genome.fa.s17.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  95  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29754081--29754106	13	2.0	13	100	0	52	15	15	30	38	1.88
29761108--29761161	27	2.0	28	85	10	76	42	5	7	44	1.55
29766954--29767098	50	2.8	52	79	12	174	28	14	26	31	1.95
29766950--29767084	51	2.7	49	84	7	157	26	16	27	29	1.97
29771286--29771328	22	1.9	23	90	4	70	65	6	0	27	1.18
29781663--29781735	10	7.4	9	73	23	51	71	0	1	27	0.95
29781669--29781716	12	4.2	12	81	5	55	70	0	2	27	0.98
29781624--29781695	29	2.3	31	88	9	103	65	0	2	31	1.07
29781689--29781755	29	2.3	29	85	7	84	67	0	1	31	1.00
29781669--29781716	11	4.3	11	82	12	62	70	0	2	27	0.98
29781642--29781761	50	2.4	48	80	14	134	68	0	2	29	1.03
29784734--29784760	7	3.9	7	100	0	54	74	11	14	0	1.08
29788661--29788745	43	2.0	44	90	2	136	25	24	27	22	2.00
29793077--29793210	50	2.7	50	85	3	171	25	18	25	30	1.98
29795602--29795652	25	2.0	25	100	0	102	39	19	15	25	1.91
29799102--29799294	101	1.9	102	86	3	273	24	17	26	31	1.97
29799099--29799294	51	3.9	50	78	3	196	23	17	27	31	1.97
29805450--29805537	42	2.1	42	86	0	122	27	19	30	22	1.98
29811726--29811757	8	4.1	8	92	8	57	62	0	12	25	1.30
29811726--29811756	15	2.1	15	100	0	62	61	0	12	25	1.32
29811704--29811840	26	5.4	26	77	11	151	48	6	18	25	1.72
29811704--29811840	51	2.7	50	83	8	147	48	6	18	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29821623--29821685	29	2.2	29	91	0	99	26	20	11	41	1.86
29843549--29843593	23	2.0	23	90	0	72	57	4	6	31	1.44
29843642--29843893	24	10.8	24	71	16	163	55	5	4	34	1.43
29843664--29843891	69	3.3	69	79	7	207	55	4	5	34	1.43
29843642--29843892	45	5.4	48	70	18	131	55	5	4	34	1.43
29843731--29843898	70	2.4	69	80	5	187	57	4	5	32	1.42
29844727--29844771	22	2.0	22	86	4	63	33	17	6	42	1.76
29844750--29844804	19	2.9	19	97	0	101	30	20	10	38	1.87
29845122--29845248	51	2.5	50	82	5	130	25	22	18	33	1.97
29845236--29845278	21	2.0	21	90	0	68	23	37	4	34	1.76
29845164--29845386	123	1.8	123	82	0	284	27	26	16	30	1.97
29845528--29845760	46	5.0	46	83	5	286	28	27	18	26	1.98
29845528--29845792	92	2.8	95	81	5	311	30	26	17	26	1.97
29846586--29846610	12	2.1	12	100	0	50	36	8	32	24	1.84
29848110--29848147	16	2.3	17	90	4	60	2	18	0	78	0.86
29848109--29848147	11	3.6	11	82	6	53	2	20	0	76	0.90
29848110--29848163	21	2.5	21	84	6	63	7	20	0	72	1.08
29850278--29850325	19	2.5	19	80	6	53	45	6	16	31	1.72
29850757--29850791	16	2.2	16	89	0	52	42	22	17	17	1.88
29852267--29852320	23	2.3	23	80	3	63	55	3	7	33	1.45
29852360--29852608	24	10.7	24	70	16	139	55	4	4	34	1.41
29852382--29852608	69	3.3	69	77	6	194	55	4	4	34	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29852459--29852608	47	3.2	44	76	12	124	58	2	4	34	1.33
29853470--29853516	18	2.5	19	89	6	78	31	17	12	38	1.87
29863443--29863995	272	2.0	272	98	0	1072	43	6	17	32	1.76
29865746--29865788	20	2.2	19	83	4	50	13	23	27	34	1.93
29866957--29867012	29	1.9	29	92	0	94	17	21	35	25	1.95
29872467--29872498	12	2.7	12	95	0	55	15	40	18	25	1.90
29876107--29876297	41	4.6	41	92	1	303	28	20	28	22	1.98
29884531--29884587	28	2.0	28	86	6	80	29	21	17	31	1.96
29887222--29887347	35	3.6	35	81	4	112	40	31	12	15	1.84
29887923--29887984	31	2.0	31	100	0	124	41	19	6	32	1.77
29889320--29889354	18	1.9	18	94	0	61	48	17	8	25	1.75
29890896--29890935	19	2.1	19	85	0	53	25	7	0	67	1.16
29891201--29891257	3	20.3	3	74	13	50	57	0	3	38	1.16
29892490--29892567	34	2.3	34	88	0	111	32	5	16	46	1.69
29899556--29899728	50	3.3	51	87	6	224	21	30	21	25	1.99
29902929--29903014	43	2.0	43	97	0	163	33	19	4	41	1.72
29903030--29903111	41	2.0	41	100	0	164	26	12	7	53	1.64
29905224--29905303	40	2.0	40	100	0	160	40	17	10	32	1.83
29905473--29905499	14	1.9	14	100	0	54	18	22	51	7	1.70
29912840--29912889	15	3.2	15	83	8	64	60	2	0	38	1.09
29916691--29916730	14	2.9	13	85	10	53	65	0	35	0	0.93
29916802--29916827	12	2.2	12	100	0	52	38	0	15	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29916894--29916960	22	3.2	22	83	10	77	26	1	10	61	1.37
29916875--29917061	101	1.9	101	90	2	304	28	1	13	56	1.44
29916995--29917132	49	3.2	41	79	16	161	31	1	13	53	1.48
29917033--29917154	49	2.5	49	90	0	199	33	0	12	53	1.44
29917033--29917154	27	4.9	27	77	16	138	33	0	12	53	1.44
29916892--29917132	19	12.5	19	69	21	137	31	1	12	55	1.45
29920381--29920460	27	3.0	27	77	3	81	26	32	22	18	1.97
29924750--29924823	13	5.7	13	76	6	78	40	25	6	27	1.80
29927361--29927536	63	2.8	63	80	3	192	24	23	20	31	1.98
29928040--29928079	21	1.9	21	89	0	62	75	5	20	0	0.99
29930231--29930290	30	2.0	30	83	3	77	43	18	11	26	1.84
29932336--29932392	27	2.1	28	93	3	98	43	0	15	40	1.47
29945265--29945322	29	2.0	29	93	0	98	20	24	17	37	1.93
29954754--29954793	15	2.7	15	100	0	80	25	7	20	47	1.75
29961708--29961734	5	5.4	5	100	0	54	81	0	0	18	0.69
29963497--29963657	38	4.3	37	77	7	139	32	18	18	30	1.95
29963497--29963657	76	2.1	76	81	3	182	32	18	18	30	1.95
29965607--29965792	40	4.7	40	85	4	234	25	20	26	26	1.99
29965607--29965792	79	2.3	79	83	4	232	25	20	26	26	1.99
29965607--29965815	80	2.6	78	82	5	226	26	20	26	26	1.99
29971227--29971346	56	2.1	56	98	0	231	45	9	23	22	1.81
29972475--29972699	40	5.7	40	82	5	260	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29972528--29972732	80	2.6	79	84	4	236	25	20	27	26	1.99
29979925--29979970	5	9.4	5	79	13	51	56	2	0	41	1.11
29982550--29982626	37	2.1	37	90	0	118	41	11	5	41	1.64
29987300--29987454	30	5.2	30	84	4	197	20	26	18	34	1.96
29987300--29987454	60	2.6	60	92	2	249	20	26	18	34	1.96
29987445--29987642	30	6.7	30	81	4	170	19	25	12	41	1.87
29987445--29987515	29	2.4	30	88	2	99	19	28	8	43	1.80
29987439--29987605	89	1.9	90	83	3	221	21	26	12	39	1.89
29987410--29987708	119	2.5	119	88	1	429	21	25	14	39	1.91
29987300--29987696	60	6.7	60	73	6	232	21	25	15	37	1.93
29987624--29987696	30	2.4	30	90	0	119	23	23	12	41	1.88
29989156--29989223	14	4.9	16	74	22	57	41	0	5	52	1.25
29989156--29989236	26	3.0	27	85	7	94	39	0	4	55	1.21
29999102--29999140	14	2.8	14	88	11	62	30	15	10	43	1.80
30002515--30002549	11	3.3	11	88	4	54	20	5	0	74	1.02
30006654--30006732	21	3.8	21	84	0	104	1	39	21	37	1.62
30011189--30011323	7	18.4	7	66	17	51	34	41	1	22	1.63
30011193--30011303	22	5.3	21	78	16	115	32	43	1	22	1.64
30011193--30011265	38	1.9	37	88	2	110	31	43	2	21	1.67
30011211--30011295	15	5.6	16	75	17	67	31	42	1	24	1.62
30011240--30011302	7	8.7	7	79	6	63	31	46	0	22	1.52
30011189--30011298	29	3.7	29	71	15	82	32	42	1	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30011220--30011320	22	4.6	21	79	13	80	31	43	0	23	1.61
30013186--30013383	41	4.8	41	78	7	206	34	23	24	17	1.96
30013186--30013383	82	2.4	82	91	1	308	34	23	24	17	1.96
30014984--30015063	32	2.5	32	79	4	81	18	23	23	33	1.97
30015278--30015319	17	2.5	17	84	0	57	19	28	33	19	1.96
30028184--30028270	26	3.4	26	77	4	97	19	11	26	42	1.85
30029486--30029527	21	2.0	21	86	9	59	23	14	19	42	1.87
30033039--30033113	38	2.0	38	91	0	123	30	8	17	44	1.77
30036007--30036260	26	9.8	26	75	3	163	18	14	27	39	1.90
30036007--30036234	52	4.4	51	77	6	183	17	15	26	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173