genome.fa.s17.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  118  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36455754--36455809	24	2.3	24	96	3	103	50	5	0	44	1.25
36455777--36455884	39	2.8	39	86	9	152	49	5	2	42	1.40
36456276--36456304	10	2.9	10	100	0	58	41	0	0	58	0.98
36456616--36456709	49	1.9	49	95	0	170	37	23	6	32	1.80
36459541--36459888	174	2.0	174	99	0	687	33	20	15	30	1.94
36460606--36460693	25	3.5	25	77	0	95	36	26	15	21	1.94
36464220--36464244	13	1.9	13	100	0	50	32	4	8	56	1.47
36470563--36470682	22	5.5	22	77	0	123	40	17	26	15	1.90
36470563--36470686	66	1.9	66	87	0	185	41	16	25	16	1.89
36471661--36471692	11	3.1	11	82	17	50	43	9	0	46	1.35
36480410--36480488	39	2.0	39	92	0	131	41	11	18	27	1.85
36483267--36483302	18	2.0	18	88	0	54	30	2	19	47	1.64
36485374--36485419	22	2.1	21	92	4	74	10	17	28	43	1.82
36487241--36487312	21	3.4	19	73	17	54	66	9	2	20	1.33
36487257--36487315	21	2.8	20	80	10	64	71	8	1	18	1.20
36487485--36487516	5	6.4	5	100	0	64	37	0	0	62	0.95
36490328--36490372	7	6.4	7	81	0	54	35	46	0	17	1.49
36490329--36490376	21	2.2	22	81	3	62	35	47	0	16	1.47
36490894--36491089	41	4.8	41	84	3	234	29	26	21	22	1.99
36490894--36491088	81	2.4	81	85	5	243	29	25	21	23	1.99
36491141--36491243	40	2.6	39	78	4	107	15	23	27	33	1.95
36494997--36495045	21	2.3	21	92	0	80	18	34	2	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36499826--36499963	43	3.2	41	77	8	134	31	20	16	31	1.95
36499826--36500006	86	2.1	87	78	9	192	29	19	19	31	1.97
36499941--36500057	43	2.7	43	89	2	173	23	16	25	35	1.95
36502905--36502948	11	3.8	11	80	11	52	31	0	4	63	1.14
36517689--36517833	43	3.3	43	86	3	209	35	0	16	47	1.52
36517714--36517842	9	14.8	9	70	10	72	36	0	16	46	1.53
36517713--36517841	45	2.6	51	77	15	137	36	0	15	47	1.51
36517823--36517939	53	2.2	53	95	0	207	29	4	11	54	1.56
36518913--36519131	72	3.1	71	75	7	219	46	12	5	34	1.66
36521920--36521967	25	1.9	25	91	8	80	58	0	10	31	1.32
36522223--36522267	21	2.1	22	88	12	67	33	2	33	31	1.70
36527147--36527423	28	9.9	28	87	1	333	36	12	24	27	1.91
36530717--36530901	79	2.3	81	83	7	227	24	22	27	25	2.00
36530718--36530901	40	4.6	40	80	9	198	25	22	27	25	2.00
36530770--36530924	79	2.0	79	82	7	190	26	20	27	25	1.99
36535087--36535168	29	2.8	30	75	14	82	23	18	21	36	1.95
36535092--36535181	29	3.1	29	71	6	76	22	16	23	37	1.93
36551155--36551193	18	2.2	18	100	0	78	35	20	7	35	1.81
36553504--36553589	20	4.2	20	80	1	91	36	20	30	12	1.90
36557059--36557087	14	2.1	14	100	0	58	44	13	13	27	1.82
36558256--36558347	38	2.4	38	82	8	98	32	27	23	16	1.96
36558293--36558392	39	2.6	39	81	0	119	33	27	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36562536--36562712	39	4.6	39	79	5	173	32	3	19	44	1.69
36566855--36567073	43	5.1	43	80	5	255	31	24	16	27	1.97
36566855--36567063	85	2.4	85	86	7	280	31	23	16	27	1.96
36566852--36567090	85	2.8	82	80	9	255	30	24	17	28	1.97
36568061--36568109	23	2.2	22	92	7	82	30	18	10	40	1.84
36570531--36570573	11	3.8	11	81	6	50	32	0	2	65	1.06
36573165--36573352	50	3.6	50	83	4	205	26	20	29	23	1.99
36573166--36573352	100	1.8	103	82	6	245	26	20	29	23	1.99
36575283--36575325	11	3.8	11	81	6	50	32	0	2	65	1.06
36577715--36577774	21	2.9	21	70	9	68	38	10	5	46	1.59
36579110--36579199	40	2.2	40	82	3	110	42	2	33	22	1.66
36579135--36579176	14	2.9	14	82	10	57	47	2	28	21	1.63
36580185--36580382	7	27.9	7	71	9	69	44	30	1	23	1.63
36580186--36580333	57	2.6	57	78	8	151	43	31	1	22	1.62
36580227--36580382	64	2.4	64	80	4	163	46	28	1	23	1.60
36580718--36580803	40	2.2	40	85	4	120	25	23	22	29	1.99
36580732--36580839	40	2.7	40	80	0	108	26	25	20	27	1.99
36580889--36580992	40	2.6	39	89	3	145	27	21	21	29	1.98
36580732--36581146	154	2.7	153	83	0	488	29	21	19	30	1.97
36581072--36581185	40	2.8	40	82	5	149	28	22	21	27	1.99
36590270--36590391	61	2.0	61	98	0	235	30	14	18	36	1.91
36601364--36601402	20	2.0	20	84	0	51	35	5	7	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36604178--36604310	68	1.9	69	82	7	164	36	20	6	36	1.77
36604292--36604333	21	2.0	21	95	0	75	42	11	0	45	1.41
36604214--36604553	94	3.7	92	72	14	270	37	18	6	37	1.76
36604491--36604652	70	2.3	69	82	3	200	38	15	7	38	1.75
36605054--36605264	93	2.3	94	90	3	329	30	22	7	39	1.81
36609328--36609359	6	5.3	6	100	0	64	15	84	0	0	0.63
36609644--36609693	25	2.1	25	88	7	77	26	0	4	70	1.05
36616966--36617011	25	1.9	23	83	16	58	52	8	8	30	1.62
36621005--36621053	18	2.7	18	87	0	71	44	24	6	24	1.76
36630805--36630829	11	2.3	11	100	0	50	48	0	36	16	1.46
36635264--36635328	23	2.8	24	79	9	71	9	12	1	76	1.07
36636310--36636335	9	2.9	9	100	0	52	23	0	42	34	1.54
36641036--36641083	22	2.2	22	85	7	62	27	2	27	43	1.66
36640965--36641093	54	2.4	52	81	2	150	29	1	22	46	1.61
36647631--36647707	30	2.6	29	75	19	77	19	22	32	25	1.97
36671029--36671071	21	2.0	22	81	4	52	55	2	0	41	1.12
36675462--36675522	26	2.4	25	81	5	68	47	14	6	31	1.70
36676843--36676893	12	3.9	13	75	15	52	31	1	0	66	1.03
36677350--36677416	31	2.2	31	94	0	125	17	17	4	59	1.53
36678362--36678429	22	3.2	22	72	8	68	19	16	17	47	1.83
36685596--36685672	19	3.7	21	73	13	59	41	14	5	38	1.68
36685634--36685742	19	5.7	19	86	0	155	38	12	9	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36685634--36685735	38	2.7	38	92	0	177	39	11	8	40	1.73
36686070--36686832	132	5.8	132	93	0	1312	29	23	17	29	1.97
36692984--36693027	20	2.2	20	84	15	56	54	0	2	43	1.12
36693685--36693780	19	4.7	21	74	14	65	40	14	6	38	1.71
36693685--36693742	22	2.6	22	81	7	64	41	17	5	36	1.72
36693721--36693793	19	3.8	19	88	0	119	36	13	9	39	1.78
36696819--36696904	22	3.8	22	83	6	93	31	16	16	36	1.91
36707532--36707728	105	1.9	108	89	3	310	28	18	19	33	1.95
36713379--36714080	86	8.1	87	86	2	797	28	23	23	24	1.99
36713379--36714080	173	4.0	175	85	2	821	28	23	23	24	1.99
36713654--36713789	43	3.2	43	62	15	100	25	19	26	27	1.99
36713379--36714077	259	2.7	261	84	2	852	28	23	23	24	2.00
36714108--36714456	132	2.6	132	86	3	488	30	16	25	27	1.97
36716018--36716061	2	21.5	2	86	4	52	43	0	6	50	1.29
36716727--36716924	105	1.9	106	88	4	301	29	19	19	32	1.96
36727205--36727244	18	2.2	18	90	0	62	40	15	12	32	1.84
36730849--36731117	43	6.3	43	78	5	253	28	29	19	23	1.98
36730849--36731088	129	1.9	128	80	6	288	27	29	19	23	1.98
36734934--36734964	14	2.2	14	94	0	53	32	41	0	25	1.56
36735572--36735688	40	2.9	40	80	5	137	29	26	19	23	1.98
36735729--36735858	40	3.3	40	82	5	140	19	21	21	37	1.94
36738068--36738139	20	3.5	20	76	9	65	15	15	18	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36740704--36740759	28	2.0	28	100	0	112	42	10	10	35	1.74
36741973--36742006	4	8.2	4	96	3	59	50	0	0	50	1.00
36748684--36748708	12	2.1	12	100	0	50	44	0	0	56	0.99
36752852--36752917	6	11.0	6	96	0	123	16	34	0	48	1.47
36757172--36757257	11	8.6	10	69	18	63	50	1	1	47	1.16
36757164--36757243	26	3.3	25	74	19	80	55	1	1	42	1.16
36757172--36757257	21	4.3	20	70	18	63	50	1	1	47	1.16
36757229--36757278	17	2.9	18	80	14	61	44	0	0	56	0.99
36757262--36757291	10	3.0	10	95	0	51	53	0	0	46	1.00
36757486--36757528	22	2.0	22	90	0	68	9	18	27	44	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173