genome.fa.s17.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  62  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17797462--17797513	27	1.9	27	88	0	77	32	21	17	28	1.96
17806332--17806391	27	2.2	27	82	5	68	16	23	26	33	1.96
17808307--17808343	18	2.1	18	100	0	74	51	5	21	21	1.68
17812949--17812999	11	4.5	11	75	15	50	60	5	5	27	1.43
17813081--17813119	3	13.0	3	100	0	78	66	0	0	33	0.92
17814634--17814999	100	3.7	100	86	0	473	22	19	23	33	1.97
17814634--17814993	50	7.2	50	72	5	269	22	18	24	34	1.96
17814634--17814999	200	1.8	200	87	0	543	22	19	23	33	1.97
17814977--17815022	23	2.0	23	91	0	74	17	23	19	39	1.92
17815165--17815376	44	4.6	44	71	16	160	26	20	19	33	1.97
17815092--17815376	141	2.0	142	93	2	493	27	20	17	34	1.95
17817676--17817712	15	2.5	15	90	0	56	18	0	10	70	1.16
17822555--17822608	3	18.0	3	100	0	108	66	0	0	33	0.92
17826121--17826337	79	2.7	78	81	10	253	26	21	26	25	1.99
17826117--17826337	39	5.6	39	87	6	245	26	21	27	25	1.99
17826160--17826370	79	2.7	78	82	10	207	27	20	26	25	1.99
17833966--17834188	77	2.8	80	81	12	255	25	22	26	25	2.00
17833966--17834188	40	5.7	40	85	7	262	25	22	26	25	2.00
17835693--17835721	15	1.9	15	100	0	58	31	6	27	34	1.83
17838084--17838127	23	1.9	22	82	17	54	36	27	0	36	1.57
17838175--17838260	45	1.9	45	90	0	136	34	22	15	27	1.94
17838316--17838450	50	2.7	51	77	3	148	31	28	17	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17848758--17848795	12	3.2	12	92	0	58	63	0	2	34	1.09
17852441--17852474	16	2.2	15	89	5	50	55	2	0	41	1.15
17860678--17860710	17	1.9	17	93	0	57	75	6	0	18	1.00
17874781--17874822	17	2.5	17	88	0	57	73	7	2	16	1.15
17878774--17878910	69	2.0	69	81	8	163	43	18	18	18	1.89
17886826--17886890	7	9.3	7	81	6	60	56	0	1	41	1.08
17886845--17886893	7	6.9	7	88	4	62	51	0	0	48	1.00
17899050--17899077	6	4.7	6	100	0	56	67	0	0	32	0.91
17899446--17899482	13	3.1	12	92	7	58	75	0	8	16	1.02
17911231--17911277	20	2.3	20	85	0	76	8	29	23	38	1.84
17915429--17915477	19	2.6	19	87	9	73	2	12	0	85	0.68
17922354--17922384	9	3.6	9	91	8	55	80	0	9	9	0.90
17922354--17922383	8	3.6	8	95	4	51	80	0	10	10	0.92
17925233--17925268	18	1.9	19	94	5	65	36	19	0	44	1.51
17934143--17934181	12	3.2	12	85	0	51	20	23	5	51	1.67
17934381--17934619	50	4.7	50	79	4	194	23	27	20	28	1.99
17941915--17942157	50	4.7	51	79	8	212	25	26	20	28	1.99
17941965--17942151	100	1.8	104	83	6	256	24	28	19	27	1.99
17947407--17947446	21	1.9	21	85	10	55	27	7	40	25	1.82
17950515--17950554	18	2.2	19	86	4	55	70	0	22	7	1.12
17958551--17958714	87	1.9	86	83	3	213	25	16	23	34	1.95
17959094--17959137	19	2.3	19	84	7	54	50	6	15	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17960330--17960428	40	2.5	40	84	0	144	38	18	26	17	1.92
17960321--17960449	40	3.2	40	74	9	120	34	17	27	20	1.94
17974545--17974643	44	2.2	44	98	0	189	24	29	20	26	1.99
17981164--17981309	57	2.6	57	84	6	199	43	4	19	31	1.72
17981267--17981349	41	2.0	42	85	2	114	48	2	24	25	1.63
17986897--17987035	57	2.5	55	88	5	201	41	5	21	31	1.77
17986996--17987075	43	1.9	43	85	7	112	53	2	22	21	1.57
17997990--17998175	73	2.5	73	97	0	354	40	24	6	28	1.79
17998176--17998204	3	9.7	3	100	0	58	68	0	0	31	0.89
18002408--18002593	73	2.5	73	99	0	363	40	24	6	27	1.80
18002594--18002622	3	9.7	3	100	0	58	68	0	0	31	0.89
18009524--18009588	33	2.0	33	87	6	96	20	18	23	38	1.93
18012591--18012645	24	2.3	24	96	0	101	43	3	20	32	1.69
18016402--18016548	40	3.7	40	83	5	120	25	27	21	25	2.00
18016448--18016628	80	2.3	80	83	9	219	27	27	20	23	1.99
18016445--18016628	40	4.6	40	81	7	196	28	27	20	23	1.99
18024250--18024396	40	3.7	40	83	5	120	25	27	21	25	2.00
18024296--18024476	80	2.3	80	83	9	219	27	27	20	23	1.99
18024293--18024476	40	4.6	40	81	7	196	28	27	20	23	1.99
18027646--18027721	20	3.8	20	67	19	59	17	31	18	32	1.94
18035583--18035624	21	2.0	21	81	9	50	33	7	26	33	1.83
18038871--18038913	22	2.0	22	85	0	59	72	2	0	25	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18040607--18040679	23	3.2	23	84	5	103	30	26	19	24	1.98
18047353--18047392	17	2.4	17	95	0	71	57	25	0	17	1.40
18047899--18047950	23	2.3	23	93	0	86	32	25	23	19	1.97
18049631--18049800	40	4.2	40	85	1	216	17	28	17	37	1.92
18049733--18049794	20	3.1	20	70	9	63	12	32	17	37	1.88
18051593--18051708	25	4.6	25	73	8	83	16	23	20	39	1.92
18051651--18051733	25	3.3	25	80	12	82	21	25	19	33	1.97
18059319--18059471	73	2.1	73	90	0	234	21	22	20	35	1.96
18059571--18059642	25	2.9	24	79	8	74	22	25	19	33	1.97
18059660--18059712	25	2.1	25	82	0	61	20	26	20	32	1.98
18064983--18065023	21	2.0	21	85	9	57	26	19	21	31	1.97
18105494--18105571	29	2.7	28	84	11	104	25	15	30	28	1.96
18105524--18105852	173	1.9	175	91	1	545	29	14	24	31	1.95
18111807--18111999	49	3.9	49	91	0	305	33	29	12	24	1.92
18112867--18113404	102	5.3	102	91	1	828	32	27	19	21	1.97
18113046--18113097	27	1.9	27	96	0	95	26	28	23	21	1.99
18113351--18113404	27	2.0	28	85	3	74	25	29	22	22	1.99
18116806--18116842	14	2.6	15	83	12	51	43	8	0	48	1.32
18116857--18117044	61	3.1	61	68	14	181	43	2	5	48	1.39
18116918--18116963	16	2.9	16	78	12	51	45	0	2	52	1.13
18116813--18117081	120	2.2	120	93	3	454	42	2	4	49	1.37
18116858--18117041	57	3.1	58	66	25	139	42	2	5	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18117038--18117079	15	2.7	16	82	14	52	45	0	2	52	1.13
18117029--18117070	15	2.9	15	82	10	52	47	0	0	52	1.00
18117205--18117314	45	2.6	43	79	11	120	32	29	5	32	1.80
18117295--18117362	16	4.2	16	94	0	118	35	36	0	27	1.58
18120964--18121156	49	3.9	49	88	3	289	34	29	12	23	1.92
18122126--18122336	42	5.5	42	75	19	242	34	27	16	20	1.95
18122021--18122222	102	2.0	103	89	1	307	32	28	18	20	1.96
18122124--18122372	75	3.3	75	97	0	453	34	27	17	20	1.95
18122243--18122475	103	2.2	103	89	3	349	35	26	18	20	1.95
18122379--18122517	42	3.5	42	71	16	161	35	28	15	20	1.94
18121986--18122515	253	2.1	253	91	2	841	33	26	18	21	1.96
18126341--18126517	97	1.8	98	82	1	230	27	15	19	38	1.91
18126341--18126517	49	3.6	49	83	1	203	27	15	19	38	1.91
18148019--18148051	16	2.1	16	94	5	59	30	0	0	69	0.88
18173678--18173715	20	1.9	20	88	0	58	44	0	10	44	1.38
18176664--18176692	15	1.9	15	100	0	58	34	27	13	24	1.93
18176679--18176972	27	11.0	27	75	7	201	38	19	20	22	1.94
18176679--18177051	54	7.0	54	75	8	192	37	18	20	22	1.94
18176696--18177161	81	5.8	81	78	5	241	36	18	20	23	1.95
18176877--18177169	27	10.9	27	81	0	334	34	19	21	24	1.96
18177207--18177288	24	3.5	24	77	1	76	23	3	25	47	1.68
18177463--18177662	32	6.3	32	82	2	215	18	20	22	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18177463--18177662	64	3.1	64	83	2	242	18	20	22	39	1.93
18177467--18177648	96	1.9	96	85	2	249	18	20	22	37	1.94
18179295--18179324	16	1.9	16	93	6	53	30	0	20	50	1.49
18184865--18184919	27	2.0	27	89	0	83	25	16	14	43	1.86
18191712--18192189	27	17.9	27	81	4	407	43	21	17	17	1.88
18192357--18192407	26	2.0	26	88	7	77	17	17	27	37	1.93
18192525--18192634	28	4.0	28	87	1	168	25	23	20	30	1.99
18196706--18196730	10	2.5	10	100	0	50	28	0	24	48	1.52
18204360--18204394	15	2.3	15	100	0	70	28	20	8	42	1.81
18206455--18206602	54	2.7	54	84	4	183	17	28	27	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173