genome.fa.s17.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  160  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48045069--48045118	18	2.8	18	88	8	75	0	22	0	78	0.76
48045072--48045121	15	3.4	15	84	13	68	0	22	0	78	0.76
48046556--48046608	6	8.8	6	91	0	79	54	9	0	35	1.33
48047306--48047340	17	2.1	17	88	0	52	5	11	5	77	1.12
48047361--48047392	16	1.9	17	93	6	57	53	3	0	43	1.16
48047357--48047418	25	2.5	25	79	7	72	50	3	0	46	1.17
48047515--48047565	14	3.4	14	76	12	57	54	1	1	41	1.22
48048067--48048105	17	2.2	19	86	9	55	74	5	15	5	1.17
48049021--48049053	17	1.9	17	88	11	50	39	3	0	57	1.14
48061422--48061897	44	10.9	43	71	12	269	29	21	22	27	1.98
48061420--48061801	90	4.4	84	75	8	290	30	20	21	27	1.98
48061464--48061711	134	1.9	133	82	4	320	28	22	23	25	1.99
48061426--48061762	87	3.9	87	75	10	280	29	20	22	27	1.98
48063759--48063791	17	1.9	17	88	11	50	39	3	0	57	1.14
48070352--48070388	13	2.8	14	84	12	51	0	8	16	75	1.02
48070639--48070741	30	3.4	28	76	12	107	43	0	20	34	1.58
48070605--48070741	61	2.3	60	81	9	147	42	2	21	34	1.65
48070605--48070741	60	2.3	59	81	9	145	42	2	21	34	1.65
48074446--48074498	18	2.9	18	82	0	70	13	22	20	43	1.86
48075824--48075853	3	10.0	3	100	0	60	33	0	0	66	0.92
48079137--48079175	16	2.4	16	82	0	51	35	15	17	30	1.91
48089798--48089838	19	2.0	21	86	9	59	51	29	9	9	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48095167--48095211	23	2.0	23	82	8	56	33	0	4	62	1.15
48096584--48096638	11	5.4	11	74	22	57	60	1	0	38	1.08
48096570--48096613	21	2.1	21	87	8	63	54	2	0	43	1.12
48096787--48096828	20	2.1	20	86	8	59	61	2	7	28	1.35
48098654--48098704	25	2.1	23	82	13	59	74	3	11	9	1.19
48103058--48103136	13	5.6	13	77	14	68	39	1	46	12	1.50
48103068--48103246	43	4.1	43	96	1	313	34	3	52	9	1.52
48103292--48103533	29	8.2	29	94	2	421	51	0	9	38	1.40
48104414--48104463	21	2.4	21	93	0	82	32	38	8	22	1.83
48109255--48109343	11	8.4	11	70	19	73	38	3	0	58	1.15
48109266--48109331	19	3.8	18	68	24	61	36	3	0	60	1.12
48109241--48109358	32	3.8	31	93	6	204	39	2	0	57	1.12
48109326--48109365	21	1.9	21	89	0	62	37	2	0	60	1.11
48109325--48109383	22	2.8	21	80	14	59	40	1	3	54	1.27
48109430--48109464	18	1.9	18	88	11	54	25	17	28	28	1.97
48110272--48110315	22	2.0	23	86	4	63	6	56	2	34	1.38
48114374--48114443	20	3.6	19	81	14	81	34	0	8	57	1.29
48127803--48127862	30	2.0	30	100	0	120	16	10	23	50	1.75
48134093--48134130	18	2.2	18	85	4	51	60	7	5	26	1.46
48145679--48145733	24	2.2	26	81	12	71	45	0	1	52	1.11
48145874--48145964	45	2.0	44	85	2	119	35	28	5	30	1.80
48145945--48145996	16	3.2	16	91	0	77	34	34	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48146170--48146240	31	2.5	28	78	15	74	54	5	8	30	1.53
48154431--48154569	76	1.9	74	86	8	201	38	16	16	28	1.91
48162899--48163006	25	4.5	24	76	7	94	18	24	18	38	1.93
48162883--48163006	49	2.6	48	82	6	126	19	24	20	36	1.95
48162941--48163014	25	3.0	25	82	2	87	22	25	16	35	1.95
48162972--48163025	25	2.2	25	86	0	72	29	27	11	31	1.91
48168228--48168282	28	2.0	28	96	0	101	45	14	5	34	1.68
48193059--48193218	25	6.6	25	80	9	174	38	16	23	22	1.93
48194525--48194622	33	2.9	33	84	7	108	36	22	10	30	1.87
48194837--48195033	41	4.8	41	91	5	308	27	22	21	28	1.99
48203151--48203193	22	2.0	22	90	0	68	27	30	9	32	1.88
48204809--48204901	45	2.1	45	93	0	159	26	8	11	52	1.67
48213277--48213327	20	2.5	20	78	12	59	54	0	1	43	1.11
48217956--48217993	18	2.1	18	100	0	76	34	10	10	44	1.73
48220180--48220250	20	3.6	19	83	7	81	60	4	0	35	1.16
48220179--48220257	20	4.1	20	82	8	67	59	3	0	36	1.16
48225508--48225620	61	1.9	59	83	8	149	49	5	2	42	1.39
48237704--48237733	14	2.1	15	93	6	53	6	10	40	43	1.64
48244772--48244800	5	5.8	5	100	0	58	0	17	0	82	0.66
48247160--48247241	42	2.0	42	100	0	164	46	23	15	14	1.83
48247770--48247808	18	2.2	16	86	13	51	2	7	2	87	0.73
48248820--48248855	18	2.0	17	89	10	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48257844--48257887	23	1.9	23	85	0	61	25	4	15	54	1.60
48260506--48260533	13	2.2	13	100	0	56	53	17	7	21	1.67
48275749--48275881	65	2.0	65	87	5	189	38	12	9	39	1.75
48284154--48284415	99	2.6	99	83	2	267	20	15	26	37	1.92
48284249--48284481	33	7.1	32	74	7	137	20	16	27	34	1.94
48284319--48284457	66	2.1	66	86	0	188	18	16	30	34	1.93
48284342--48284480	66	2.1	66	87	0	197	18	18	30	32	1.95
48286717--48286775	15	3.7	15	74	12	55	20	11	30	37	1.89
48286713--48287277	66	8.5	66	72	2	301	24	15	23	36	1.94
48286712--48287120	99	4.1	98	83	1	431	25	15	23	35	1.94
48286796--48287187	33	11.8	33	71	8	208	25	16	23	35	1.94
48286993--48287090	18	5.8	18	66	16	57	27	13	21	37	1.91
48286885--48287278	166	2.4	166	83	1	414	24	15	22	36	1.94
48287050--48287268	100	2.2	100	85	0	287	22	15	24	36	1.94
48287324--48287435	33	3.4	33	76	3	109	22	18	23	35	1.96
48289053--48289105	26	2.0	26	100	0	106	32	18	15	33	1.92
48295068--48295178	33	3.4	33	79	0	105	19	13	25	41	1.88
48295180--48295280	51	2.0	51	88	0	148	18	25	29	25	1.98
48295222--48295286	33	2.0	33	87	0	94	16	27	32	23	1.96
48295240--48295304	33	2.0	33	84	6	87	20	26	27	26	1.99
48295393--48295541	51	2.9	51	89	0	226	24	22	24	28	1.99
48295510--48295569	15	3.8	15	75	12	57	23	23	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48295495--48295592	33	3.0	33	84	0	115	22	19	26	31	1.98
48296777--48296916	73	1.9	73	89	2	219	32	21	17	28	1.96
48297689--48297728	19	2.0	20	85	4	55	25	0	2	72	0.97
48298114--48298160	20	2.2	21	85	7	60	21	17	2	59	1.47
48298427--48298460	17	2.0	17	88	0	50	29	8	5	55	1.54
48299303--48299361	3	19.7	3	100	0	118	67	0	0	32	0.91
48302681--48302745	33	2.1	30	83	13	80	38	1	1	58	1.17
48302688--48302751	7	8.9	7	73	23	53	40	1	1	56	1.18
48303552--48303585	2	17.5	2	93	6	61	52	0	0	47	1.00
48303798--48303839	11	3.9	11	81	6	50	33	0	2	64	1.07
48304594--48304877	33	8.6	33	76	0	237	20	16	26	36	1.93
48304588--48304880	99	3.0	98	79	3	300	21	16	26	36	1.94
48304876--48304952	33	2.3	33	84	0	91	24	20	23	31	1.98
48304784--48304948	84	2.0	84	86	0	231	22	18	25	33	1.97
48307001--48307155	42	3.7	42	75	17	160	30	26	18	24	1.98
48314264--48314419	42	3.7	42	77	16	169	30	26	18	24	1.98
48315708--48315871	33	5.0	33	80	3	159	21	17	28	32	1.96
48315942--48316090	51	2.9	51	82	0	154	24	22	25	27	2.00
48316044--48316117	33	2.2	33	82	0	94	21	24	29	24	1.99
48316072--48316138	33	2.0	33	82	0	80	20	17	28	32	1.96
48320337--48320379	5	9.0	5	85	10	54	39	4	0	55	1.20
48322444--48322700	33	7.8	33	75	0	192	21	15	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48322450--48322703	66	3.8	66	80	2	224	20	15	26	36	1.93
48322444--48322700	99	2.6	99	79	2	266	21	15	26	36	1.93
48322638--48322751	51	2.2	51	84	4	149	20	20	26	33	1.97
48322615--48322771	84	1.9	84	79	0	179	22	18	25	33	1.97
48322572--48322934	114	3.1	117	86	2	446	20	17	27	34	1.95
48322693--48322829	33	4.2	33	77	0	103	22	18	28	30	1.97
48322744--48322910	81	2.1	81	82	0	199	22	16	27	34	1.95
48322825--48322988	33	5.0	33	81	3	168	21	17	27	32	1.96
48322788--48322991	99	2.1	99	79	7	218	20	17	28	33	1.95
48322828--48322988	66	2.4	66	80	2	189	22	17	26	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173