7	123	21	18	20	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41228260--41228382	40	3.1	38	82	6	129	22	17	19	39	1.92
41229715--41229755	5	8.2	5	91	8	66	0	56	43	0	0.99
41229724--41229753	9	3.2	9	90	9	51	0	60	40	0	0.97
41229715--41229753	19	2.0	20	95	5	71	0	56	43	0	0.99
41229783--41229910	11	12.4	11	72	17	89	37	1	0	60	1.06
41229772--41229838	30	2.2	30	100	0	134	37	0	0	62	0.95
41229770--41229898	39	3.3	39	85	7	188	34	1	0	63	1.04
41229863--41229910	12	4.3	12	72	17	50	37	2	0	60	1.09
41231695--41231889	81	2.4	81	92	3	313	29	20	22	27	1.99
41231695--41231889	40	4.8	41	92	5	315	29	20	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173