genome.fa.s17.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  85  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26578464--26578555	47	2.0	47	84	0	121	42	21	14	21	1.88
26585712--26585896	79	2.3	81	84	7	236	24	22	27	25	2.00
26585713--26585896	40	4.6	40	83	9	216	24	22	27	25	2.00
26585765--26585929	79	2.1	79	84	6	210	26	21	27	25	1.99
26587287--26590104	935	3.0	934	92	1	4605	31	19	16	32	1.94
26596339--26596375	18	2.1	18	94	0	65	48	5	27	18	1.70
26600305--26600495	101	1.9	99	85	2	265	25	25	17	31	1.97
26603252--26603542	50	5.8	50	85	0	323	23	28	20	27	1.99
26608714--26608967	43	5.9	43	78	2	217	35	22	16	25	1.95
26608709--26608967	86	3.0	86	79	4	290	34	23	16	25	1.96
26608705--26608965	129	2.0	129	84	1	335	35	23	16	24	1.95
26613901--26613954	23	2.3	24	87	3	74	22	12	9	55	1.65
26614618--26614779	7	22.9	7	74	7	94	44	30	2	22	1.66
26614618--26614784	14	11.8	14	76	7	113	44	29	2	22	1.65
26615004--26615187	40	4.6	40	82	2	217	29	26	19	25	1.98
26615004--26615189	80	2.3	80	84	0	246	29	26	19	25	1.99
26615080--26615376	155	1.9	155	84	2	400	29	21	20	27	1.98
26615249--26615343	40	2.4	40	80	3	102	31	16	21	30	1.95
26616507--26616720	68	3.2	68	88	2	299	25	25	16	31	1.97
26616542--26616720	33	5.3	33	68	5	115	26	25	16	31	1.96
26616575--26616687	35	3.3	35	70	7	115	28	25	15	30	1.95
26624535--26624592	3	19.3	3	81	0	71	58	1	5	34	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26625965--26626068	51	2.0	51	86	0	145	25	24	19	30	1.98
26626040--26626281	120	2.0	120	88	0	358	26	21	23	27	1.99
26626160--26626756	144	4.2	143	92	0	933	26	22	21	29	1.99
26626573--26626696	44	2.8	45	78	1	133	27	24	20	27	1.99
26626160--26626756	287	2.1	287	90	0	944	26	22	21	29	1.99
26627989--26628110	46	2.5	48	84	9	158	11	27	21	39	1.88
26628538--26628584	16	3.0	15	81	9	58	2	4	10	82	0.88
26628539--26628598	9	6.8	9	79	9	61	1	5	10	83	0.87
26628557--26628598	7	6.1	7	80	5	50	0	4	11	83	0.79
26634448--26634498	3	17.0	3	76	8	50	58	0	7	33	1.27
26636917--26637016	49	2.0	49	83	7	123	32	12	12	44	1.78
26646672--26646702	16	1.9	16	93	0	53	48	0	0	51	1.00
26649056--26649225	48	3.5	48	85	0	205	27	21	28	22	1.99
26652041--26652066	12	2.2	12	100	0	52	34	7	15	42	1.75
26652418--26652453	3	12.0	3	87	0	54	30	2	2	63	1.22
26652580--26652623	17	2.6	17	85	3	63	40	11	0	47	1.39
26652758--26652826	30	2.3	30	85	5	86	36	2	5	55	1.39
26652783--26652862	28	2.8	27	81	5	79	35	3	5	56	1.39
26652718--26652862	30	5.3	26	73	13	71	35	2	4	57	1.32
26656097--26656136	16	2.5	16	87	0	62	65	10	17	7	1.46
26657748--26658366	44	14.0	44	76	6	563	27	15	27	30	1.96
26657732--26658365	132	4.8	132	87	5	708	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26658342--26658514	44	3.8	45	72	11	143	28	30	23	17	1.97
26658356--26658680	88	3.6	89	83	4	386	29	28	22	19	1.98
26658446--26658713	88	3.0	87	81	4	290	29	26	22	21	1.99
26658680--26658889	44	4.8	44	84	3	271	26	17	25	30	1.97
26659678--26659703	12	2.2	12	100	0	52	34	7	15	42	1.75
26659690--26659737	19	2.4	20	93	6	80	37	10	14	37	1.81
26659716--26659760	23	2.0	22	82	4	54	40	4	17	37	1.70
26660233--26660276	17	2.6	17	85	3	63	40	11	0	47	1.39
26660440--26660496	30	1.9	30	85	7	80	36	3	3	56	1.34
26679338--26679423	41	2.1	42	86	2	120	20	20	6	51	1.71
26681541--26681571	15	2.1	15	93	0	53	48	16	12	22	1.80
26683706--26683821	43	2.7	44	90	2	189	28	20	20	30	1.98
26683846--26684577	132	5.5	132	91	0	1160	29	24	16	29	1.97
26683846--26684573	265	2.7	265	91	0	1197	29	24	16	28	1.97
26683846--26684580	44	16.7	44	77	5	617	29	24	16	29	1.97
26699382--26699419	20	1.9	20	100	0	76	63	0	0	36	0.95
26702835--26702868	13	2.6	13	95	0	59	26	23	35	14	1.94
26713958--26714014	24	2.4	24	90	0	87	38	5	8	47	1.57
26723335--26723558	112	2.0	112	87	5	321	32	12	6	48	1.67
26723793--26723880	5	17.4	5	87	6	97	40	0	3	55	1.16
26724321--26724378	22	2.6	22	80	0	71	32	12	18	36	1.88
26739995--26740428	137	3.2	137	82	2	541	25	19	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26739995--26740197	68	3.0	68	72	6	194	24	19	25	30	1.98
26739945--26740439	137	3.6	136	79	4	498	26	20	22	31	1.98
26752165--26752234	30	2.3	30	85	7	88	31	11	12	44	1.78
26753909--26753959	20	2.7	20	87	6	79	52	0	0	47	1.00
26760309--26760334	11	2.4	11	100	0	52	38	0	0	61	0.96
26762837--26762930	35	2.6	36	88	5	138	44	15	15	23	1.85
26763828--26763883	25	2.2	25	100	0	112	21	21	46	10	1.81
26764890--26765501	317	1.9	317	100	0	1224	39	16	9	33	1.81
26766302--26766346	21	2.1	22	83	4	56	55	0	4	40	1.20
26766314--26766347	16	2.1	16	89	10	52	52	0	0	47	1.00
26770239--26770297	30	2.0	30	83	6	75	47	11	6	33	1.67
26784830--26784860	11	2.8	11	100	0	62	25	25	29	19	1.99
26792987--26793034	22	2.2	22	100	0	96	62	16	4	16	1.48
26794310--26794493	101	1.8	102	88	5	284	22	15	28	33	1.95
26794310--26794443	50	2.7	50	84	3	180	22	17	28	32	1.96
26794308--26794492	51	3.7	50	81	5	212	22	15	29	32	1.95
26794503--26794590	45	2.0	45	90	0	140	28	18	20	32	1.96
26796501--26796525	6	4.2	6	100	0	50	68	16	0	16	1.22
26798061--26798107	18	2.6	18	83	6	60	74	14	0	10	1.07
26809617--26809647	15	2.1	15	100	0	62	25	19	32	22	1.97
26818605--26818645	20	2.0	20	85	0	55	60	0	4	34	1.18
26823305--26823345	11	3.7	11	96	0	73	75	4	7	12	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26837611--26837684	39	1.9	38	86	8	105	33	18	21	25	1.96
26837725--26837962	41	5.8	41	86	2	300	22	22	25	29	1.99
26838077--26838109	15	2.3	15	89	5	50	27	0	27	45	1.54
26838343--26838403	15	4.1	15	79	8	63	27	0	32	39	1.57
26838343--26838408	22	3.0	22	79	2	78	27	1	34	36	1.66
26842683--26843383	336	2.1	336	92	1	1165	27	17	19	35	1.94
26843421--26843462	16	2.5	17	84	3	50	69	0	26	4	1.08
26844702--26844754	17	3.1	17	78	5	61	45	15	1	37	1.57
26844724--26844787	13	4.8	13	78	17	69	43	14	1	40	1.54
26844810--26844894	22	4.1	22	71	22	67	44	11	0	43	1.40
26844702--26845097	74	5.4	73	73	15	293	43	11	2	42	1.53
26844819--26845057	17	13.5	17	67	19	116	43	11	1	43	1.51
26844794--26845097	104	2.8	104	82	9	344	43	11	1	43	1.51
26844737--26845072	178	1.9	181	94	3	606	43	11	2	42	1.53
26844979--26845037	31	1.9	31	89	6	93	42	13	0	44	1.44
26844920--26845088	39	4.5	37	79	13	159	43	12	2	41	1.55
26845165--26845193	12	2.4	12	100	0	58	58	0	0	41	0.98
26845192--26845477	9	34.7	9	66	17	165	45	20	0	33	1.56
26845192--26845477	25	11.2	25	74	11	192	45	20	0	33	1.56
26845228--26845316	41	2.2	41	85	4	117	44	20	1	33	1.59
26845289--26845475	16	13.0	16	64	25	96	45	20	0	33	1.56
26845192--26845475	96	2.9	97	92	4	453	45	20	0	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26845324--26845477	41	3.7	41	79	7	150	44	20	0	33	1.57
26845365--26845477	59	1.9	59	98	0	217	44	21	0	34	1.52
26850999--26851036	19	2.0	19	94	0	67	28	10	2	57	1.45
26851228--26851477	43	5.8	43	87	0	331	20	19	33	26	1.97
26852420--26852451	16	2.0	16	93	0	55	25	15	0	59	1.36
26855224--26855262	19	2.1	19	85	0	51	66	0	0	33	0.92
26855825--26855861	9	4.1	9	92	0	65	45	13	10	29	1.77
26855897--26855973	30	2.6	30	91	4	120	20	44	0	35	1.52
26872496--26872627	50	2.6	50	81	2	140	28	21	28	22	1.99
26875353--26875407	25	2.3	24	81	6	67	45	10	9	34	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173