genome.fa.s17.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  38  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10376640--10376842	107	1.9	106	87	3	300	29	17	18	34	1.94
10385836--10385886	24	2.1	24	88	0	75	37	3	9	49	1.55
10388615--10388710	17	5.3	17	74	17	70	61	3	1	34	1.19
10388647--10388710	9	7.0	9	81	15	78	62	1	0	35	1.05
10388624--10388720	30	3.4	28	77	11	99	61	2	2	34	1.19
10388783--10388856	18	4.4	17	71	21	59	56	2	0	40	1.13
10388794--10388860	7	8.6	7	87	12	71	58	1	0	40	1.07
10388857--10389063	9	21.8	9	67	22	70	57	4	1	35	1.29
10389021--10389096	18	4.4	16	75	18	64	65	2	2	28	1.19
10389011--10389105	27	3.6	25	76	18	70	65	3	3	28	1.23
10389344--10389391	22	2.3	21	85	7	62	31	0	8	60	1.26
10389334--10389391	20	2.8	20	81	5	62	32	0	6	60	1.23
10389387--10389511	28	4.5	26	72	20	78	32	1	2	63	1.17
10389407--10389502	18	5.2	18	72	17	72	31	2	3	63	1.21
10389407--10389523	9	12.6	9	68	20	55	29	2	3	64	1.23
10399034--10399097	31	2.0	32	90	3	103	39	18	9	32	1.83
10399846--10399887	10	4.1	10	87	3	57	47	19	0	33	1.49
10400753--10400800	22	2.2	22	85	7	62	6	14	8	70	1.31
10401288--10401344	27	2.1	28	86	3	80	40	7	7	45	1.58
10403012--10403043	5	6.4	5	92	0	55	81	3	0	15	0.82
10403012--10403057	15	3.0	15	87	3	56	76	4	6	13	1.14
10405539--10405591	27	1.9	28	84	3	72	49	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10405539--10405598	27	2.2	28	81	3	68	48	0	6	45	1.29
10406358--10406384	3	9.0	3	100	0	54	66	0	0	33	0.92
10406358--10406413	9	5.9	10	78	19	50	69	0	3	26	1.04
10407840--10407934	47	2.0	47	100	0	190	27	16	14	41	1.88
10410092--10410161	31	2.3	30	76	13	72	47	0	0	52	1.00
10426176--10426224	25	1.9	25	84	12	64	71	6	8	14	1.29
10426670--10426703	3	11.3	3	87	12	52	70	0	0	29	0.87
10437381--10437420	20	2.0	21	90	5	64	42	2	0	55	1.13
10443154--10443206	20	2.7	19	77	16	54	33	0	5	60	1.20
10448229--10448287	29	2.0	29	90	0	91	45	1	8	44	1.44
10448866--10448943	30	2.7	30	86	9	101	52	2	25	19	1.58
10449313--10449687	199	1.9	199	82	4	470	34	10	15	39	1.83
10452361--10452458	23	4.3	23	90	2	162	31	26	21	20	1.98
10452368--10452456	45	2.0	45	95	0	160	31	26	22	19	1.97
10459260--10459357	23	4.3	23	90	2	162	31	26	21	20	1.98
10459267--10459355	45	2.0	45	95	0	160	31	26	22	19	1.97
10461335--10461378	21	2.1	21	91	0	70	36	40	9	13	1.76
10463441--10463471	11	2.8	11	95	0	53	32	6	12	48	1.67
10465305--10465331	14	1.9	14	100	0	54	37	14	11	37	1.82
10466478--10466700	62	3.6	62	96	1	396	47	11	7	34	1.67
10466478--10466700	123	1.8	124	94	2	396	47	11	7	34	1.67
10470384--10470450	21	3.2	21	73	0	62	46	19	20	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10470389--10470494	42	2.5	42	83	4	124	45	18	21	14	1.85
10470596--10470642	24	2.0	24	95	0	85	19	27	8	44	1.79
10472638--10472673	6	6.0	6	93	0	63	80	2	0	16	0.83
10472795--10472851	27	2.1	27	86	0	78	26	26	28	19	1.99
10476155--10476195	6	6.8	6	97	0	73	51	46	0	2	1.14
10478129--10478179	18	2.6	20	75	15	61	47	5	0	47	1.26
10478353--10478448	33	2.7	36	84	12	144	57	11	9	21	1.62
10478325--10478469	34	4.2	34	78	8	123	54	15	9	20	1.69
10478600--10478861	72	3.6	72	81	4	287	23	22	25	29	1.99
10479604--10479646	22	2.0	21	86	4	59	41	16	4	37	1.69
10495863--10495898	4	9.0	4	90	0	54	69	2	2	25	1.15
10496006--10496035	3	10.3	3	92	7	53	66	0	0	33	0.92
10497822--10497919	50	2.0	50	89	0	151	34	27	13	24	1.93
10497823--10497932	50	2.2	50	86	0	148	34	24	15	25	1.95
10497912--10498132	94	2.4	94	78	6	227	31	18	18	31	1.95
10509427--10509470	20	2.2	20	84	8	54	70	4	4	20	1.23
10511828--10511996	42	4.0	42	85	0	203	15	23	18	42	1.88
10511853--10511921	21	3.3	21	70	0	75	14	23	18	43	1.87
10511853--10511933	21	3.9	21	71	0	72	13	20	19	45	1.84
10520743--10521197	158	2.9	154	74	14	453	31	10	7	49	1.66
10521528--10521705	4	43.5	4	71	23	54	1	28	0	69	0.99
10521526--10521613	32	2.6	35	81	13	105	2	29	1	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10521532--10521712	10	18.7	10	69	18	84	1	28	0	69	0.99
10521594--10521724	14	9.0	14	70	15	79	0	29	0	70	0.88
10521532--10521712	38	4.6	38	75	16	145	1	28	0	69	0.99
10521594--10521713	24	5.1	24	72	9	95	0	27	0	72	0.85
10521558--10521664	45	2.3	47	88	7	175	0	26	0	71	0.97
10521567--10521688	28	4.4	28	68	17	85	0	28	0	70	0.93
10532695--10532741	2	23.5	2	95	0	85	53	0	46	0	1.00
10537475--10537537	31	2.0	31	84	6	83	50	1	3	44	1.27
10545785--10545898	9	12.7	9	72	18	51	56	2	2	38	1.27
10545814--10545897	9	9.4	9	78	18	54	58	2	1	38	1.19
10546404--10546638	9	24.6	9	69	13	105	33	3	2	60	1.25
10546538--10546590	11	5.2	11	84	13	69	24	1	0	73	0.93
10546529--10546590	20	3.1	20	77	13	65	24	3	0	72	0.99
10546524--10546592	29	2.4	29	90	0	102	27	2	0	69	1.02
10546538--10546650	20	5.7	20	76	13	83	26	4	2	66	1.24
10547412--10547448	9	4.1	9	92	0	65	45	13	10	29	1.77
10547974--10548002	9	3.2	9	100	0	58	31	0	0	68	0.89
10548622--10548661	20	2.0	20	85	9	55	55	25	17	2	1.55
10549193--10549231	16	2.4	16	82	4	51	5	12	2	79	1.00
10552073--10552116	19	2.3	20	84	7	56	27	22	11	38	1.88
10555552--10555590	18	2.3	18	86	8	55	76	0	15	7	0.99
10556874--10557151	83	3.3	82	70	14	269	31	19	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10556849--10557369	44	12.1	43	70	13	294	31	19	21	27	1.97
10556875--10557248	170	2.2	170	96	0	678	31	19	20	28	1.97
10557220--10557381	87	1.9	87	84	2	218	30	20	23	25	1.99
10557044--10557485	218	2.0	213	79	7	464	31	19	22	26	1.98
10557566--10557838	86	3.2	86	86	3	361	31	22	23	23	1.99
10557983--10558088	44	2.4	44	77	10	119	29	25	24	20	1.99
10558623--10558662	20	2.0	20	85	9	55	55	25	17	2	1.55
10561224--10561324	35	2.9	35	89	0	148	28	13	12	44	1.81
10566746--10566791	23	2.0	23	100	0	92	21	4	4	69	1.24
10571288--10571333	24	1.9	24	86	8	67	28	8	21	41	1.83
10579949--10580042	6	16.2	6	92	6	122	34	0	10	55	1.35
10583246--10583341	35	2.7	35	76	13	90	29	22	16	31	1.96
10584333--10584438	41	2.5	41	84	6	133	34	17	19	27	1.95
10584262--10584498	42	5.7	42	79	3	172	39	17	17	25	1.91
10584471--10584522	26	2.0	26	92	0	86	36	21	23	19	1.95
10584497--10584699	42	4.8	42	77	11	157	38	16	19	25	1.92
10584400--10584608	110	1.9	110	82	5	262	36	16	21	25	1.94
10584351--10584650	152	2.0	151	82	4	372	36	17	20	26	1.94
10584497--10584704	84	2.5	85	78	7	210	38	16	19	25	1.92
10586610--10586660	13	3.7	13	86	7	57	37	1	25	35	1.67
10587739--10587827	31	2.9	31	69	21	80	49	0	3	47	1.18
10596010--10596177	79	2.1	81	92	2	286	39	11	11	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10599100--10599281	92	2.0	92	98	0	355	37	18	19	24	1.93
10599646--10599740	3	31.7	3	73	8	68	31	6	2	60	1.34
10599843--10599884	20	2.1	20	82	8	50	38	4	0	57	1.20
10599829--10599874	16	3.0	16	82	17	62	39	2	0	58	1.10
10599829--10599884	16	3.2	17	78	12	60	39	3	0	57	1.16
10600203--10600735	108	5.0	108	90	3	781	28	17	20	33	1.95
10612401--10612650	45	5.3	45	76	13	263	32	21	21	25	1.98
10612349--10612716	95	3.9	95	90	1	540	30	20	22	26	1.98
10614136--10614236	3	33.7	3	75	7	80	31	5	1	60	1.32
10614325--10614380	18	3.2	17	80	14	62	39	3	0	57	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173