genome.fa.s17.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  156  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46943717--46944131	174	2.4	173	90	3	645	32	22	21	23	1.98
46944672--46944709	14	3.1	12	82	17	51	7	13	2	76	1.11
46944677--46944707	14	2.3	13	94	5	53	6	12	3	77	1.08
46945496--46945541	18	2.8	17	83	9	51	19	0	8	71	1.11
46950476--46950515	21	1.9	21	89	0	62	22	10	15	52	1.71
46956141--46956173	13	2.6	13	95	4	59	63	9	15	12	1.51
46957339--46957407	20	3.4	20	82	6	86	21	18	4	55	1.60
46957898--46957941	20	2.2	20	88	4	63	38	6	2	52	1.41
46957936--46957985	20	2.5	19	75	18	57	46	10	10	34	1.71
46961937--46961983	19	2.5	19	79	3	60	57	4	8	29	1.48
46963617--46963700	42	2.0	42	83	4	107	16	36	22	23	1.94
46968185--46968219	16	2.2	17	90	10	56	80	11	0	8	0.92
46969019--46969043	5	5.0	5	100	0	50	0	20	0	80	0.72
46970757--46970897	25	5.5	25	74	12	99	32	7	2	57	1.40
46971049--46971096	16	3.1	15	90	6	69	31	2	2	64	1.16
46971049--46971100	8	6.5	8	82	8	61	30	1	1	65	1.14
46979493--46979521	14	2.1	14	100	0	58	13	13	6	65	1.45
46979528--46980131	74	8.0	73	81	9	662	29	16	20	33	1.94
46979983--46980120	72	1.9	73	90	3	224	31	15	19	32	1.94
46980111--46980145	14	2.5	14	95	0	61	20	20	2	57	1.54
46980051--46980222	91	1.9	91	92	0	290	26	19	19	34	1.96
46980123--46980728	77	7.8	76	76	14	485	27	18	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46980389--46980760	74	5.0	73	86	4	519	27	16	23	32	1.96
46980668--46980888	83	2.6	85	83	9	281	27	14	19	38	1.90
46980912--46980974	14	4.5	14	82	7	74	20	14	4	60	1.52
46980824--46981062	117	2.1	115	81	5	275	24	16	15	43	1.86
46981835--46981967	30	4.4	29	87	1	167	27	47	3	21	1.66
46981850--46981902	18	3.3	18	65	29	55	24	49	3	22	1.66
46982532--46982673	25	5.6	25	72	12	83	33	7	2	57	1.37
46982789--46982871	16	5.5	15	75	12	73	31	2	1	65	1.13
46982824--46982875	8	6.5	8	82	8	61	30	1	1	65	1.14
46985167--46985209	22	2.0	22	86	8	63	25	16	18	39	1.91
46986122--46986168	23	2.0	23	95	0	85	53	10	4	31	1.55
46993764--46993801	19	2.0	19	100	0	76	42	21	0	36	1.53
46994782--46994831	17	2.8	18	82	8	59	66	6	0	28	1.15
46994883--46994926	19	2.4	19	88	3	72	54	4	4	36	1.41
46997233--46997413	90	2.0	91	83	5	233	34	14	17	33	1.91
46999186--46999242	26	2.2	26	81	9	64	56	5	0	38	1.22
47000013--47000054	4	10.5	4	100	0	84	23	0	0	76	0.79
47010846--47010904	26	2.3	25	82	5	64	38	1	8	50	1.43
47011153--47011232	27	2.8	28	81	12	83	62	1	0	36	1.03
47011178--47011257	21	4.0	20	77	7	74	58	0	0	41	0.98
47012732--47012756	11	2.3	11	100	0	50	48	16	8	28	1.74
47014887--47015318	215	2.0	215	93	0	738	33	14	25	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47017285--47017443	43	3.7	42	82	4	167	23	16	27	31	1.97
47017326--47017435	42	2.6	42	86	1	139	25	16	25	32	1.96
47020387--47020444	22	2.6	22	81	7	64	41	17	5	36	1.72
47021908--47022073	73	2.3	73	76	7	167	35	21	24	18	1.96
47028663--47028705	21	2.0	21	82	8	52	69	4	2	23	1.18
47029099--47029137	17	2.4	17	82	4	53	30	0	0	69	0.89
47033207--47033243	18	2.0	19	85	15	51	40	0	8	51	1.32
47033910--47033947	16	2.4	16	90	0	58	31	0	34	34	1.58
47033926--47034023	44	2.2	45	87	1	135	34	6	26	32	1.81
47034058--47034093	18	2.0	18	100	0	72	38	22	11	27	1.88
47034199--47034233	18	2.0	17	88	5	52	54	0	0	45	0.99
47034343--47034384	15	2.9	15	82	10	52	50	0	0	50	1.00
47034093--47034400	155	2.0	157	95	1	557	44	2	5	48	1.39
47034337--47034628	120	2.4	120	90	5	448	49	4	2	43	1.38
47034453--47034504	15	3.6	15	80	12	56	53	1	0	44	1.11
47034584--47034614	15	2.0	16	93	6	55	51	0	0	48	1.00
47034644--47034851	91	2.3	91	89	2	292	48	4	2	44	1.37
47034676--47034819	47	3.1	46	66	20	120	51	4	1	42	1.32
47034578--47034820	91	2.5	96	78	11	266	51	3	2	43	1.29
47034625--47034811	44	4.1	43	69	18	121	49	3	2	44	1.32
47034694--47034832	47	3.0	47	68	17	137	50	5	1	43	1.33
47043839--47044036	100	2.0	97	94	2	342	65	6	6	21	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47044755--47044800	18	2.5	19	89	6	69	15	6	23	54	1.64
47060868--47060934	29	2.3	29	81	0	80	22	16	19	41	1.90
47061836--47061900	28	2.3	29	84	5	80	43	20	15	21	1.88
47064058--47064101	21	2.0	22	83	12	56	50	4	0	45	1.22
47066983--47067019	2	18.5	2	94	0	65	45	2	0	51	1.15
47068132--47068174	21	2.0	21	86	0	59	30	4	0	65	1.13
47068127--47068176	21	2.5	20	77	6	55	28	6	0	66	1.15
47068225--47068256	16	2.0	16	93	0	55	59	0	0	40	0.97
47072526--47072552	5	5.4	5	100	0	54	44	55	0	0	0.99
47077977--47078173	41	4.8	41	97	1	360	26	19	23	30	1.98
47077977--47078215	82	2.9	82	90	3	322	27	20	23	28	1.99
47077977--47078215	123	1.9	123	87	5	349	27	20	23	28	1.99
47085583--47085802	41	5.5	40	90	6	342	27	19	22	30	1.98
47086462--47087397	214	4.4	213	78	10	924	29	19	24	27	1.98
47087048--47087165	43	2.7	42	83	11	125	33	20	22	23	1.97
47086507--47087411	422	2.1	423	84	9	1204	29	19	24	26	1.98
47095049--47095286	41	5.8	41	96	1	433	26	19	22	30	1.98
47095049--47095328	123	2.3	123	90	3	440	27	20	23	29	1.98
47098478--47098564	39	2.2	36	74	20	86	51	6	8	33	1.58
47098792--47098816	3	8.3	3	100	0	50	68	0	0	32	0.90
47104342--47104394	27	1.9	28	85	11	74	60	0	28	11	1.31
47105703--47105734	17	1.9	16	93	6	55	65	3	0	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47107836--47107962	60	2.2	60	86	2	186	30	15	11	42	1.82
47109352--47109395	14	3.1	14	86	3	61	40	0	4	54	1.21
47111082--47111256	41	4.3	42	86	5	121	22	26	19	30	1.98
47111109--47111270	41	4.0	41	91	1	236	22	27	20	29	1.99
47112928--47112952	13	1.9	13	100	0	50	68	24	0	8	1.16
47123978--47124040	29	2.2	29	82	5	74	61	4	1	31	1.26
47126051--47126102	21	2.2	24	74	19	56	32	1	1	63	1.16
47126054--47126128	34	2.4	34	80	14	90	32	1	2	64	1.16
47128386--47128810	81	5.2	81	85	4	563	36	16	14	32	1.89
47128385--47128810	163	2.6	162	84	5	581	36	16	14	31	1.89
47135342--47135385	22	2.0	22	100	0	88	18	4	36	40	1.71
47142725--47142765	4	10.2	4	100	0	82	48	24	0	26	1.51
47146767--47146966	47	4.1	46	74	12	152	25	14	28	33	1.94
47148571--47148621	12	4.2	12	73	9	50	29	7	1	60	1.36
47148580--47148651	33	2.2	32	80	4	81	30	9	1	58	1.39
47151055--47151104	17	2.7	20	78	18	70	10	0	44	46	1.37
47155684--47155733	17	2.7	20	78	18	70	10	0	44	46	1.37
47156315--47156349	16	2.1	16	89	5	52	54	0	2	42	1.15
47164966--47165051	45	1.9	45	87	0	127	32	22	16	29	1.95
47165048--47165243	51	3.9	50	75	4	205	31	28	16	23	1.96
47167972--47168009	15	2.6	15	83	4	51	44	15	7	31	1.75
47170745--47170824	32	2.5	32	82	8	92	28	5	2	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47170745--47170839	33	2.9	32	83	10	104	28	5	3	63	1.32
47170777--47170825	12	4.4	11	77	12	55	26	2	2	69	1.10
47170745--47170836	34	2.8	33	83	9	100	28	4	3	64	1.28
47170861--47170899	10	3.9	10	83	12	53	33	7	0	58	1.26
47170900--47170940	14	2.8	16	82	14	52	31	0	4	63	1.15
47172650--47172841	21	9.1	21	67	7	93	43	17	21	17	1.87
47172648--47172841	42	4.6	42	78	6	176	43	17	22	17	1.88
47172650--47172847	85	2.3	84	82	2	236	43	16	22	17	1.87
47176745--47176800	15	3.6	15	74	9	58	44	8	7	39	1.63
47176751--47176802	17	3.2	16	76	13	52	51	9	7	30	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173