genome.fa.s17.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  169  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50785009--50785041	17	1.9	17	93	0	57	63	0	0	36	0.95
50786775--50786908	43	3.1	43	92	0	214	29	28	17	23	1.97
50791071--50791131	11	5.3	11	75	11	59	50	0	3	45	1.17
50791070--50791160	24	4.2	22	71	24	70	51	0	2	46	1.13
50791118--50791150	16	2.0	17	94	5	59	54	0	0	45	0.99
50799879--50799905	14	1.9	14	100	0	54	37	25	7	29	1.83
50808562--50808586	13	1.9	13	100	0	50	48	0	12	40	1.40
50810839--50810878	19	2.1	20	86	9	57	72	0	12	15	1.12
50810943--50810995	21	2.5	20	82	11	61	77	1	3	16	1.01
50810957--50810999	13	3.2	13	84	12	52	79	2	0	18	0.85
50819691--50819748	29	2.0	29	83	6	73	43	0	5	51	1.24
50822041--50822074	18	1.9	18	88	5	52	61	5	0	32	1.20
50825214--50825260	24	1.9	24	86	4	67	36	0	38	25	1.56
50825834--50825899	27	2.4	27	80	14	82	40	24	15	19	1.90
50826283--50826369	28	3.1	28	82	8	115	26	25	19	28	1.99
50828680--50828849	27	6.3	26	80	5	169	42	19	20	17	1.89
50828679--50828835	54	2.9	53	81	3	188	43	19	20	16	1.88
50829252--50829328	28	2.8	28	79	0	73	25	24	23	25	2.00
50837509--50837587	27	3.0	27	87	9	117	44	21	16	17	1.87
50838047--50838122	34	2.2	34	90	0	125	19	18	22	39	1.92
50838628--50838660	18	1.9	17	88	11	50	42	12	15	30	1.83
50840077--50840131	24	2.3	23	84	9	65	36	3	1	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50841112--50841156	22	2.0	23	83	12	58	66	4	11	17	1.38
50841687--50841731	23	2.0	23	86	8	65	73	8	0	17	1.08
50847535--50847604	15	4.7	14	72	18	52	42	8	2	45	1.49
50849689--50849728	21	2.0	21	85	9	57	32	0	2	65	1.06
50858251--50858282	16	2.0	16	93	0	55	34	0	6	59	1.23
50858252--50858286	18	1.9	18	94	0	61	34	0	5	60	1.21
50859696--50859720	12	2.1	12	100	0	50	68	0	16	16	1.22
50865574--50865817	46	5.6	45	83	10	303	34	14	22	28	1.94
50865610--50865682	36	2.0	36	94	0	128	36	13	20	28	1.91
50865574--50865817	82	2.8	85	83	11	311	34	14	22	28	1.94
50866469--50866531	20	3.0	20	80	8	72	31	1	9	57	1.40
50870728--50870800	38	1.9	38	94	0	128	45	5	9	39	1.60
50883093--50883274	89	2.0	89	95	0	328	41	20	19	17	1.90
50889735--50890161	212	2.0	213	96	1	788	31	9	15	43	1.80
50914596--50914886	142	2.1	138	89	5	442	38	7	17	36	1.79
50915277--50915311	3	11.7	3	100	0	70	31	0	0	68	0.90
50930400--50930425	13	2.0	13	100	0	52	61	0	0	38	0.96
50930535--50930578	20	2.2	20	84	8	54	61	4	0	34	1.16
50935165--50935208	24	2.0	23	86	13	65	54	0	0	45	0.99
50936360--50936406	23	2.0	24	87	4	69	38	12	6	42	1.69
50938605--50938658	2	28.5	2	78	10	60	51	0	0	48	1.00
50946021--50946065	24	1.9	23	90	4	72	13	0	26	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50948494--50948543	19	2.7	19	73	14	50	70	2	2	26	1.09
50948465--50948565	18	5.5	18	71	20	59	63	1	1	32	1.17
50948688--50948713	12	2.2	12	100	0	52	76	0	0	23	0.78
50948993--50949046	19	2.7	19	78	13	56	35	0	3	61	1.14
50949128--50949185	7	8.1	7	81	11	55	25	0	1	72	0.94
50949122--50949185	21	3.0	21	77	9	67	26	0	1	71	0.94
50949129--50949229	7	12.8	8	70	19	54	27	0	1	69	1.06
50949189--50949218	15	2.1	15	93	6	53	30	0	0	70	0.88
50970588--50970652	20	3.2	20	77	4	67	46	1	1	50	1.20
50980183--50980213	15	2.0	16	93	6	55	58	0	0	41	0.98
50986405--50986490	31	2.9	30	79	5	84	40	9	11	38	1.74
50989113--50989147	18	1.9	18	94	0	61	48	5	8	37	1.58
51005689--51005715	12	2.2	12	100	0	54	29	0	0	70	0.88
51008742--51008769	14	2.0	14	100	0	56	64	0	0	35	0.94
51008731--51008776	23	2.0	23	87	8	67	58	0	2	39	1.10
51009739--51009807	30	2.3	30	80	5	77	33	13	5	47	1.66
51009802--51009858	28	2.0	28	82	0	69	42	14	3	40	1.62
51010697--51010813	31	3.9	30	71	18	82	41	5	15	37	1.69
51016138--51016187	24	2.1	24	100	0	100	18	32	4	46	1.67
51021612--51021637	13	2.0	13	100	0	52	30	15	0	53	1.42
51032234--51032274	21	2.0	21	90	0	64	29	21	29	19	1.98
51037261--51037322	27	2.3	27	91	0	97	11	37	27	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51041726--51041793	29	2.3	30	80	9	77	66	2	1	29	1.15
51049729--51049778	24	2.1	24	96	0	91	46	26	14	14	1.81
51050581--51050642	28	2.2	28	88	5	90	22	0	22	54	1.44
51051016--51051059	17	2.5	17	88	3	61	47	9	6	36	1.62
51055968--51056027	2	30.0	2	100	0	120	0	50	0	50	1.00
51056681--51056715	2	17.5	2	87	0	52	48	0	0	51	1.00
51059370--51059403	17	1.9	17	88	5	50	52	0	2	44	1.16
51061748--51061807	31	1.9	31	96	0	111	30	11	13	45	1.79
51063423--51063494	31	2.3	32	80	7	85	56	12	6	23	1.60
51067373--51067813	223	2.0	223	87	1	643	33	17	13	35	1.89
51075801--51075994	97	2.0	97	100	0	388	36	20	18	24	1.95
51087849--51088239	203	1.9	200	96	2	721	41	14	10	33	1.80
51088877--51088902	12	2.2	12	100	0	52	69	7	0	23	1.14
51100777--51100822	12	3.8	12	79	0	56	30	52	0	17	1.45
51100821--51100851	3	10.3	3	92	0	53	0	64	0	35	0.94
51100918--51100997	39	2.1	39	88	4	117	32	42	3	21	1.70
51110578--51110823	101	2.4	101	88	0	366	30	25	13	30	1.94
51115104--51115173	33	2.1	33	86	5	97	27	32	5	34	1.80
51115835--51115920	40	2.1	42	93	4	149	27	9	6	55	1.57
51129135--51129180	22	2.1	22	100	0	92	13	15	17	54	1.71
51133333--51133439	52	2.1	51	89	5	162	20	11	26	42	1.85
51137590--51137614	7	3.6	7	100	0	50	56	12	0	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51142336--51142374	20	2.0	20	84	0	51	35	7	12	43	1.72
51150162--51150253	38	2.3	40	83	7	116	40	1	7	51	1.38
51157662--51157776	39	2.9	39	64	19	94	37	19	4	39	1.71
51161788--51161817	5	6.0	5	92	0	51	36	0	0	63	0.95
51162907--51162939	17	1.9	17	88	11	50	39	21	9	30	1.84
51163710--51163867	86	1.8	86	84	2	219	33	17	22	26	1.96
51164284--51164323	17	2.3	18	86	4	55	55	5	0	40	1.22
51164289--51164341	25	2.2	24	83	10	63	54	5	1	37	1.35
51164694--51164727	18	1.9	17	94	5	59	0	58	0	41	0.98
51164787--51164849	25	2.4	27	77	17	71	4	33	1	60	1.27
51167637--51167713	14	5.0	15	71	20	52	42	15	9	32	1.78
51167653--51167692	20	2.0	20	90	0	62	50	12	10	27	1.72
51167641--51167707	34	1.9	35	90	3	109	46	13	8	31	1.74
51167676--51167715	14	2.9	14	84	0	53	42	17	7	32	1.77
51169153--51169185	16	2.1	16	94	0	57	48	24	0	27	1.51
51169680--51170395	205	3.5	205	87	2	929	18	15	12	52	1.74
51170016--51170746	115	6.5	112	73	15	380	21	13	12	52	1.73
51170247--51170746	116	4.4	117	75	12	319	21	13	13	51	1.75
51170480--51170746	112	2.4	111	81	9	305	20	11	13	53	1.70
51175090--51175130	22	1.9	21	85	5	55	39	24	7	29	1.82
51184745--51185086	122	2.8	124	92	1	546	27	14	22	35	1.93
51187679--51187934	104	2.4	105	94	1	444	19	21	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51190746--51191021	37	7.5	37	97	0	516	50	2	7	39	1.45
51191023--51191800	29	26.4	29	87	6	1020	23	0	30	46	1.53
51192979--51193004	7	3.7	7	100	0	52	57	15	0	26	1.38
51194182--51194229	22	2.2	22	96	0	87	43	0	31	25	1.55
51194142--51194307	73	2.3	73	94	0	296	45	0	27	26	1.58
51194252--51194302	22	2.3	22	93	0	84	43	0	29	27	1.55
51195029--51195741	175	4.1	175	87	1	948	21	12	21	43	1.86
51195991--51196046	25	2.2	24	75	9	58	48	21	3	26	1.66
51196003--51196060	25	2.4	25	85	2	73	46	25	1	25	1.62
51198990--51199057	31	2.2	31	83	0	82	52	14	5	26	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173