genome.fa.s17.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  123  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37779597--37779644	14	3.4	14	82	5	53	16	10	0	72	1.10
37783276--37783322	23	2.0	23	100	0	94	27	17	29	25	1.97
37794350--37794463	56	2.0	56	98	0	219	34	14	7	43	1.74
37794824--37794871	21	2.5	19	86	10	62	41	22	2	33	1.66
37794881--37794924	19	2.5	17	85	10	61	40	34	0	25	1.56
37803658--37803708	25	2.0	26	88	3	77	25	23	25	25	2.00
37804222--37804265	21	2.1	21	86	0	61	43	9	2	45	1.48
37807160--37807196	12	3.1	12	92	0	56	43	13	21	21	1.87
37815072--37815174	27	3.8	27	87	5	145	40	19	18	21	1.91
37815072--37815186	54	2.1	54	88	0	167	38	21	17	22	1.93
37815072--37815186	27	4.3	27	84	6	135	38	21	17	22	1.93
37815558--37815779	27	8.2	27	85	2	266	43	19	17	19	1.89
37815558--37815780	81	2.8	80	88	1	320	43	19	17	20	1.89
37815558--37815807	81	3.1	79	80	4	259	42	18	18	21	1.90
37816115--37816258	28	5.2	28	80	1	157	27	22	19	31	1.98
37816860--37816904	21	2.1	21	87	0	63	44	11	2	42	1.52
37816898--37816922	11	2.3	11	100	0	50	28	16	0	56	1.41
37818629--37818665	14	2.8	13	88	8	56	0	16	2	81	0.81
37820021--37820224	109	1.9	109	88	0	309	30	23	12	32	1.92
37822649--37822721	27	2.7	27	85	4	85	26	21	16	35	1.94
37826273--37826321	18	2.7	18	75	12	55	53	0	14	32	1.41
37829743--37829790	19	2.4	21	83	13	57	27	2	8	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37829753--37829790	18	2.1	18	85	14	51	28	2	7	60	1.38
37836053--37836078	5	5.2	5	100	0	52	42	19	19	19	1.90
37836540--37836568	9	3.2	9	100	0	58	68	0	0	31	0.89
37837093--37837129	9	4.1	9	92	0	65	29	10	13	45	1.77
37837182--37837212	9	3.4	9	90	0	53	38	22	12	25	1.90
37838978--37839003	11	2.4	11	100	0	52	76	0	0	23	0.78
37843229--37843258	15	2.0	15	93	0	51	56	0	0	43	0.99
37844271--37844373	54	1.9	54	97	0	197	37	15	17	29	1.91
37844553--37844590	20	1.9	20	88	0	58	65	2	2	28	1.19
37850917--37850951	17	2.0	17	88	5	52	40	0	25	34	1.56
37855171--37855471	57	5.3	57	76	4	257	30	21	16	31	1.95
37855203--37855332	28	4.5	29	73	12	99	30	21	18	30	1.97
37855171--37855463	29	10.3	28	73	6	203	30	21	16	31	1.96
37855191--37855471	114	2.5	114	77	4	298	29	22	17	31	1.96
37856846--37856870	6	4.2	6	100	0	50	68	0	16	16	1.22
37858726--37858766	21	2.0	21	95	0	73	60	7	0	31	1.24
37863424--37863499	21	3.8	20	84	3	82	42	11	9	36	1.74
37863491--37863535	21	2.0	23	83	8	58	37	4	13	44	1.64
37863700--37863738	19	2.0	21	85	10	55	15	10	5	69	1.34
37863960--37863999	3	13.3	3	84	10	55	32	0	2	65	1.06
37863960--37864000	13	3.0	14	82	13	50	34	0	2	63	1.08
37870594--37871388	132	6.0	132	90	1	1218	30	19	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37870894--37871073	44	4.1	44	64	13	100	32	17	23	26	1.97
37871157--37871337	44	4.1	44	64	11	100	30	18	24	25	1.98
37871386--37871470	44	1.9	44	90	4	136	28	17	24	29	1.97
37871116--37872583	489	3.0	489	99	0	2873	29	20	24	26	1.99
37871605--37871877	132	2.1	132	93	1	467	30	19	24	24	1.98
37871875--37871959	44	1.9	44	88	4	127	28	16	24	30	1.96
37871605--37871933	132	2.5	132	87	3	387	29	20	23	26	1.99
37871861--37871988	44	2.9	44	79	8	109	29	18	22	28	1.98
37872094--37872366	132	2.1	132	93	1	467	30	19	24	24	1.98
37872364--37872448	44	1.9	44	88	4	127	28	16	24	30	1.96
37872094--37872422	132	2.5	132	87	3	387	29	20	23	26	1.99
37872350--37872477	44	2.9	44	79	8	109	29	18	22	28	1.98
37872652--37872713	19	3.1	21	86	8	87	43	9	11	35	1.73
37872907--37872945	19	2.0	21	85	10	55	15	10	5	69	1.34
37873167--37873206	3	13.3	3	89	10	64	35	0	0	65	0.93
37873167--37873207	21	2.0	20	95	4	73	36	0	0	63	0.95
37885033--37885086	21	2.6	21	84	0	72	25	0	14	59	1.36
37885035--37885085	7	7.3	7	80	14	52	23	0	15	60	1.35
37885162--37885332	83	2.1	83	90	0	270	45	7	15	31	1.75
37889650--37889723	38	1.9	39	94	2	132	55	10	0	33	1.35
37897366--37897419	20	2.7	20	73	0	54	37	20	29	12	1.90
37904280--37904519	133	1.8	132	88	2	365	37	9	20	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37906100--37906171	27	2.5	29	80	11	76	23	18	19	38	1.93
37906178--37906238	27	2.2	27	82	8	79	39	18	19	22	1.92
37906300--37906380	28	2.9	28	86	0	117	25	14	23	35	1.93
37908935--37908979	22	2.0	22	86	8	63	35	17	2	44	1.62
37909190--37909257	25	2.7	25	71	13	59	35	16	23	25	1.95
37919343--37919390	17	2.8	17	96	0	87	27	29	2	41	1.67
37922920--37922969	17	2.9	17	96	0	91	24	26	6	44	1.76
37939745--37939782	20	1.9	20	88	0	58	42	0	2	55	1.14
37943799--37943842	23	2.0	23	90	4	72	40	4	2	52	1.34
37943934--37944003	27	2.6	27	86	4	97	27	25	28	18	1.98
37944046--37944181	4	33.0	4	73	16	84	68	0	30	0	0.95
37944058--37944112	18	2.9	18	74	15	58	61	0	38	0	0.96
37944099--37944201	20	5.2	19	72	14	75	68	0	30	0	0.96
37944047--37944244	40	5.2	39	79	14	168	69	0	30	0	0.93
37944047--37944244	78	2.6	76	83	10	244	69	0	30	0	0.93
37944125--37944195	16	5.0	15	75	20	64	69	0	29	1	0.98
37944149--37944217	22	3.1	22	77	10	79	69	0	30	0	0.89
37945010--37945054	22	2.0	22	100	0	90	35	8	0	55	1.31
37944896--37945029	73	1.9	69	83	9	171	52	7	5	35	1.52
37945456--37945487	15	2.1	15	100	0	64	53	0	6	40	1.26
37949464--37949504	3	13.7	3	100	0	82	68	31	0	0	0.90
37949640--37949679	11	3.7	11	93	6	73	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37949774--37949863	27	3.1	27	78	20	108	18	32	26	22	1.97
37949784--37949851	34	2.0	34	100	0	136	17	35	26	20	1.95
37949891--37949916	13	2.0	13	100	0	52	15	7	15	61	1.55
37949917--37949961	23	2.0	23	100	0	90	53	0	8	37	1.32
37950226--37950286	29	2.1	29	93	0	104	50	3	1	44	1.28
37950756--37950809	21	2.5	21	77	14	56	70	1	5	22	1.18
37950764--37950809	21	2.2	21	88	0	65	73	2	4	19	1.10
37953618--37953688	25	3.0	23	83	6	79	30	18	29	21	1.97
37953618--37953786	25	6.9	23	71	11	70	34	18	28	17	1.94
37953717--37953794	25	3.1	25	84	0	102	38	19	25	16	1.92
37953923--37953986	25	2.6	25	85	7	78	34	17	26	21	1.95
37953923--37953993	24	3.0	23	83	6	88	32	16	28	22	1.96
37953485--37954100	305	2.0	305	95	0	1097	36	18	21	23	1.95
37954028--37954166	25	5.6	25	77	1	127	38	18	25	17	1.93
37954028--37954166	50	2.8	50	82	2	163	38	18	25	17	1.93
37956555--37956663	25	4.4	25	84	2	130	33	19	22	24	1.97
37959464--37959497	2	17.5	2	87	6	52	47	2	0	50	1.16
37959478--37961028	783	2.0	783	97	0	2922	42	20	8	28	1.81
37961233--37961316	25	3.4	25	77	6	89	33	17	22	26	1.96
37966622--37966680	27	2.2	27	81	3	66	44	10	10	35	1.72
37968074--37968189	57	2.1	55	85	9	155	45	6	17	31	1.72
37968081--37968207	57	2.3	57	82	8	145	47	7	16	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37969365--37969415	6	8.3	6	88	2	75	1	17	0	80	0.81
37974359--37974464	52	2.0	52	94	0	185	30	24	24	20	1.99
37975987--37976168	87	2.1	87	97	0	346	46	13	9	30	1.75
37978586--37978614	13	2.1	14	93	6	51	58	0	3	37	1.15
37978618--37978668	19	2.7	19	81	3	59	47	0	1	50	1.12
37978722--37978752	15	2.1	15	93	0	53	54	0	3	41	1.16
37979297--37979321	10	2.5	10	100	0	50	40	0	0	60	0.97
37980337--37980366	11	2.7	11	94	0	51	46	0	0	53	1.00
37980351--37980401	26	2.0	24	85	7	66	31	1	1	64	1.15
37981829--37981954	43	2.9	43	75	14	134	22	17	28	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173