genome.fa.s17.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  161  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48322822--48323024	99	2.1	98	83	1	246	21	16	28	33	1.95
48323059--48323207	51	2.9	51	82	0	154	24	22	25	27	2.00
48323161--48323234	33	2.2	33	82	0	94	21	24	29	24	1.99
48323173--48323255	33	2.5	33	84	0	94	20	19	27	32	1.97
48328333--48328433	33	3.1	33	80	5	105	12	26	33	26	1.93
48328693--48328968	48	5.6	48	85	3	302	15	22	36	25	1.93
48328670--48328900	54	4.5	54	81	12	288	16	21	35	25	1.95
48329016--48329047	3	10.7	3	93	0	55	3	28	34	34	1.73
48330669--48330725	22	2.6	22	77	0	60	22	10	7	59	1.54
48337092--48337138	21	2.3	20	85	3	58	48	0	0	51	1.00
48343326--48343372	22	2.1	22	100	0	94	21	10	10	57	1.62
48343655--48343691	18	2.0	19	89	5	58	2	10	18	67	1.32
48358229--48358269	6	6.8	6	100	0	82	68	0	0	31	0.90
48372403--48372450	12	4.0	12	78	7	53	66	10	2	20	1.32
48372410--48372461	22	2.4	22	84	12	63	67	13	1	17	1.32
48372825--48372900	19	4.1	20	77	12	83	38	10	13	38	1.79
48372983--48373230	35	6.9	37	73	8	167	41	12	16	30	1.84
48372860--48373283	17	24.3	17	68	12	164	43	12	14	30	1.81
48373399--48373509	18	6.2	18	74	8	82	43	8	14	34	1.75
48373382--48373509	36	3.6	36	74	10	102	45	8	13	32	1.74
48373464--48373521	17	3.3	18	78	9	66	37	8	10	43	1.70
48373933--48373968	19	1.9	18	88	5	54	69	2	2	25	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48374267--48374333	10	6.3	10	71	19	55	0	26	0	73	0.84
48374272--48374308	14	2.7	14	84	16	51	0	29	0	70	0.88
48374272--48374333	27	2.3	27	80	5	72	0	29	0	70	0.87
48375745--48375807	31	2.0	31	96	0	117	30	19	11	39	1.86
48377411--48377595	37	5.0	37	93	1	300	26	20	14	38	1.91
48384584--48384616	7	4.7	7	96	0	57	63	15	9	12	1.51
48384576--48384616	14	2.9	14	88	0	64	65	14	7	12	1.45
48384576--48384616	21	2.0	21	85	0	55	65	14	7	12	1.45
48385178--48385350	17	9.8	17	66	22	56	43	12	12	31	1.80
48385157--48385252	19	4.9	19	73	19	83	37	12	14	35	1.84
48385301--48385347	17	2.6	18	83	13	60	42	10	12	34	1.78
48385400--48385627	17	12.9	18	71	11	116	46	11	13	29	1.78
48385399--48385632	70	3.3	69	77	10	197	46	11	13	28	1.78
48385431--48385633	35	5.7	37	76	9	140	46	11	13	28	1.78
48385429--48385633	34	5.9	34	75	10	162	46	11	13	28	1.78
48385753--48385888	35	3.9	34	77	11	139	42	11	13	31	1.81
48385745--48385894	18	8.5	17	79	6	138	44	12	14	30	1.81
48386310--48386345	19	1.9	18	88	5	54	69	2	2	25	1.15
48386641--48386711	10	6.7	10	73	17	63	0	26	0	73	0.84
48386640--48386710	27	2.7	27	77	2	81	0	26	0	73	0.84
48387418--48387539	30	4.1	31	83	9	139	40	2	23	33	1.68
48387370--48387532	60	2.7	59	72	16	140	38	4	22	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48387858--48387892	12	2.9	12	91	0	61	57	0	8	34	1.29
48387856--48387898	3	14.0	3	80	4	50	58	0	6	34	1.25
48390321--48390675	43	8.3	43	83	5	393	31	21	21	25	1.98
48390321--48390677	86	4.2	86	84	6	433	31	21	21	26	1.98
48391124--48391192	21	3.3	21	85	0	93	1	42	20	36	1.61
48396702--48396966	9	29.8	9	72	13	210	31	1	21	44	1.63
48396809--48396962	54	2.9	54	94	1	258	31	0	23	45	1.53
48396861--48396986	27	4.7	25	77	14	94	29	0	24	45	1.59
48397052--48397151	39	2.6	39	93	0	173	46	0	12	42	1.41
48397131--48397174	23	1.9	23	95	0	79	38	0	18	43	1.50
48397168--48397272	36	3.2	36	60	27	86	41	7	9	40	1.66
48397173--48397291	63	1.9	63	100	0	238	42	7	8	41	1.63
48397268--48397319	13	4.0	13	77	5	52	46	3	7	42	1.51
48399369--48400081	365	2.0	363	86	3	995	34	21	15	28	1.94
48400124--48400204	24	3.2	24	76	19	92	44	11	0	44	1.39
48400195--48400219	4	6.2	4	100	0	50	24	0	0	76	0.80
48400124--48400208	28	3.2	26	76	12	84	43	10	0	45	1.38
48400574--48400615	7	5.9	7	83	5	57	40	47	0	11	1.40
48400744--48400768	12	2.1	12	100	0	50	32	52	0	16	1.44
48400775--48400849	14	5.1	14	75	10	60	38	32	1	28	1.65
48401408--48402043	113	5.6	112	85	3	740	25	22	24	26	2.00
48401424--48402043	227	2.7	225	84	4	757	24	22	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48421046--48421104	12	4.8	12	75	12	57	66	11	1	20	1.33
48421053--48421101	22	2.2	22	82	13	57	67	12	2	18	1.32
48421230--48421263	9	3.8	9	88	0	50	52	0	11	35	1.38
48421230--48421264	18	1.9	18	94	0	61	54	0	11	34	1.37
48423422--48423465	20	2.1	21	84	12	56	22	0	2	75	0.92
48423568--48423625	20	2.7	22	76	17	59	43	0	5	51	1.24
48423602--48423670	24	2.8	24	74	10	68	42	2	1	53	1.24
48425329--48425380	16	3.2	16	91	0	86	40	5	30	23	1.78
48425366--48425466	39	2.4	44	80	12	113	28	2	30	37	1.72
48425624--48425653	15	1.9	16	93	6	53	50	6	0	43	1.28
48425725--48425754	15	1.9	16	93	6	53	50	6	0	43	1.28
48425603--48425833	101	2.3	101	93	0	399	49	5	1	43	1.33
48427520--48427572	27	2.1	27	82	10	67	43	0	0	56	0.99
48437409--48437468	3	20.3	3	80	10	70	61	1	3	33	1.22
48437398--48437459	20	3.2	19	82	11	72	59	1	3	35	1.23
48437398--48437468	14	5.1	14	79	16	76	59	1	4	35	1.26
48438962--48438992	7	4.4	7	95	0	53	41	12	3	41	1.59
48442113--48442148	6	6.0	6	86	0	54	0	61	0	38	0.96
48442113--48442148	18	2.0	18	100	0	72	0	61	0	38	0.96
48445527--48445559	12	2.8	12	90	4	50	42	33	18	6	1.75
48446520--48446572	21	2.5	21	78	0	61	32	30	9	28	1.88
48451934--48451970	3	12.3	3	100	0	74	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48452748--48453176	111	3.9	108	85	4	513	34	17	16	31	1.92
48452751--48453176	219	1.9	217	85	5	581	34	17	15	32	1.91
48453203--48453247	20	2.2	20	84	11	56	57	2	11	28	1.45
48453210--48453247	20	1.9	20	89	10	60	57	0	13	28	1.36
48453321--48453367	12	3.9	12	74	20	53	65	8	4	21	1.37
48453847--48453922	3	26.7	3	76	7	52	57	1	5	35	1.29
48453847--48453912	24	2.7	24	81	6	71	54	1	6	37	1.34
48453962--48454007	5	8.6	5	83	11	56	78	2	2	17	0.96
48454975--48454999	11	2.3	11	100	0	50	8	8	20	64	1.46
48455636--48455683	12	4.0	12	78	7	53	68	8	2	20	1.26
48455817--48455851	12	2.9	12	91	0	61	57	0	8	34	1.29
48455815--48455857	3	14.0	3	80	4	50	58	0	6	34	1.25
48458240--48458308	24	2.8	24	74	10	68	42	2	1	53	1.24
48466911--48466995	40	2.1	40	91	0	134	31	20	24	23	1.98
48467339--48467386	22	2.2	21	81	3	60	20	0	31	47	1.50
48467339--48467471	7	18.6	7	73	10	65	20	0	32	46	1.56
48467392--48467463	29	2.5	31	82	8	80	18	0	34	47	1.49
48468015--48468047	12	2.9	12	86	13	52	51	0	6	42	1.26
48470886--48471133	43	5.8	43	85	1	318	22	18	30	28	1.97
48471418--48471448	7	4.4	7	100	0	62	45	12	0	41	1.42
48475431--48475492	18	3.6	18	77	16	69	58	0	6	35	1.24
48475428--48475492	35	1.9	33	84	12	87	56	0	7	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48476693--48476744	15	3.5	15	100	0	104	7	0	46	46	1.31
48476695--48476737	8	5.6	8	78	10	54	4	0	48	46	1.22
48476938--48477124	44	4.4	41	74	10	151	28	21	21	28	1.98
48476968--48477158	44	4.4	43	72	7	154	26	23	18	30	1.98
48477047--48477257	44	4.9	44	70	6	155	25	24	20	29	1.99
48477232--48477343	42	2.6	42	81	11	127	32	21	20	25	1.98
48477353--48477470	46	2.6	46	84	5	143	27	18	22	32	1.97
48489849--48489910	18	3.6	18	77	16	69	58	0	6	35	1.24
48489846--48489910	35	1.9	33	84	12	87	56	0	7	35	1.28
48491106--48491157	15	3.5	15	100	0	104	7	0	46	46	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173