genome.fa.s17.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  136  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41232104--41232201	33	2.9	33	84	7	108	30	10	22	36	1.87
41245752--41245948	41	4.8	41	92	5	317	28	20	22	27	1.99
41246163--41246226	32	2.0	31	90	3	101	28	9	23	39	1.86
41253424--41253617	81	2.4	81	94	2	338	29	20	22	27	1.99
41253424--41253617	40	4.8	41	94	3	340	29	20	22	27	1.99
41253831--41253893	33	1.9	32	90	3	99	25	9	25	39	1.86
41253837--41253910	33	2.3	33	80	2	87	28	8	25	37	1.84
41257324--41257366	21	2.1	20	95	4	77	51	4	6	37	1.50
41258674--41258731	30	1.9	30	92	0	98	29	5	15	50	1.66
41258857--41258887	11	2.8	11	90	0	53	67	0	0	32	0.91
41269038--41269113	36	2.1	35	84	13	102	52	5	1	40	1.32
41275401--41275430	3	10.0	3	92	0	51	63	0	3	33	1.11
41277112--41277210	44	2.2	44	80	7	112	31	21	18	29	1.97
41277368--41277980	128	4.8	128	89	0	895	24	23	19	31	1.98
41279224--41279261	7	5.4	7	81	12	51	13	15	0	71	1.16
41280113--41280173	32	1.9	32	86	6	88	13	8	9	68	1.38
41285090--41285130	21	2.0	21	85	0	55	65	4	4	24	1.32
41287712--41288117	208	2.0	208	92	2	672	40	16	8	34	1.79
41292405--41292576	50	3.6	44	78	16	166	29	23	15	31	1.96
41292405--41292569	51	3.3	49	91	2	240	28	24	15	32	1.95
41300111--41300144	15	2.3	15	100	0	68	55	8	5	29	1.54
41308003--41308205	50	4.1	50	92	0	316	20	33	21	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41317953--41317977	10	2.5	10	100	0	50	12	0	8	80	0.92
41330873--41330950	32	2.5	31	89	4	113	42	1	19	37	1.59
41332828--41333257	212	2.0	211	94	1	745	40	16	9	33	1.81
41340197--41340242	19	2.4	19	96	3	83	80	8	0	10	0.91
41340212--41340306	28	3.4	28	75	2	82	71	8	8	11	1.31
41341977--41342113	43	3.2	43	64	17	111	28	28	22	20	1.99
41341921--41342422	87	5.8	87	94	0	842	30	23	22	23	1.99
41342748--41342831	44	1.9	44	87	0	123	33	21	19	26	1.97
41342713--41343178	142	3.3	142	91	0	716	33	18	20	27	1.96
41343245--41343693	50	9.0	50	71	7	311	31	23	20	24	1.98
41343233--41343702	100	4.7	100	88	2	595	31	24	20	24	1.98
41344695--41344723	15	1.9	15	100	0	58	13	0	0	86	0.58
41349336--41349369	16	2.1	16	88	5	50	8	0	14	76	1.01
41365257--41365329	37	1.9	37	84	13	96	31	21	2	43	1.67
41365405--41365498	45	2.1	45	87	0	134	29	23	21	25	1.99
41389451--41389493	8	5.4	8	100	0	86	25	0	0	74	0.82
41393591--41393648	29	2.0	29	100	0	116	37	13	6	41	1.72
41398076--41398109	17	2.0	17	94	0	59	58	14	11	14	1.63
41406522--41406615	34	2.8	33	79	6	80	32	23	18	25	1.97
41407066--41407334	27	10.0	27	81	2	272	20	16	20	42	1.89
41407064--41407334	81	3.3	81	83	4	341	20	16	20	42	1.89
41408829--41408861	17	2.0	16	94	5	57	18	27	12	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41409962--41410520	27	20.6	27	82	5	660	19	16	20	43	1.88
41422231--41422266	18	1.9	18	88	5	54	58	2	0	38	1.13
41422252--41422303	13	3.4	15	80	19	63	50	0	0	50	1.00
41422256--41422327	30	2.6	27	75	16	74	50	1	1	47	1.18
41435708--41436091	189	2.0	189	88	2	565	35	13	20	31	1.91
41440030--41440055	7	3.7	7	100	0	52	53	0	0	46	1.00
41442201--41442312	11	10.4	11	68	13	72	38	1	0	59	1.08
41442184--41442312	33	4.0	32	89	8	190	38	1	0	59	1.07
41442184--41442311	64	2.0	65	92	4	215	39	1	0	59	1.07
41442273--41442326	21	2.5	20	85	11	72	38	0	3	57	1.17
41445282--41445321	3	13.3	3	94	0	71	62	0	2	35	1.09
41448124--41448192	35	2.0	35	100	0	138	39	8	8	43	1.66
41462555--41462589	15	2.4	15	90	4	54	48	0	8	42	1.33
41468977--41469046	4	17.5	4	76	16	56	21	2	1	74	1.03
41468973--41469047	24	3.0	24	79	14	75	24	2	1	72	1.06
41468976--41469046	17	4.1	17	72	13	56	21	2	1	74	1.02
41469872--41470062	101	1.9	100	82	8	244	28	16	24	30	1.97
41470050--41470113	22	2.9	21	76	19	58	75	1	1	21	0.98
41470057--41470094	10	3.7	10	83	16	51	71	2	0	26	1.00
41470603--41470637	15	2.4	15	90	4	54	48	0	8	42	1.33
41474842--41475089	131	1.9	131	82	2	300	45	10	5	37	1.63
41475926--41475954	5	5.8	5	100	0	58	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41479405--41479469	13	4.9	13	76	10	69	30	4	26	38	1.76
41479413--41479469	27	2.1	28	90	3	89	35	3	26	35	1.74
41479697--41479744	19	2.6	18	77	9	51	52	0	2	45	1.12
41481551--41481684	71	1.9	71	83	6	173	55	13	8	23	1.65
41483156--41483189	15	2.3	15	94	0	59	44	0	5	50	1.26
41483285--41483321	15	2.5	15	100	0	74	43	0	5	51	1.24
41483037--41483465	132	3.3	132	95	0	763	35	8	6	48	1.60
41483420--41483452	15	2.2	15	100	0	66	42	0	6	51	1.26
41485303--41485381	25	3.2	25	96	0	140	45	27	24	2	1.66
41485293--41485331	19	2.1	19	95	0	69	51	23	25	0	1.49
41486367--41486477	50	2.3	50	93	3	199	15	18	5	60	1.54
41487987--41488247	90	2.9	90	83	1	281	35	13	22	27	1.92
41487986--41488279	90	3.3	90	80	3	279	35	13	23	27	1.93
41492026--41492145	34	3.6	34	86	4	158	45	15	5	33	1.69
41498305--41498357	18	3.0	17	91	5	79	39	1	1	56	1.21
41498505--41498610	44	2.5	41	80	16	135	34	31	3	30	1.75
41498518--41498610	44	2.1	46	93	4	163	36	30	4	29	1.77
41498592--41498629	16	2.4	16	95	0	67	26	34	2	36	1.71
41500067--41500126	4	15.0	4	100	0	120	50	25	0	25	1.50
41502176--41502233	22	2.7	21	76	10	53	41	17	5	36	1.72
41502703--41503079	131	2.9	131	85	1	513	25	25	19	29	1.98
41503076--41503452	89	4.2	89	83	4	429	24	22	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41503111--41503346	45	5.3	45	66	13	137	22	24	24	28	1.99
41503470--41503991	44	11.7	44	72	9	324	28	21	18	31	1.97
41503412--41503997	225	2.6	225	90	1	917	28	22	18	30	1.97
41509346--41509395	24	2.2	23	89	7	75	34	2	6	58	1.34
41514051--41514108	22	2.6	22	81	7	64	41	17	5	36	1.72
41514080--41514123	19	2.5	17	86	13	70	31	18	9	40	1.81
41516544--41516583	20	1.9	22	85	10	57	32	0	5	62	1.17
41516694--41516743	16	3.2	16	78	16	68	66	0	0	34	0.92
41516679--41516743	31	2.3	25	87	12	67	63	0	0	36	0.95
41516692--41516742	15	3.3	15	79	15	68	64	0	0	35	0.94
41521170--41521208	17	2.4	16	84	16	53	33	12	0	53	1.39
41522116--41522157	18	2.2	20	87	8	61	33	21	9	35	1.86
41524080--41524129	17	2.7	20	78	18	70	10	0	44	46	1.37
41528710--41528759	17	2.7	20	78	18	70	10	0	44	46	1.37
41536668--41536697	12	2.4	13	94	5	53	16	6	0	76	0.99
41536665--41536722	28	2.1	28	81	9	66	13	12	1	72	1.20
41536978--41537041	24	2.6	24	80	5	65	31	3	20	45	1.67
41538547--41538595	3	16.3	3	85	8	64	61	0	2	36	1.08
41539924--41539957	14	2.5	14	90	4	52	52	32	0	14	1.42
41540814--41540859	24	1.9	24	86	8	67	34	15	10	39	1.82
41545178--41545205	8	3.5	8	100	0	56	21	0	0	78	0.75
41545185--41545246	29	2.2	26	83	13	79	32	1	0	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41545202--41545260	11	5.5	11	78	15	54	37	3	0	59	1.14
41545195--41545303	30	3.6	30	75	9	89	35	2	0	61	1.10
41545202--41545288	41	2.1	42	87	6	124	33	3	0	63	1.11
41545265--41545310	20	2.2	20	88	3	65	36	2	0	60	1.09
41550686--41550812	67	1.9	68	91	1	211	48	7	25	19	1.74
41558766--41558810	22	2.0	22	100	0	90	46	8	22	22	1.79
41563484--41563725	50	4.8	50	91	1	378	20	30	22	26	1.98
41563819--41563849	13	2.4	13	94	0	53	54	12	0	32	1.38
41564062--41564119	30	1.9	30	85	0	80	29	24	5	41	1.76
41571092--41571243	71	2.1	72	93	1	261	22	17	29	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173