genome.fa.s17.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  76  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23421635--23421858	40	5.7	40	82	7	242	25	21	27	25	1.99
23421635--23421858	79	2.8	78	82	6	254	25	21	27	25	1.99
23421715--23421891	79	2.3	79	82	4	198	25	22	28	24	1.99
23429220--23429444	80	2.8	79	82	4	256	25	21	28	25	1.99
23429220--23429442	40	5.6	39	81	7	225	25	21	27	25	1.99
23429300--23429477	79	2.2	80	82	3	200	25	21	28	24	1.99
23433465--23433622	42	3.8	42	92	0	253	31	17	21	29	1.96
23434899--23434955	28	2.0	28	96	0	105	28	22	14	35	1.93
23435487--23435518	15	2.1	15	94	0	55	0	28	15	56	1.40
23443887--23443920	17	2.1	16	88	5	50	76	14	0	8	1.01
23451883--23451998	49	2.4	48	82	5	126	24	25	19	30	1.98
23451921--23452113	50	3.7	49	77	6	170	24	27	21	26	1.99
23459194--23459243	12	4.2	12	78	0	55	18	24	6	52	1.67
23459444--23459626	50	3.7	50	77	3	156	22	25	22	29	1.99
23459495--23459688	50	3.7	49	76	10	163	24	27	21	26	1.99
23478202--23478230	14	2.1	14	100	0	58	6	27	24	41	1.80
23485006--23485146	49	2.8	50	85	1	203	38	26	12	23	1.90
23487474--23487622	29	5.1	29	86	0	199	36	13	26	22	1.92
23487473--23487622	58	2.6	58	91	0	237	36	13	26	23	1.92
23487918--23488025	53	2.0	54	94	1	191	22	8	16	52	1.70
23493670--23493739	35	2.0	36	83	13	92	42	1	2	52	1.24
23500600--23500720	57	2.1	58	80	7	140	51	3	5	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23501982--23502199	45	4.9	45	88	1	278	25	16	26	32	1.96
23506285--23506368	28	3.2	27	65	22	70	32	26	16	25	1.96
23506225--23506469	101	2.4	100	85	4	323	30	26	16	26	1.97
23506221--23506495	101	2.7	99	80	8	286	30	26	15	27	1.96
23515971--23516170	51	3.9	50	78	7	197	27	15	27	31	1.95
23521698--23521799	37	2.8	37	93	0	168	26	29	18	25	1.98
23521918--23522657	47	15.6	47	93	2	1237	29	28	8	33	1.87
23521918--23522657	143	5.2	141	93	1	1237	29	28	8	33	1.87
23528135--23528332	51	3.9	50	76	5	184	27	16	26	30	1.96
23530090--23530148	27	2.1	28	90	3	93	10	15	37	37	1.81
23532158--23532336	50	3.6	50	83	3	207	27	22	28	21	1.99
23534013--23534067	24	2.3	24	80	0	74	43	3	23	29	1.71
23537079--23537108	12	2.5	12	94	0	51	6	30	40	23	1.80
23542683--23542730	20	2.5	20	80	10	55	35	20	29	14	1.93
23542714--23542802	40	2.2	39	86	7	117	31	23	31	13	1.93
23542737--23542802	20	3.3	20	67	0	60	31	22	34	10	1.88
23562667--23562830	60	2.8	58	75	7	159	33	25	15	26	1.95
23566739--23566920	40	4.6	40	83	7	221	25	28	21	24	1.99
23566739--23566920	79	2.3	80	83	6	219	25	28	21	24	1.99
23578802--23579023	40	5.7	40	86	7	278	24	22	27	25	2.00
23578802--23579021	116	1.9	117	83	7	286	25	22	27	25	2.00
23584734--23584958	40	5.7	40	84	6	271	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23592582--23592794	63	3.4	63	84	1	257	32	20	20	25	1.97
23592858--23592930	33	2.2	33	90	0	119	41	19	13	26	1.88
23592915--23592955	18	2.3	18	95	0	73	41	19	9	29	1.83
23597226--23597292	18	3.6	18	82	7	80	62	1	23	11	1.37
23597215--23597324	56	2.0	55	84	12	145	65	1	21	10	1.33
23599361--23599422	22	2.6	25	72	25	62	43	8	19	29	1.79
23603028--23603058	16	1.9	16	100	0	62	54	25	6	12	1.62
23604988--23605055	30	2.4	29	80	11	79	11	19	1	67	1.29
23605026--23605065	15	2.6	15	84	15	55	7	20	5	67	1.34
23605062--23605103	18	2.3	18	87	0	66	11	16	2	69	1.29
23605997--23606049	27	2.0	26	88	3	79	15	15	5	64	1.47
23612758--23612818	30	2.0	30	93	0	104	39	16	8	36	1.78
23621742--23621925	60	3.1	60	84	0	217	31	24	17	26	1.97
23623935--23624129	63	3.1	63	81	1	194	33	21	20	25	1.97
23624244--23624316	33	2.2	33	95	0	128	41	20	13	24	1.89
23624299--23624341	18	2.4	18	88	0	59	39	25	9	25	1.85
23625483--23625522	20	2.1	19	86	13	55	50	5	35	10	1.58
23643059--23643201	77	1.9	77	95	0	259	38	16	18	26	1.92
23643310--23643389	40	2.0	40	100	0	160	25	17	22	35	1.95
23644516--23644555	21	1.9	21	94	0	71	40	22	7	30	1.81
23645653--23645836	60	3.1	60	83	2	219	32	22	17	28	1.96
23655535--23655785	27	9.3	27	80	5	213	36	21	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23655549--23655785	107	2.2	108	82	4	291	36	21	21	19	1.95
23655549--23655777	54	4.3	54	80	3	248	36	20	22	19	1.95
23655795--23655853	24	2.5	24	80	5	66	23	5	23	47	1.71
23655922--23655979	27	2.1	27	81	12	66	20	24	20	34	1.97
23655935--23655987	27	2.0	27	81	7	63	24	24	18	32	1.97
23656025--23656207	64	2.9	64	82	3	199	22	21	19	35	1.96
23656025--23656207	32	5.7	31	86	2	179	22	21	19	35	1.96
23656124--23656226	32	3.3	31	84	2	82	23	21	18	36	1.95
23656437--23656507	28	2.5	28	77	4	81	19	25	22	32	1.98
23658001--23658141	62	2.3	63	82	7	180	30	25	21	21	1.99
23658406--23658440	19	1.9	19	88	11	56	31	11	14	42	1.81
23659824--23659929	33	3.2	33	98	0	203	42	20	12	24	1.86
23659912--23659948	18	2.1	18	94	0	65	37	29	10	21	1.88
23659908--23659945	9	4.2	9	80	12	51	42	26	10	21	1.85
23661074--23661434	54	6.7	54	83	1	393	43	21	15	19	1.87
23661073--23661434	81	4.5	81	82	6	432	43	20	15	19	1.87
23661074--23661434	27	13.4	26	80	6	355	43	21	15	19	1.87
23661847--23661990	28	5.2	27	85	4	191	25	22	22	29	1.99
23661844--23661990	55	2.7	56	82	11	212	25	22	21	30	1.99
23662980--23663013	12	2.8	12	95	0	59	32	17	35	14	1.91
23664046--23664326	27	10.4	27	87	1	366	43	22	17	17	1.88
23666108--23666292	102	1.8	102	88	3	284	24	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23666108--23666292	51	3.6	51	81	5	205	24	17	25	31	1.97
23666296--23666386	45	2.0	45	91	0	146	26	16	24	32	1.96
23666434--23666477	23	1.9	22	82	17	54	38	0	25	36	1.56
23679850--23679940	28	3.2	28	83	6	103	26	25	19	28	1.99
23681405--23681590	40	4.7	40	84	7	227	25	27	23	24	2.00
23681405--23681590	79	2.3	82	83	8	231	25	27	23	24	2.00
23689286--23689470	79	2.3	82	83	7	229	24	27	22	24	2.00
23689267--23689470	40	5.1	40	81	8	229	24	27	22	25	2.00
23694926--23695064	50	2.8	50	80	0	152	27	22	28	22	1.99
23695806--23695844	20	2.0	20	90	10	62	15	23	5	56	1.59
23696741--23697268	289	1.8	288	91	1	869	40	15	13	29	1.86
23703666--23703704	20	2.0	20	90	10	62	15	23	5	56	1.59
23720648--23720687	18	2.3	17	83	8	53	77	2	15	5	1.04
23728844--23728885	14	2.9	15	83	13	52	26	9	4	59	1.48
23728844--23728881	16	2.5	16	87	8	53	26	7	5	60	1.46
23731596--23731651	29	1.9	29	100	0	112	21	30	19	28	1.98
23736574--23736667	22	4.3	22	88	0	116	28	12	21	37	1.90
23736576--23736667	44	2.1	44	87	0	130	27	13	21	38	1.90
23755641--23755718	38	2.1	38	95	0	138	42	6	24	26	1.79
23755797--23755839	20	2.2	19	88	12	61	55	4	20	18	1.60
23756350--23756416	35	1.9	35	82	11	84	32	7	20	38	1.81
23768405--23768477	17	4.0	17	71	15	65	61	0	1	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23768419--23768480	10	6.4	10	74	22	53	67	0	1	30	1.00
23768479--23768504	11	2.4	11	100	0	52	53	0	7	38	1.30
23768939--23769003	10	6.5	10	69	13	53	36	0	3	60	1.13
23768940--23768992	11	4.8	11	79	6	54	35	0	3	60	1.15
23771180--23771274	35	2.7	34	80	4	109	41	16	15	26	1.89
23772952--23773050	28	3.6	27	84	9	119	31	12	28	28	1.92
23775386--23775436	20	2.7	18	80	11	66	47	9	39	3	1.55
23783632--23783665	16	2.1	17	88	5	52	38	11	5	44	1.65
23793726--23793763	19	2.0	19	94	0	67	39	26	7	26	1.83
23795265--23795307	11	4.1	11	85	11	54	41	0	34	23	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173