genome.fa.s17.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  158  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47504378--47504413	18	1.9	19	88	5	56	66	2	5	25	1.27
47512507--47512559	16	3.3	16	94	0	88	37	3	32	26	1.74
47512541--47512633	44	2.1	46	87	4	136	30	4	27	37	1.76
47512792--47512837	18	2.6	17	93	6	74	56	0	2	41	1.11
47512807--47512990	41	4.6	41	65	22	95	52	4	2	40	1.33
47512826--47513008	59	3.0	61	70	12	189	51	4	2	42	1.34
47520002--47520038	17	2.2	17	86	13	51	67	0	0	32	0.91
47520002--47520032	15	2.0	16	93	6	55	64	0	0	35	0.94
47520121--47520170	23	2.1	24	85	10	68	46	2	2	50	1.24
47535012--47535236	84	3.0	69	78	18	254	34	7	11	47	1.67
47535080--47535271	82	2.3	84	91	1	307	35	6	9	47	1.63
47543630--47543711	7	11.6	7	96	2	119	19	0	0	80	0.71
47543719--47543756	20	1.9	20	88	0	58	36	0	0	63	0.95
47544309--47544356	24	2.0	24	91	0	78	37	4	4	54	1.39
47544599--47544649	19	2.7	19	74	14	52	41	0	0	58	0.98
47544600--47544663	29	2.2	30	81	13	80	39	0	0	60	0.97
47545612--47545642	3	10.0	3	93	6	53	67	0	0	32	0.91
47546038--47546077	20	2.0	20	90	0	62	30	10	10	50	1.69
47546023--47546089	34	1.9	35	87	3	100	35	8	8	46	1.67
47555351--47555460	9	11.7	9	67	16	62	28	4	0	67	1.10
47555326--47555420	47	2.0	48	82	10	115	29	5	1	64	1.22
47555351--47555405	20	2.8	20	78	15	60	29	5	0	65	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47555349--47555449	29	3.6	28	77	13	84	29	4	0	65	1.14
47556104--47556143	16	2.5	16	91	0	62	35	32	5	27	1.79
47556840--47556879	9	4.2	9	81	12	53	17	12	30	40	1.86
47556837--47556881	20	2.2	20	96	0	81	17	11	26	44	1.82
47556936--47556960	12	2.1	12	100	0	50	16	24	36	24	1.94
47557013--47557305	85	3.4	84	81	9	319	33	10	13	41	1.80
47558034--47558097	30	2.2	29	88	8	94	31	3	0	65	1.08
47558038--47558104	30	2.2	31	83	2	91	28	2	0	68	1.04
47558608--47558667	21	2.8	22	81	18	65	45	0	0	55	0.99
47558608--47558675	24	3.0	23	77	14	63	42	0	0	57	0.98
47560886--47560937	27	1.9	27	84	0	68	51	11	9	26	1.68
47567295--47567398	52	2.0	51	84	3	136	36	3	16	43	1.66
47568313--47568386	37	2.0	37	94	0	130	39	17	25	17	1.91
47573494--47573519	7	3.7	7	100	0	52	61	0	0	38	0.96
47580654--47580686	16	2.1	16	94	0	57	33	3	0	63	1.10
47581429--47581515	44	2.0	44	95	0	156	27	11	18	42	1.85
47586080--47586253	44	3.7	44	73	15	159	32	12	11	43	1.79
47586026--47586258	99	2.3	100	88	2	344	32	12	12	42	1.80
47586181--47586267	44	2.0	44	86	0	120	33	13	13	39	1.85
47593963--47594338	186	2.0	186	97	0	716	21	23	15	39	1.91
47597787--47597842	26	2.0	28	86	10	80	33	16	12	37	1.86
47611700--47611772	30	2.4	31	81	9	87	42	5	10	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47621003--47621027	2	12.5	2	100	0	50	0	48	0	52	1.00
47622872--47622938	25	2.8	24	81	4	89	41	1	0	56	1.08
47622920--47622950	11	2.8	11	95	0	53	58	0	0	41	0.98
47628593--47628632	13	3.5	12	80	19	50	50	0	0	50	1.00
47631162--47631187	2	13.0	2	100	0	52	50	0	0	50	1.00
47631648--47631718	27	2.7	27	80	10	76	63	0	1	35	1.03
47634942--47634977	16	2.2	16	100	0	72	38	16	0	44	1.48
47635702--47635742	21	1.9	22	90	5	66	34	0	19	46	1.50
47636405--47636476	25	2.8	25	93	2	117	23	27	18	30	1.97
47641583--47641659	25	3.2	25	83	5	79	19	27	15	37	1.92
47643259--47643293	18	1.9	18	88	11	54	37	5	0	57	1.23
47643635--47643707	27	2.6	28	76	19	71	73	2	2	20	1.08
47643633--47643706	20	3.9	19	73	15	64	74	2	2	20	1.07
47648392--47648432	21	2.0	21	90	0	64	21	9	4	63	1.44
47649321--47649351	14	2.1	15	94	5	55	22	12	3	61	1.46
47651995--47652025	15	2.1	15	93	0	53	41	0	3	54	1.16
47652217--47652300	29	2.9	28	77	10	80	71	4	22	1	1.12
47652626--47652670	23	1.9	24	86	13	67	55	2	22	20	1.54
47652921--47652965	24	1.9	23	82	13	56	51	0	15	33	1.44
47655448--47655696	50	4.8	50	85	4	284	20	29	24	26	1.99
47655447--47655696	100	2.4	104	88	6	357	20	29	24	26	1.99
47655791--47655822	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47656034--47656091	30	1.9	30	89	0	89	31	24	3	41	1.71
47663039--47663287	50	4.8	50	85	4	284	20	29	24	26	1.99
47663038--47663287	100	2.4	104	88	6	357	20	29	24	26	1.99
47663382--47663413	13	2.5	13	94	0	55	56	12	0	31	1.37
47663625--47663682	30	1.9	30	89	0	89	31	24	3	41	1.71
47667197--47667239	23	2.0	23	90	9	72	65	4	20	9	1.40
47667568--47667631	30	2.2	29	88	8	94	53	4	4	37	1.43
47667577--47667635	29	2.0	30	96	3	111	54	5	3	37	1.39
47673675--47673718	19	2.3	19	84	7	54	59	0	4	36	1.18
47674502--47674539	21	2.0	20	85	15	53	36	0	7	55	1.29
47676551--47676620	31	2.2	32	87	7	108	51	8	14	25	1.70
47687681--47687755	31	2.4	32	93	2	125	28	10	16	45	1.80
47701283--47701333	26	2.0	26	96	0	93	11	23	35	29	1.90
47701205--47701470	103	2.6	103	93	0	451	18	20	30	30	1.96
47708688--47708954	104	2.6	104	92	2	455	18	20	30	29	1.97
47710365--47710410	19	2.5	19	80	16	60	30	2	0	67	1.03
47711791--47711825	6	5.7	6	96	3	61	54	0	45	0	0.99
47714986--47715039	21	2.5	21	81	3	72	61	0	0	38	0.96
47715921--47715946	3	8.7	3	100	0	52	65	0	0	34	0.93
47722298--47722328	16	1.9	16	93	0	53	48	3	0	48	1.17
47731517--47731550	17	2.0	17	100	0	68	11	17	17	52	1.73
47733810--47733838	4	7.2	4	100	0	58	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47736832--47736881	3	16.7	3	100	0	100	32	0	0	68	0.90
47736986--47737019	15	2.1	17	89	10	54	47	0	0	52	1.00
47737868--47737919	18	3.0	18	81	10	56	63	3	0	32	1.12
47742419--47742460	17	2.3	18	80	12	50	64	2	0	33	1.07
47745883--47745965	32	2.6	32	80	0	112	26	24	34	14	1.94
47745949--47745993	18	2.6	18	92	3	74	20	31	35	13	1.91
47749567--47749634	21	3.2	21	76	0	64	41	14	25	19	1.89
47749574--47749685	42	2.7	42	79	5	120	42	16	22	18	1.88
47758650--47758731	22	3.8	21	74	4	65	56	19	10	13	1.67
47760004--47760138	67	2.0	67	100	0	270	35	17	7	40	1.77
47763038--47763071	18	1.9	17	88	5	50	64	2	0	32	1.08
47763108--47763196	41	2.2	43	86	8	123	49	1	8	40	1.42
47764262--47764344	40	2.0	42	88	6	125	59	2	16	21	1.49
47765308--47765388	22	3.7	22	86	0	90	34	20	27	17	1.95
47769362--47769418	28	2.0	28	100	0	114	38	14	17	29	1.89
47770149--47770222	31	2.5	29	82	4	85	27	13	14	44	1.83
47781295--47781332	13	3.0	13	84	7	51	42	0	0	57	0.98
47781483--47781575	30	3.1	30	74	18	77	49	1	2	47	1.20
47788284--47788314	15	2.1	15	100	0	62	58	0	6	35	1.24
47788284--47788321	15	2.6	14	88	12	51	57	0	7	34	1.28
47789748--47789789	9	4.8	9	83	16	52	64	0	4	30	1.14
47790044--47790075	11	2.9	11	95	0	55	18	31	0	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47790042--47790094	22	2.4	22	87	6	72	20	30	3	45	1.69
47791270--47791295	7	3.7	7	100	0	52	26	0	15	57	1.38
47791804--47791870	30	2.2	30	81	0	80	34	41	13	10	1.79
47791949--47791990	18	2.3	18	87	0	57	19	28	7	45	1.76
47792253--47792292	21	1.9	21	84	0	53	32	37	17	12	1.87
47797271--47797325	24	2.3	22	77	17	56	9	9	7	74	1.22
47797306--47797335	15	1.9	16	93	6	53	20	10	3	66	1.35
47797368--47797436	23	3.0	22	75	14	68	43	0	1	55	1.08
47797399--47797443	23	2.1	21	84	12	56	51	0	0	48	1.00
47797587--47797636	22	2.2	22	85	3	64	52	4	0	44	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173