genome.fa.s17.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  157  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47176746--47176862	36	3.3	35	80	11	107	46	11	10	32	1.73
47177142--47177187	16	2.8	16	80	3	56	67	0	6	26	1.15
47177329--47177366	7	5.3	7	93	6	67	0	18	0	81	0.69
47177329--47177405	15	5.1	15	79	14	79	0	22	0	77	0.76
47177331--47177405	8	8.8	8	72	22	55	0	21	0	78	0.75
47177537--47177580	5	8.8	5	92	7	72	0	0	15	84	0.63
47177642--47177689	9	5.1	9	85	9	69	8	4	0	87	0.66
47177647--47177700	22	2.3	23	87	6	74	5	9	0	85	0.75
47177642--47177697	20	2.9	19	87	10	78	7	7	0	85	0.73
47177646--47177703	7	8.3	7	81	7	55	5	10	0	84	0.77
47177696--47177752	3	19.0	3	100	0	114	0	33	0	66	0.92
47178132--47178231	29	3.4	29	79	15	109	40	7	23	30	1.81
47178409--47179490	81	13.3	81	90	4	1668	34	19	16	28	1.94
47178409--47179490	410	2.7	406	91	4	1720	34	19	16	28	1.94
47186516--47186586	37	1.9	37	88	11	110	47	5	9	36	1.60
47186560--47186611	19	3.0	16	71	17	50	44	11	13	30	1.79
47187266--47187309	16	2.8	15	90	10	70	0	2	13	84	0.73
47187276--47187308	6	5.8	6	92	7	52	0	0	15	84	0.61
47187372--47187416	23	2.0	23	86	0	63	4	13	0	82	0.82
47187406--47187438	3	11.0	3	100	0	66	0	33	0	66	0.92
47187797--47187904	29	3.8	28	82	13	132	43	5	19	31	1.74
47192681--47192720	20	2.1	19	86	13	55	52	2	0	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47192671--47192736	22	3.0	22	74	17	66	53	1	0	45	1.09
47203771--47203803	10	3.3	10	91	8	50	60	6	0	33	1.21
47204298--47204368	20	3.8	19	73	15	60	32	1	1	64	1.11
47210578--47210634	29	2.0	29	86	6	80	73	1	17	7	1.14
47210586--47210644	29	2.0	29	83	6	75	74	1	18	5	1.09
47211095--47211133	5	7.8	5	94	0	69	20	0	17	61	1.34
47211339--47211385	24	2.0	24	84	16	62	34	0	14	51	1.43
47213581--47213607	7	3.9	7	100	0	54	59	11	0	29	1.32
47217942--47217988	22	2.1	22	84	7	60	68	6	6	19	1.34
47219577--47219710	72	1.9	72	88	0	205	30	17	22	29	1.96
47236156--47236184	3	9.7	3	100	0	58	0	34	0	65	0.93
47237714--47237767	23	2.3	23	78	12	74	40	0	9	50	1.35
47237723--47237763	13	3.4	13	77	19	52	36	0	12	51	1.40
47259949--47259990	21	2.0	21	81	9	50	9	23	0	66	1.21
47261085--47261128	24	1.9	24	90	9	74	36	0	2	61	1.09
47261225--47261261	9	4.1	9	100	0	74	56	10	0	32	1.34
47261334--47261375	16	2.6	16	92	0	66	42	7	2	47	1.43
47261229--47261367	66	2.2	65	81	14	184	48	8	2	40	1.49
47264000--47264151	13	11.2	13	71	15	67	36	4	5	53	1.44
47264066--47264142	13	5.8	13	79	11	75	38	2	2	55	1.27
47264043--47264151	40	2.7	40	80	9	123	37	3	3	55	1.35
47264070--47264177	13	8.5	13	77	13	57	39	4	3	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47266792--47266883	30	3.1	30	93	0	157	38	7	22	31	1.82
47272491--47272534	5	9.2	5	81	18	58	40	0	0	59	0.98
47272492--47272534	19	2.3	19	92	8	70	41	0	0	58	0.98
47272977--47273042	35	1.9	34	90	6	107	33	7	13	45	1.72
47273936--47274035	41	2.6	37	73	6	92	22	20	30	28	1.98
47276906--47276972	32	2.1	32	94	0	116	25	26	7	40	1.82
47277342--47277400	21	2.8	21	65	10	57	30	16	6	45	1.74
47283203--47283235	7	4.6	7	92	7	57	66	3	0	30	1.06
47288677--47288735	30	2.0	30	90	6	93	15	42	28	13	1.85
47295257--47295290	15	2.3	15	90	5	52	70	0	0	29	0.87
47306870--47307391	27	19.3	27	77	4	410	20	16	21	41	1.90
47306881--47307398	81	6.4	81	77	4	515	20	16	21	41	1.90
47320556--47320595	2	20.0	2	94	0	71	50	0	47	2	1.14
47327796--47328286	27	18.2	27	85	1	581	20	17	20	41	1.91
47345574--47345717	41	3.5	41	90	3	229	27	19	28	24	1.98
47346668--47347067	197	2.0	196	97	0	746	39	5	14	41	1.67
47350639--47350664	13	2.0	13	100	0	52	53	7	7	30	1.57
47352353--47352381	2	14.5	2	100	0	58	51	0	48	0	1.00
47352868--47352900	16	2.0	17	88	5	50	9	12	12	66	1.44
47353889--47353945	30	1.9	29	89	3	87	57	1	1	38	1.19
47353970--47354004	16	2.2	16	89	0	52	62	0	8	28	1.24
47355954--47356497	50	10.9	50	72	3	382	22	21	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47355847--47356553	100	7.1	100	86	2	913	23	21	23	32	1.98
47355848--47356553	299	2.4	296	85	2	950	23	21	23	32	1.98
47357803--47357847	16	3.0	15	90	6	65	13	13	0	73	1.10
47357812--47357848	8	4.6	8	87	12	58	10	10	0	78	0.97
47362679--47362729	23	2.3	22	80	12	59	70	0	3	25	1.04
47362813--47362887	27	2.7	27	77	6	71	54	4	6	34	1.45
47362868--47362902	16	2.2	16	89	0	52	62	0	8	28	1.24
47374687--47374721	17	2.0	18	88	5	54	11	45	28	14	1.79
47377315--47377362	25	2.0	25	87	4	71	16	25	18	39	1.91
47389313--47389346	18	1.9	17	88	5	50	26	5	2	64	1.30
47390416--47390702	142	2.0	143	93	2	495	34	21	9	33	1.87
47391253--47391325	34	2.1	35	97	2	139	10	23	15	50	1.75
47395189--47395232	23	1.9	23	90	0	70	29	13	9	47	1.74
47398955--47399003	21	2.3	22	85	3	64	73	8	0	18	1.07
47413812--47414216	44	9.2	44	78	4	260	35	16	19	28	1.94
47413853--47414222	88	4.2	88	78	1	348	34	16	19	28	1.94
47413853--47414199	132	2.6	132	81	3	322	35	16	19	28	1.94
47415771--47415795	12	2.1	12	100	0	50	24	0	0	76	0.80
47415982--47416039	28	2.1	28	96	0	107	20	15	6	56	1.62
47418382--47418415	16	2.1	17	88	5	52	26	0	0	73	0.83
47421355--47421469	46	2.5	47	75	12	114	23	21	20	33	1.97
47421583--47421626	23	1.9	23	90	9	72	27	11	13	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47424063--47424088	13	2.0	13	100	0	52	38	23	7	30	1.83
47425699--47425740	14	3.0	14	76	13	50	40	9	9	40	1.70
47425709--47425775	34	1.9	35	87	3	100	34	8	10	46	1.70
47430176--47430307	60	2.2	59	87	1	183	41	9	25	22	1.85
47437188--47437234	17	2.8	17	79	20	62	36	2	6	55	1.37
47437724--47437856	61	2.2	61	86	5	189	29	15	9	45	1.77
47438191--47438232	16	2.6	16	92	0	66	42	7	2	47	1.43
47438206--47438268	23	2.8	23	82	2	74	49	1	1	47	1.20
47438984--47439036	21	2.5	22	84	12	74	52	0	1	45	1.11
47438983--47439039	11	5.3	11	79	12	64	50	0	1	47	1.11
47439012--47439127	42	2.9	40	88	7	173	62	0	3	34	1.12
47439530--47439572	22	2.0	22	85	0	59	65	6	2	25	1.30
47440796--47440843	21	2.1	22	85	11	62	8	33	0	58	1.28
47445393--47445425	15	2.3	15	89	5	50	39	3	0	57	1.14
47451480--47451513	14	2.4	14	90	0	50	29	0	8	61	1.26
47458177--47458239	31	2.0	31	87	0	90	38	14	15	31	1.88
47458470--47458510	20	2.0	21	85	4	57	63	4	2	29	1.28
47465893--47465953	31	2.0	31	86	0	86	24	16	13	45	1.83
47473238--47473286	25	1.9	26	83	4	64	42	2	0	55	1.11
47473303--47473346	22	2.0	23	86	4	63	40	2	2	54	1.25
47474217--47474267	25	2.0	25	81	7	59	39	29	11	19	1.87
47476966--47477011	22	2.1	22	100	0	92	56	17	0	26	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47477196--47477230	18	1.9	18	88	0	52	31	14	25	28	1.95
47479328--47479354	3	9.0	3	100	0	54	33	33	0	33	1.58
47483626--47483688	30	2.1	31	85	8	87	53	1	0	44	1.10
47483686--47483733	23	2.1	24	88	7	73	39	6	0	54	1.26
47484251--47484309	29	2.0	29	80	9	66	52	15	5	27	1.63
47499256--47499312	30	1.9	30	82	13	73	47	3	0	49	1.18
47499490--47499539	26	1.9	26	87	0	73	40	20	0	40	1.52
47502688--47502750	27	2.2	29	80	16	85	46	11	22	20	1.82
47502698--47502752	27	2.0	27	96	0	101	40	12	25	21	1.89
47503773--47503976	106	1.9	106	90	0	327	32	17	18	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173