genome.fa.s17.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  34  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9022664--9022726	23	2.6	25	72	10	67	34	7	0	57	1.28
9027140--9027182	20	2.2	20	91	0	68	27	6	16	48	1.71
9027229--9027262	12	2.8	12	95	4	59	41	2	0	55	1.15
9033019--9033081	26	2.3	27	86	5	83	36	0	1	61	1.05
9043248--9043383	43	3.1	44	80	6	150	35	23	19	22	1.96
9044963--9044988	11	2.4	11	100	0	52	53	0	7	38	1.30
9046540--9046613	17	4.2	18	80	11	82	28	0	2	68	1.03
9046531--9046613	26	3.1	26	77	6	78	26	1	3	68	1.13
9046548--9046647	9	11.6	9	69	18	61	31	0	4	65	1.11
9046811--9046917	35	3.1	35	94	2	180	17	18	19	43	1.88
9050249--9050296	17	2.9	17	81	3	62	16	0	25	58	1.38
9057738--9057764	12	2.2	12	100	0	54	29	33	25	11	1.91
9061755--9061795	3	13.7	3	89	0	64	34	60	0	4	1.18
9064122--9064187	31	2.1	32	82	2	80	46	15	9	28	1.76
9064275--9064315	18	2.3	18	86	0	55	19	2	4	73	1.13
9064728--9064780	26	1.9	26	88	11	79	66	0	1	32	1.03
9085257--9085314	17	3.6	17	73	15	52	67	0	31	1	1.01
9085476--9085996	19	28.2	19	65	25	164	32	0	13	53	1.44
9085449--9085636	61	3.1	61	70	14	156	31	0	13	54	1.39
9085500--9085813	95	3.5	86	83	10	280	31	0	13	54	1.43
9085612--9085995	49	8.1	48	78	13	393	32	0	13	53	1.46
9085622--9085949	27	13.8	25	73	20	246	32	0	13	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9085616--9085854	96	2.5	96	95	3	437	31	0	12	54	1.43
9085741--9085949	115	1.8	115	97	0	400	32	0	13	53	1.46
9085912--9085974	8	7.4	8	72	13	54	34	0	17	47	1.48
9086144--9086225	38	2.2	38	95	0	146	56	3	2	37	1.30
9091275--9091319	22	2.1	21	91	4	72	0	33	2	64	1.06
9091277--9091328	22	2.8	18	75	25	54	0	36	1	61	1.07
9091385--9091486	27	3.8	27	89	2	143	24	36	19	19	1.95
9098501--9098597	49	2.0	47	88	6	124	31	8	10	49	1.66
9100167--9100363	44	4.7	46	65	27	125	43	1	3	52	1.26
9100553--9100731	26	7.3	25	65	22	76	41	1	3	53	1.27
9099982--9100878	475	1.9	475	97	0	1713	42	2	4	51	1.34
9099968--9100878	120	7.6	120	95	1	1652	42	2	4	51	1.33
9101085--9101137	16	3.3	16	97	0	97	22	35	3	37	1.72
9105027--9105161	40	3.3	40	80	7	148	24	15	28	31	1.95
9105027--9105204	41	4.4	41	79	9	177	24	15	28	32	1.95
9105027--9105201	81	2.2	80	80	11	194	24	14	28	32	1.95
9105911--9105983	34	2.1	35	85	7	96	24	12	19	43	1.85
9106006--9106048	20	2.2	20	95	0	77	23	16	18	41	1.89
9107118--9107167	25	2.0	25	88	7	75	42	0	8	50	1.32
9108043--9108171	43	3.0	43	79	13	156	21	18	28	31	1.97
9113689--9113734	18	2.6	18	86	6	58	43	0	2	54	1.12
9113584--9113771	63	3.0	61	70	13	145	44	0	3	51	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9113923--9113959	16	2.3	16	100	0	74	21	35	5	37	1.77
9115207--9115288	31	2.6	31	84	7	103	51	7	4	36	1.51
9115235--9115298	31	2.1	30	82	5	76	53	4	7	34	1.51
9125290--9125340	22	2.3	22	100	0	102	27	33	0	39	1.57
9125312--9125427	51	2.3	51	93	0	205	27	26	0	44	1.60
9127731--9127778	25	1.9	25	100	0	96	45	0	14	39	1.45
9127781--9127817	9	4.2	9	96	3	67	29	0	10	59	1.31
9127832--9128314	51	9.8	50	79	9	354	48	23	3	24	1.66
9127832--9128367	74	7.3	74	82	7	601	48	23	3	24	1.65
9127854--9128379	23	21.7	23	80	8	458	48	24	2	24	1.65
9128403--9128632	115	2.0	116	90	4	367	41	9	6	42	1.64
9131591--9131952	123	2.9	124	89	4	554	32	21	16	29	1.95
9145709--9145777	29	2.4	29	83	4	88	15	21	17	44	1.86
9145786--9145855	29	2.4	30	85	4	83	10	18	24	47	1.79
9145802--9145863	29	2.1	29	88	5	90	9	17	22	50	1.75
9146694--9146738	24	1.9	24	90	4	74	44	24	2	28	1.66
9153415--9153528	24	4.6	24	71	11	86	32	21	27	19	1.97
9167331--9167371	20	2.0	21	85	4	57	65	2	21	9	1.34
9173258--9173290	15	2.1	16	94	5	59	36	0	0	63	0.95
9173299--9173343	20	2.1	22	88	8	67	53	0	0	46	1.00
9174517--9174559	10	4.4	10	80	13	54	67	0	32	0	0.91
9174517--9174560	19	2.2	20	88	4	63	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9174689--9174815	60	2.1	59	80	9	150	29	0	11	58	1.38
9174824--9174867	21	2.1	21	95	0	79	36	11	9	43	1.72
9175457--9175630	57	3.1	57	88	2	246	31	13	11	44	1.79
9175885--9175923	16	2.4	16	95	0	69	38	0	2	58	1.12
9181408--9181525	57	2.1	57	86	0	164	50	11	15	22	1.75
9184652--9184797	72	2.0	72	97	0	274	54	14	11	19	1.71
9190782--9190819	17	2.4	17	91	8	62	47	0	5	47	1.24
9193120--9193179	22	2.7	23	80	14	65	48	1	3	46	1.28
9205901--9205938	20	1.9	19	85	15	51	57	0	0	42	0.98
9206010--9206239	88	2.7	85	81	9	240	37	20	10	32	1.85
9206393--9206443	21	2.5	21	87	3	77	56	1	0	41	1.10
9206686--9206810	30	4.0	31	69	20	91	26	7	0	65	1.24
9206768--9206810	11	4.2	11	80	17	56	27	0	0	72	0.85
9206755--9206811	20	2.9	19	86	5	78	31	1	0	66	1.02
9206755--9206815	10	6.1	11	78	17	62	34	1	0	63	1.04
9206792--9206854	29	2.2	29	80	5	74	41	1	1	55	1.19
9207933--9207993	25	2.5	25	79	12	65	36	11	26	26	1.90
9207993--9208188	73	2.6	74	76	9	202	35	21	24	18	1.96
9208077--9208182	26	4.2	24	76	8	88	33	21	26	18	1.97
9207993--9208182	25	7.7	26	72	11	89	34	22	24	18	1.96
9212742--9212976	116	2.0	116	93	0	398	32	15	18	32	1.93
9215762--9215826	26	2.5	26	87	2	87	43	20	20	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9235396--9235436	22	1.9	21	90	5	64	36	0	9	53	1.34
9241864--9242062	68	3.0	67	72	18	191	40	4	6	48	1.48
9241934--9242050	62	1.9	62	84	5	159	40	3	6	49	1.46
9267736--9267809	21	3.5	21	73	1	67	29	20	32	17	1.95
9275234--9275276	18	2.4	19	80	11	54	16	34	30	18	1.93
9280824--9280880	21	2.7	21	75	5	62	17	22	19	40	1.91
9280866--9280926	20	3.0	21	70	4	61	18	31	16	34	1.93
9290284--9290343	26	2.3	26	85	5	77	46	13	6	33	1.69
9294757--9294781	11	2.3	11	100	0	50	20	16	12	52	1.75
9300223--9300279	26	2.2	26	83	0	69	17	26	19	36	1.94
9301658--9301741	42	2.0	42	92	0	141	15	28	27	28	1.96
9301658--9301753	42	2.3	42	88	0	129	16	30	26	27	1.97
9309313--9309389	8	9.9	8	70	19	56	37	1	3	57	1.26
9309353--9309384	13	2.5	13	100	0	64	37	0	0	62	0.95
9309313--9309395	21	4.0	21	77	13	82	38	1	3	56	1.24
9310032--9310098	22	3.0	22	75	0	71	14	22	19	43	1.87
9312096--9312155	28	2.2	27	88	8	86	33	25	21	20	1.97
9312612--9312709	27	3.6	28	85	6	114	18	14	21	45	1.84
9317380--9317426	16	2.9	16	81	6	51	59	0	4	36	1.17
9317412--9317475	7	9.7	7	71	21	50	56	3	3	37	1.31
9318341--9318397	19	3.0	19	97	0	105	17	21	35	26	1.95
9327544--9328204	332	2.0	328	83	4	819	24	21	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9331273--9331303	16	1.9	16	93	0	53	45	0	6	48	1.28
9334591--9334634	22	2.0	22	86	8	63	52	2	6	38	1.41
9336991--9337020	13	2.3	13	94	0	51	56	6	6	30	1.51
9337193--9337402	105	2.0	105	99	0	411	47	16	9	27	1.76
9338375--9338407	17	2.0	17	88	5	50	36	0	0	63	0.95
9338533--9338582	22	2.2	22	82	3	55	58	2	2	38	1.21
9340649--9340686	19	2.0	20	89	5	60	55	0	0	44	0.99
9340854--9340891	19	2.1	18	90	5	58	39	0	0	60	0.97
9340861--9340904	23	1.9	23	81	9	54	38	2	0	59	1.10
9344231--9344323	42	2.2	42	80	3	98	26	16	20	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173