genome.fa.s17.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  36  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9712006--9712037	17	2.0	17	88	11	50	62	15	21	0	1.32
9712763--9712845	40	2.1	41	82	8	100	33	4	20	40	1.74
9713017--9713147	45	3.2	39	77	15	131	20	18	20	40	1.92
9713048--9713149	45	2.2	45	89	1	150	20	16	20	42	1.90
9713265--9713291	7	3.9	7	100	0	54	44	0	14	40	1.46
9720958--9721087	30	4.3	30	82	3	163	25	26	23	24	2.00
9720952--9721087	60	2.3	60	94	0	236	24	26	25	24	2.00
9727606--9727641	15	2.4	15	90	0	54	30	11	0	58	1.33
9728698--9728735	18	2.1	18	90	0	58	34	5	0	60	1.19
9735962--9736035	38	1.9	38	86	0	103	33	22	13	29	1.93
9748055--9748089	17	2.1	17	94	0	61	54	5	20	20	1.64
9764173--9764204	16	1.9	17	93	6	57	37	21	0	40	1.54
9764365--9764534	42	4.0	43	77	12	190	32	27	18	21	1.97
9764365--9764534	43	4.0	42	77	16	181	32	27	18	21	1.97
9766152--9766271	26	4.8	24	74	7	89	35	23	25	15	1.95
9767868--9767904	19	1.9	19	94	0	65	62	2	2	32	1.23
9769216--9769246	6	5.2	6	92	0	53	0	12	16	70	1.16
9773507--9773576	27	2.6	27	80	8	79	25	2	21	50	1.63
9773545--9773612	35	2.0	33	86	13	95	27	2	19	50	1.62
9774921--9774987	34	1.9	35	90	3	109	43	11	10	34	1.76
9775061--9775105	21	2.1	22	87	4	65	62	2	2	33	1.20
9788578--9788639	13	4.8	13	87	0	88	29	9	24	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9789273--9789340	22	3.0	23	68	23	72	45	4	10	39	1.58
9790308--9790332	12	2.1	12	100	0	50	64	20	8	8	1.46
9794434--9794525	23	4.0	22	79	8	103	22	25	17	34	1.96
9801346--9801427	23	3.6	23	91	0	128	19	26	20	32	1.97
9801346--9801450	23	4.4	23	86	6	77	21	26	21	29	1.99
9802676--9802780	45	2.4	44	80	6	115	46	8	18	26	1.77
9809586--9809675	15	6.0	15	86	0	126	26	25	33	14	1.94
9813666--9813746	29	2.9	28	85	5	101	24	28	25	20	1.99
9813693--9813748	29	1.9	29	100	0	112	17	28	30	23	1.97
9813695--9813761	29	2.3	29	89	0	98	19	32	26	20	1.97
9821499--9821556	30	1.9	30	89	0	89	12	31	34	22	1.91
9823376--9823443	6	11.3	6	76	14	61	77	5	2	13	1.06
9823397--9823443	11	4.3	11	82	15	53	80	4	2	12	0.94
9823632--9823661	14	2.1	14	100	0	60	80	0	6	13	0.91
9825209--9825267	29	2.0	29	100	0	118	23	13	20	42	1.88
9835410--9835659	48	5.0	48	72	12	196	36	18	21	23	1.95
9835449--9835564	58	2.0	58	83	9	148	40	14	18	25	1.89
9837103--9837140	18	2.1	18	95	0	67	23	39	28	7	1.83
9841011--9841041	9	3.4	9	90	0	53	25	12	22	38	1.90
9843582--9843630	23	2.1	23	84	0	62	10	14	14	61	1.57
9849033--9849069	19	1.9	20	88	5	58	40	0	16	43	1.48
9850217--9850277	21	2.9	21	85	0	86	40	18	22	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9853123--9853156	12	2.9	11	87	12	50	64	5	2	26	1.30
9853119--9853162	18	2.7	16	82	10	54	61	4	4	29	1.36
9853763--9853815	20	2.4	23	81	12	67	75	9	7	7	1.19
9857052--9857158	23	4.9	23	78	11	118	35	23	21	19	1.96
9857052--9857158	44	2.5	42	81	7	126	35	23	21	19	1.96
9857353--9857450	36	2.6	37	78	13	87	31	22	1	44	1.60
9863636--9863670	16	2.2	16	90	10	54	28	17	2	51	1.59
9867479--9867611	66	2.0	66	86	0	185	26	20	14	39	1.90
9873267--9873543	93	3.0	93	92	0	446	29	23	19	27	1.99
9874870--9875069	81	2.5	81	80	3	215	37	27	17	18	1.93
9875141--9875218	27	2.9	26	75	7	75	29	26	20	23	1.99
9876138--9876194	29	1.9	30	85	3	80	61	10	15	12	1.57
9876315--9876353	10	3.9	10	100	0	78	48	0	0	51	1.00
9879377--9879421	16	2.8	16	82	0	54	46	2	24	26	1.64
9879377--9879428	16	3.2	16	80	0	50	46	1	21	30	1.62
9879632--9879706	23	3.0	25	78	14	68	52	1	0	46	1.09
9879591--9879760	60	2.9	58	81	11	168	54	1	2	41	1.26
9879946--9880081	69	2.0	68	95	1	245	41	13	9	35	1.77
9899111--9899147	18	2.0	19	89	5	58	32	13	13	40	1.84
9904942--9904996	25	2.2	26	78	12	62	47	3	0	49	1.19
9904981--9905015	18	2.0	17	88	5	52	51	0	2	45	1.16
9904868--9905184	157	2.0	157	93	0	544	44	3	4	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9904902--9905155	79	3.2	82	66	14	213	45	3	3	48	1.35
9905118--9905159	15	2.7	16	82	14	52	52	2	0	45	1.13
9905127--9905288	15	10.9	15	65	23	58	50	3	1	44	1.30
9905147--9905340	61	3.2	61	69	16	195	48	5	2	43	1.38
9905116--9905413	120	2.5	121	92	4	496	49	4	2	43	1.36
9905454--9905501	26	1.9	25	84	16	64	52	2	0	45	1.12
9905409--9905637	92	2.5	92	82	8	236	47	3	3	45	1.37
9908654--9908729	33	2.3	33	97	0	143	35	5	15	43	1.70
9908772--9908858	37	2.4	37	94	0	147	35	8	14	41	1.76
9912050--9912090	7	5.9	7	100	0	82	43	0	43	12	1.41
9914622--9914659	19	2.0	19	100	0	76	36	0	31	31	1.58
9915147--9915184	15	2.3	18	82	17	55	52	0	5	42	1.24
9915822--9915932	20	5.6	20	68	8	64	36	18	21	23	1.94
9915820--9915930	40	2.8	40	78	0	132	36	18	21	23	1.94
9918581--9919061	31	15.7	31	84	3	539	29	8	17	45	1.76
9918570--9919061	92	5.4	92	83	5	584	29	7	17	45	1.76
9919963--9919991	10	2.9	10	100	0	58	17	10	31	41	1.83
9923926--9923957	5	6.2	5	92	7	55	75	0	3	21	0.95
9926316--9926487	43	4.0	43	76	8	172	23	18	26	32	1.97
9935779--9935807	14	2.0	15	93	6	51	27	13	20	37	1.91
9945384--9945818	215	2.0	215	95	0	791	36	6	18	38	1.77
9954815--9955075	129	2.0	129	93	0	441	44	17	11	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9961713--9961757	13	3.5	13	76	11	56	37	2	2	57	1.23
9961712--9961771	26	2.3	26	100	0	120	36	3	3	56	1.32
9961726--9961770	13	3.5	13	76	11	56	33	4	4	57	1.38
9975362--9975479	25	4.7	26	68	14	86	30	15	23	30	1.95
9983226--9983291	27	2.5	27	80	11	75	65	3	4	27	1.27
9987731--9987766	16	2.2	16	95	0	63	27	0	33	38	1.57
9987982--9988036	15	3.4	16	80	16	53	54	1	0	43	1.10
9987988--9988036	16	2.9	18	80	20	61	55	0	0	44	0.99
9987889--9988203	156	2.0	157	91	0	506	43	3	6	47	1.45
9994415--9994449	17	2.1	17	100	0	70	45	0	37	17	1.48
9994353--9994511	79	2.0	79	97	0	300	42	7	28	22	1.80
9994432--9994559	62	2.1	62	98	0	247	42	9	26	21	1.83
9997567--9997601	16	2.2	16	94	0	61	28	0	2	68	1.04
9999912--9999952	21	2.0	21	95	0	73	12	19	36	31	1.89
9999914--9999961	21	2.2	21	85	7	60	12	18	35	33	1.89
10001778--10001812	16	2.2	16	89	0	52	28	2	2	65	1.21
10004020--10004064	21	2.2	21	88	4	65	13	15	37	33	1.86
10011660--10011701	20	2.0	21	90	4	68	42	9	16	30	1.80
10015095--10015181	26	3.4	26	68	17	83	31	19	3	45	1.67
10015095--10015198	50	2.1	50	100	0	208	29	19	3	47	1.67
10015120--10015203	24	3.4	24	68	19	73	26	20	3	50	1.64
10015365--10015394	15	1.9	16	93	6	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10016017--10016066	22	2.3	22	86	6	66	36	6	16	42	1.72
10016509--10016626	40	3.0	40	82	5	139	24	14	17	43	1.87
10018162--10018220	28	2.0	30	84	12	79	35	0	5	59	1.20
10018170--10018225	29	1.9	29	82	13	71	37	0	5	57	1.22
10021748--10021859	43	2.6	43	81	8	138	24	21	28	25	1.99
10025290--10025418	67	1.9	68	87	6	190	25	23	16	34	1.95
10025319--10025532	68	3.2	68	85	3	245	23	22	17	35	1.95
10028865--10028891	11	2.5	11	100	0	54	51	0	0	48	1.00
10029535--10029572	15	2.5	15	84	12	51	73	5	0	21	1.02
10029566--10029620	24	2.3	23	84	9	76	34	7	1	56	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173