genome.fa.s17.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  126  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38578310--38578583	69	4.0	69	75	13	217	35	5	4	54	1.44
38578542--38578579	17	2.2	18	85	4	51	36	0	0	63	0.95
38579411--38579440	11	2.7	11	94	0	51	40	10	6	43	1.64
38588264--38588306	18	2.4	18	88	0	59	44	44	2	9	1.49
38588410--38588494	9	9.4	9	79	5	91	27	10	21	41	1.85
38591109--38591144	15	2.5	14	86	8	54	44	8	0	47	1.33
38592350--38592403	19	2.7	19	74	5	54	18	7	7	66	1.40
38595442--38595527	45	1.9	45	90	0	136	40	13	20	24	1.89
38595680--38595771	27	3.4	27	77	5	114	33	10	28	27	1.90
38603261--38603361	27	3.7	27	85	0	139	32	16	29	20	1.95
38603261--38603373	27	4.2	28	75	10	110	31	17	30	20	1.96
38604539--38604587	11	4.3	12	82	14	52	69	14	10	6	1.35
38606512--38606540	9	3.0	10	90	10	51	17	20	0	62	1.33
38608280--38608400	31	3.9	31	83	0	152	39	6	19	33	1.78
38608285--38608405	62	2.0	62	86	0	170	38	5	21	33	1.77
38610935--38610971	9	4.0	9	86	6	56	54	13	0	32	1.40
38612777--38612821	24	1.9	23	90	4	72	66	0	11	22	1.22
38615691--38615747	19	2.8	20	76	20	55	42	15	1	40	1.58
38617292--38617484	51	3.8	50	78	4	210	31	28	17	22	1.96
38617299--38617483	101	1.8	101	88	5	284	32	28	16	22	1.96
38619798--38619839	21	2.1	20	86	8	59	40	23	4	30	1.75
38634375--38634421	21	2.2	21	77	7	51	44	0	2	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38634443--38634479	18	2.2	18	90	9	60	48	0	0	51	1.00
38634444--38634500	20	3.1	18	83	14	64	45	1	0	52	1.11
38635374--38635414	17	2.4	17	88	12	57	63	0	2	34	1.08
38638996--38639126	65	2.0	65	100	0	262	27	22	7	41	1.81
38641209--38641291	41	2.0	40	88	6	123	25	1	28	44	1.62
38641362--38641442	34	2.5	32	80	7	85	46	0	9	43	1.37
38641503--38641557	16	3.4	16	87	0	74	38	7	25	29	1.83
38641705--38641733	6	4.8	6	100	0	58	17	0	13	68	1.20
38644226--38644460	126	1.9	126	83	3	312	42	12	16	28	1.85
38647517--38647573	25	2.3	23	78	18	62	52	5	0	42	1.24
38647800--38647853	24	2.2	24	90	0	81	20	22	29	27	1.98
38648022--38648059	18	2.1	18	90	0	58	42	10	23	23	1.85
38649809--38649869	32	1.9	32	83	6	79	39	1	27	31	1.66
38658545--38658580	18	1.9	19	88	5	56	80	11	0	8	0.90
38658643--38658673	7	4.6	7	92	8	55	87	0	12	0	0.55
38658613--38658673	6	9.7	6	84	10	52	78	0	18	3	0.88
38658642--38658673	13	2.3	15	84	15	50	87	0	12	0	0.54
38658613--38658674	25	2.4	26	81	10	74	77	0	19	3	0.90
38659532--38659572	7	6.0	7	85	5	57	65	2	17	14	1.37
38660615--38660664	21	2.4	21	86	0	64	38	18	42	2	1.61
38661011--38661276	43	6.2	43	85	0	327	27	18	29	25	1.98
38670451--38670491	21	2.0	21	85	0	55	19	31	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38675434--38675469	17	2.1	17	89	5	54	66	0	11	22	1.22
38678158--38678209	19	2.8	18	83	13	61	53	3	0	42	1.19
38683528--38683616	41	2.2	41	87	0	124	35	29	19	15	1.93
38685073--38685106	3	11.3	3	100	0	68	0	0	32	67	0.91
38707697--38707749	25	2.3	23	83	9	63	20	11	13	54	1.69
38708398--38708428	16	1.9	16	100	0	62	32	6	38	22	1.80
38708396--38708441	16	2.9	16	86	0	56	36	6	34	21	1.80
38708421--38708510	45	2.0	44	82	6	110	33	5	27	33	1.80
38708664--38708695	15	2.1	15	94	0	55	50	0	0	50	1.00
38708653--38709188	120	4.5	120	95	1	916	49	5	2	42	1.39
38708914--38708948	18	2.0	17	88	5	52	54	0	0	45	0.99
38709034--38709068	18	2.0	17	88	5	52	54	0	0	45	0.99
38712628--38712657	15	2.0	15	100	0	60	20	13	13	53	1.72
38713185--38713254	29	2.5	28	75	9	70	67	4	1	27	1.18
38716993--38717026	14	2.4	14	100	0	68	38	0	8	52	1.33
38722975--38723019	19	2.4	19	88	0	63	26	13	20	40	1.89
38722984--38723022	19	2.1	19	95	0	69	25	17	12	43	1.85
38747149--38747199	26	2.0	26	96	0	93	11	23	35	29	1.90
38747071--38747293	103	2.2	104	92	2	369	17	18	31	31	1.95
38747212--38747363	71	2.1	72	92	1	252	23	17	29	30	1.97
38754460--38754683	104	2.2	104	93	1	378	17	19	31	31	1.95
38754713--38754764	26	2.0	26	92	0	86	15	21	34	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38754602--38754752	72	2.1	72	91	2	243	23	16	29	30	1.96
38760107--38760284	88	2.0	88	92	2	295	27	26	9	36	1.87
38764495--38764576	10	7.6	10	80	15	74	53	9	1	35	1.42
38767946--38767989	23	1.9	22	82	17	54	36	25	0	38	1.56
38768088--38768273	51	3.7	50	81	4	230	32	27	15	24	1.95
38768084--38768270	101	1.8	101	87	3	277	32	27	15	24	1.95
38770690--38770718	13	2.3	13	94	5	51	10	48	0	41	1.37
38773954--38774012	26	2.3	26	93	0	100	42	13	13	30	1.83
38773954--38774026	26	2.8	26	87	0	83	42	10	16	30	1.82
38781747--38781881	40	3.4	39	74	7	121	32	23	17	25	1.97
38784268--38784343	26	2.9	26	80	3	82	39	11	15	32	1.84
38784736--38784825	42	2.1	42	93	0	153	38	8	11	41	1.72
38784746--38784831	42	2.0	42	100	0	172	36	9	11	43	1.73
38789163--38789205	22	2.0	22	95	0	77	9	20	27	41	1.83
38789364--38789465	43	2.4	43	81	1	116	22	22	26	28	1.99
38789469--38789737	42	6.3	42	73	12	194	30	30	16	23	1.96
38789448--38789718	85	3.2	85	86	5	361	26	29	16	26	1.97
38789387--38789737	43	8.2	42	72	10	223	27	29	18	24	1.98
38790058--38790150	21	4.4	21	86	0	114	4	44	15	36	1.66
38790058--38790112	10	5.3	10	72	23	51	3	47	10	38	1.56
38790141--38790287	66	2.2	66	85	4	190	13	27	17	40	1.88
38795715--38795758	16	2.8	16	85	0	61	36	0	15	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38795726--38795846	25	4.6	25	71	13	107	37	1	17	43	1.59
38795783--38795850	9	7.8	9	72	6	59	38	1	17	42	1.59
38795887--38796165	34	9.6	34	61	32	134	42	1	10	45	1.49
38795920--38795964	22	2.0	22	95	0	81	42	0	11	46	1.39
38795887--38796409	56	9.2	56	95	2	859	40	2	11	46	1.52
38795976--38796035	22	2.6	22	84	5	75	40	1	11	46	1.50
38796031--38796075	22	2.0	22	95	0	81	42	0	11	46	1.39
38796087--38796131	22	2.0	22	95	0	81	42	0	11	46	1.39
38796345--38796397	18	3.2	18	65	25	53	39	3	7	49	1.49
38796137--38796411	31	9.4	32	71	18	206	38	2	11	47	1.53
38799261--38799331	35	2.0	35	86	8	99	35	0	5	59	1.21
38799475--38799534	15	3.9	16	72	10	54	33	46	0	20	1.51
38799644--38799741	7	12.9	8	67	20	50	35	45	1	17	1.55
38799410--38799752	169	2.0	169	95	0	623	41	30	2	25	1.68
38799666--38799740	7	10.0	7	71	13	51	33	46	1	18	1.58
38801050--38801087	15	2.5	15	86	0	58	36	42	0	21	1.53
38801562--38801881	41	7.8	41	80	2	268	33	24	25	16	1.96
38801944--38802036	40	2.3	40	78	5	100	16	30	23	30	1.96
38814061--38814105	22	2.0	23	86	4	65	55	0	2	42	1.12
38814153--38814189	17	2.1	18	85	14	51	59	0	0	40	0.97
38815357--38815458	36	2.8	36	73	16	102	56	0	0	41	1.12
38815370--38815434	19	3.4	18	72	15	51	67	1	1	29	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38815357--38815456	38	2.7	36	76	11	105	57	1	1	41	1.12
38822704--38822734	16	2.0	15	93	6	53	19	22	32	25	1.97
38823870--38823911	13	3.1	14	83	10	52	50	0	0	50	1.00
38823868--38823909	14	2.9	15	79	17	52	52	0	0	47	1.00
38830850--38830891	21	2.0	21	95	0	75	26	38	26	9	1.87
38831468--38831519	26	2.0	26	100	0	104	26	26	7	38	1.83
38836104--38836153	26	1.9	26	87	4	66	54	0	0	46	1.00
38836277--38836307	16	1.9	16	93	0	53	58	9	9	22	1.59
38839492--38839698	91	2.3	90	88	3	290	45	3	3	46	1.39
38839614--38839673	28	2.3	25	82	8	66	43	0	3	53	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173