genome.fa.s17.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  146  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44247233--44247287	11	4.9	11	75	20	60	41	0	30	27	1.56
44247233--44247287	22	2.5	22	83	16	69	41	0	30	27	1.56
44254068--44254102	18	2.0	17	88	5	52	20	0	2	77	0.90
44259072--44259224	17	9.0	17	64	21	70	53	3	0	42	1.22
44259052--44259514	119	3.9	120	94	2	798	52	4	1	42	1.30
44259199--44259511	38	8.1	38	64	21	89	52	4	1	41	1.31
44259285--44259336	15	3.6	15	78	14	56	57	0	0	42	0.98
44259309--44259511	55	3.6	55	70	22	168	52	4	1	41	1.32
44259489--44259529	21	2.0	21	95	0	73	56	7	0	36	1.27
44262008--44262036	14	2.1	14	100	0	58	34	0	20	44	1.52
44263387--44263414	9	3.1	9	100	0	56	57	0	0	42	0.99
44264537--44264590	19	2.8	19	94	0	99	37	16	9	37	1.81
44264514--44264590	38	1.9	40	87	10	113	38	16	7	36	1.78
44264874--44264978	42	2.5	42	87	4	140	49	1	8	40	1.44
44264974--44265037	2	33.0	2	73	6	51	46	1	6	45	1.37
44264970--44265037	10	7.0	10	71	18	63	45	1	7	45	1.40
44264987--44265039	22	2.7	20	81	16	65	49	0	7	43	1.31
44264959--44265030	12	6.3	12	72	18	57	45	1	8	44	1.42
44266942--44267073	60	2.2	60	86	0	183	37	15	11	36	1.83
44268635--44268694	28	2.1	29	87	3	86	41	1	3	53	1.27
44270565--44270759	98	2.0	98	95	0	354	29	9	23	37	1.87
44272869--44272933	31	2.1	31	83	11	80	52	6	18	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44275847--44275905	12	4.9	12	71	22	52	50	1	0	47	1.11
44281076--44281158	42	2.0	42	85	0	112	15	18	19	46	1.83
44281961--44282103	40	3.6	40	76	9	141	31	24	16	27	1.96
44288802--44288828	13	2.1	13	100	0	54	55	7	0	37	1.28
44290365--44290409	23	2.0	23	82	8	56	44	8	2	44	1.47
44293531--44293739	92	2.3	90	85	9	271	46	3	3	46	1.37
44293667--44293714	26	1.9	25	84	16	64	45	0	2	52	1.12
44293793--44294003	66	3.4	63	68	21	183	41	3	6	48	1.45
44293762--44294047	120	2.4	120	93	3	479	42	2	5	49	1.39
44293880--44293931	15	3.6	15	80	12	56	44	0	1	53	1.11
44294009--44294050	15	2.7	16	82	14	52	45	0	2	52	1.13
44294000--44294041	15	2.9	15	82	10	52	47	0	0	52	1.00
44294152--44294186	18	2.0	17	88	5	52	45	0	0	54	0.99
44293984--44294296	153	2.0	156	95	2	560	47	5	3	44	1.41
44294329--44294438	45	2.6	41	78	8	107	33	28	5	32	1.80
44294419--44294454	16	2.2	16	100	0	72	38	36	0	25	1.56
44296424--44296492	35	2.0	35	88	0	102	26	24	23	26	2.00
44296425--44296500	35	2.2	35	85	0	98	28	23	22	25	1.99
44298669--44298787	44	2.7	44	93	2	186	22	27	10	39	1.86
44307834--44307884	3	16.7	3	79	4	57	39	3	0	56	1.18
44307840--44307884	12	3.7	12	87	3	63	40	2	0	57	1.11
44308222--44308692	155	3.0	158	86	7	685	45	4	9	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44312433--44312535	33	3.1	33	80	8	111	26	14	44	14	1.84
44315478--44315592	60	1.9	60	89	0	176	50	13	1	33	1.52
44315661--44315686	7	3.7	7	100	0	52	61	0	0	38	0.96
44315775--44315830	3	19.7	3	79	17	57	0	28	0	71	0.86
44315770--44315839	19	3.8	18	78	21	74	0	30	0	70	0.88
44322549--44322617	33	2.1	33	91	0	111	26	28	8	36	1.86
44323112--44323160	24	2.0	24	100	0	98	20	28	4	46	1.68
44323564--44323595	2	16.0	2	100	0	64	0	50	0	50	1.00
44334481--44334538	30	1.9	30	96	0	107	24	13	22	39	1.90
44336592--44336623	15	2.1	15	100	0	64	28	12	31	28	1.93
44347223--44347271	21	2.3	21	85	3	62	44	28	10	16	1.80
44347234--44347273	21	1.9	21	94	0	71	42	30	12	15	1.83
44348338--44348368	11	2.8	11	90	0	53	67	0	0	32	0.91
44350952--44351098	30	5.0	29	85	5	154	36	17	6	40	1.74
44350951--44351078	59	2.1	61	81	8	156	38	16	4	40	1.69
44352080--44352138	18	3.2	17	76	21	57	28	15	10	45	1.78
44352104--44352136	16	2.0	17	94	5	59	24	18	12	45	1.83
44352293--44352562	18	15.4	17	76	10	215	28	14	11	45	1.80
44352293--44352562	35	7.7	35	80	6	305	28	14	11	45	1.80
44353461--44353504	17	2.7	17	86	10	65	52	2	0	45	1.13
44353468--44353511	17	2.5	17	85	14	63	54	0	0	45	0.99
44355767--44356149	122	3.0	125	89	6	515	40	14	16	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44366999--44367051	25	2.1	25	96	0	97	28	13	22	35	1.92
44384419--44384445	7	3.9	7	100	0	54	29	11	14	44	1.80
44389857--44389985	10	13.4	10	71	18	71	59	2	3	34	1.26
44392098--44392176	37	2.1	37	100	0	158	35	7	17	39	1.78
44393024--44393056	16	2.0	17	88	5	50	51	0	9	39	1.34
44393228--44393275	3	16.0	3	91	0	78	64	2	2	31	1.16
44399517--44399617	39	2.6	39	74	14	100	62	1	2	32	1.21
44399590--44399627	20	1.9	20	89	10	60	65	5	2	26	1.27
44399566--44399627	30	2.2	28	82	8	72	66	3	3	27	1.23
44399883--44399956	28	2.6	29	83	12	91	35	1	1	62	1.12
44403282--44403387	54	2.0	54	100	0	212	33	19	17	28	1.95
44408287--44408504	43	5.1	43	80	6	201	31	28	16	24	1.96
44408287--44408504	86	2.5	86	78	4	242	31	28	16	24	1.96
44408521--44408573	20	2.7	19	78	16	56	43	1	0	54	1.11
44409319--44409420	45	2.3	45	94	0	186	46	20	10	22	1.82
44417857--44418492	45	14.2	45	89	1	891	28	17	25	28	1.98
44426939--44426969	3	10.3	3	100	0	62	67	0	0	32	0.91
44430635--44430703	26	2.6	27	72	4	70	17	26	21	34	1.95
44438681--44438733	23	2.2	25	83	6	65	22	26	18	32	1.97
44439928--44440120	42	4.6	42	95	0	325	16	29	34	20	1.94
44440082--44440219	73	1.9	73	80	8	165	25	27	23	23	2.00
44440262--44440286	13	1.9	13	100	0	50	24	48	20	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44446703--44446733	16	2.0	15	93	6	53	58	0	0	41	0.98
44453020--44453209	96	2.0	97	91	1	310	35	8	19	36	1.82
44455573--44455606	18	1.9	18	88	5	52	35	2	5	55	1.39
44455574--44455663	44	2.0	44	89	0	135	35	8	5	50	1.57
44463688--44463840	12	12.8	12	65	20	54	54	2	2	39	1.28
44463640--44463789	17	8.7	18	67	25	60	50	4	2	42	1.37
44465309--44465357	20	2.4	21	83	10	66	26	14	18	40	1.89
44465857--44465894	19	2.0	19	100	0	76	31	5	21	42	1.75
44473036--44473231	101	1.9	101	96	0	365	40	8	17	33	1.80
44476299--44476329	15	2.1	15	100	0	62	41	6	12	38	1.69
44484031--44484162	22	6.0	22	66	13	65	12	24	21	42	1.86
44487701--44487814	39	2.9	39	86	2	149	37	31	14	16	1.88
44492718--44492974	45	5.8	44	79	5	241	21	24	22	30	1.99
44492718--44493003	90	3.2	90	85	1	353	22	24	22	31	1.99
44494240--44494318	30	2.6	30	91	2	122	37	5	10	46	1.60
44494606--44494640	18	1.9	18	94	0	61	45	2	2	48	1.32
44495994--44496053	24	2.3	27	80	8	72	28	16	3	51	1.60
44496563--44496594	4	8.5	4	86	13	50	50	0	0	50	1.00
44499509--44499625	56	2.1	56	98	1	227	31	20	18	29	1.97
44504887--44504944	23	2.5	24	86	11	84	18	10	29	41	1.84
44512091--44512131	21	2.0	20	90	4	64	14	9	0	75	1.04
44513196--44513260	5	12.6	5	75	18	62	76	0	3	20	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44513185--44513261	15	4.8	15	80	9	82	75	0	3	20	0.96
44517520--44517772	27	9.4	27	82	4	260	41	18	15	23	1.89
44517516--44517772	54	4.8	54	81	6	306	41	18	15	24	1.89
44517550--44517801	81	3.1	78	73	8	218	40	18	15	25	1.90
44518147--44518208	28	2.3	27	83	5	79	20	22	25	30	1.98
44530578--44530623	21	2.2	21	88	3	67	67	0	0	32	0.91
44532549--44532596	19	2.3	21	82	10	55	25	8	2	64	1.32
44537141--44537202	26	2.4	27	78	10	76	35	3	32	29	1.73
44538481--44538558	10	7.6	10	69	9	50	39	5	1	53	1.31
44538479--44538550	21	3.6	20	76	9	67	43	5	0	51	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173