genome.fa.s17.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  98  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30610986--30611314	73	4.9	66	73	17	150	24	0	28	46	1.56
30611124--30611558	169	2.6	167	86	5	619	24	0	29	46	1.55
30611314--30611462	67	2.2	66	86	3	217	24	0	27	46	1.57
30611408--30611485	6	12.7	6	69	15	52	19	0	39	41	1.51
30611428--30611506	13	6.2	13	79	5	72	24	0	30	45	1.53
30611526--30611556	13	2.4	13	94	0	53	19	0	25	54	1.44
30611564--30611676	25	4.7	25	72	18	105	44	13	1	40	1.54
30612078--30612112	18	1.9	18	88	0	52	34	11	28	25	1.91
30612765--30612789	7	3.6	7	100	0	50	60	12	0	28	1.32
30613982--30614060	11	6.6	11	68	21	52	46	0	29	24	1.53
30613933--30614062	51	2.6	51	87	3	174	47	0	23	28	1.52
30614017--30614060	22	2.0	21	86	4	61	45	0	29	25	1.54
30614890--30614931	19	2.2	19	91	0	66	2	28	21	47	1.63
30614890--30615036	25	6.1	25	85	7	189	2	24	24	48	1.64
30614890--30614958	19	3.3	19	69	21	57	1	24	24	49	1.59
30615008--30615046	19	2.1	19	90	0	60	0	28	20	51	1.48
30618253--30618302	27	1.9	25	88	8	73	40	4	0	56	1.18
30618253--30618316	25	2.4	27	82	10	71	37	4	1	56	1.30
30618256--30618316	26	2.3	26	81	13	72	37	4	1	55	1.31
30619070--30619122	19	2.8	19	88	0	79	39	9	13	37	1.77
30619070--30619148	19	3.9	21	81	8	76	37	7	15	39	1.76
30619691--30619901	100	2.1	101	88	3	309	35	8	3	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30619819--30619868	16	3.1	16	77	13	57	38	6	4	52	1.45
30619855--30619893	20	2.0	20	89	0	60	30	10	0	58	1.31
30624715--30624762	14	3.4	14	78	18	55	33	4	4	58	1.36
30624739--30624790	20	2.5	20	79	20	54	30	3	1	63	1.23
30625424--30625618	98	2.0	98	90	0	309	28	10	24	36	1.89
30626208--30626242	17	2.1	17	100	0	70	11	17	28	42	1.83
30637060--30637893	44	19.0	43	63	16	201	29	20	24	25	1.99
30637052--30637972	132	7.0	132	93	0	1522	29	19	24	25	1.99
30642483--30643504	132	7.8	132	92	1	1705	29	18	23	28	1.98
30643831--30643941	19	5.8	19	89	0	177	39	9	13	37	1.76
30643838--30643941	38	2.7	38	98	0	199	40	8	12	38	1.74
30644572--30644622	20	2.5	20	83	0	75	37	7	0	54	1.29
30644560--30644718	52	3.1	51	70	21	152	33	9	3	52	1.52
30644515--30644724	102	2.1	100	89	6	316	33	8	4	53	1.50
30644679--30644716	20	1.9	20	88	0	58	31	13	0	55	1.38
30644562--30644721	48	3.2	48	68	20	137	33	9	4	52	1.53
30644751--30644788	19	2.1	19	90	5	60	39	0	0	60	0.97
30644828--30644886	31	1.9	31	82	6	75	16	6	8	67	1.38
30644963--30644987	13	1.9	13	100	0	50	24	0	8	68	1.16
30648192--30648242	24	2.3	21	87	12	68	29	17	11	41	1.85
30648199--30648247	24	2.0	24	100	0	98	26	16	16	40	1.89
30650797--30650838	23	2.0	21	86	13	59	35	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30652281--30652342	28	2.2	27	78	16	63	40	1	4	53	1.32
30659468--30659744	129	2.1	129	91	0	455	30	19	23	26	1.98
30659713--30660185	44	11.0	44	73	8	344	28	16	22	31	1.96
30659713--30660234	129	4.0	129	89	2	728	28	16	23	31	1.96
30659729--30660147	85	4.9	85	73	8	337	28	16	23	31	1.96
30660283--30660459	50	3.5	50	76	0	192	34	25	16	23	1.95
30660249--30660520	100	2.7	100	88	1	375	32	25	18	23	1.97
30660274--30660509	50	4.7	50	74	2	179	34	24	17	24	1.96
30667452--30667511	27	2.2	28	87	3	86	23	25	11	40	1.88
30668197--30668293	49	2.0	49	93	0	167	24	25	6	43	1.77
30672229--30672290	26	2.5	25	82	17	76	54	0	3	41	1.16
30673524--30673667	56	2.6	54	83	3	153	39	14	19	26	1.90
30673579--30673695	56	2.1	56	82	3	137	38	11	18	31	1.86
30676390--30676442	26	2.0	26	100	0	106	20	3	15	60	1.50
30676398--30676441	13	3.4	13	75	12	54	18	2	13	65	1.36
30677443--30677500	3	19.3	3	100	0	116	34	0	0	65	0.93
30677804--30677848	19	2.3	20	84	7	65	62	6	0	31	1.21
30677843--30677869	13	2.1	13	100	0	54	62	0	0	37	0.95
30678108--30678328	9	23.2	9	66	20	58	30	5	2	61	1.30
30678154--30678209	29	1.9	29	82	13	71	30	8	1	58	1.39
30678231--30678305	29	2.6	29	81	12	91	37	2	0	60	1.11
30678268--30678315	10	4.9	10	79	5	53	33	0	2	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30680885--30680928	20	2.2	20	84	8	54	29	2	2	65	1.16
30681382--30681406	11	2.3	11	100	0	50	48	0	0	52	1.00
30681695--30681722	3	9.3	3	100	0	56	67	0	0	32	0.91
30688880--30689303	224	1.9	225	87	2	620	24	26	15	33	1.95
30711581--30711776	41	4.8	40	81	10	236	19	22	30	27	1.98
30711581--30711776	82	2.4	83	86	5	283	19	22	30	27	1.98
30712176--30712210	14	2.4	14	90	4	52	22	2	34	40	1.69
30712184--30712210	14	1.9	14	100	0	54	22	0	33	44	1.53
30712485--30712514	15	2.0	15	100	0	60	26	0	46	26	1.53
30714650--30714711	31	2.0	31	96	0	115	12	17	22	46	1.82
30716628--30716851	43	5.2	43	82	2	245	21	18	32	27	1.96
30717386--30717468	25	3.3	25	81	0	85	6	25	15	53	1.65
30719014--30719048	18	1.9	18	88	0	52	51	5	5	37	1.50
30727676--30727708	14	2.4	14	90	5	50	54	0	6	39	1.25
30727673--30727838	85	2.0	85	86	2	235	51	7	7	34	1.57
30743191--30743282	45	2.0	45	93	0	157	33	14	19	32	1.92
30743203--30743277	22	3.4	21	69	10	60	34	14	21	29	1.93
30757832--30757886	27	2.3	21	70	30	56	30	3	14	50	1.60
30758850--30758946	49	2.0	46	82	11	115	31	8	11	48	1.69
30760175--30760480	91	3.4	91	94	1	542	47	2	4	46	1.36
30760488--30760537	14	3.2	16	81	18	54	46	2	0	52	1.12
30760531--30760722	66	3.1	64	66	22	174	41	4	5	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30760607--30760641	18	2.0	17	88	5	52	45	0	0	54	0.99
30760487--30760775	120	2.4	120	97	0	544	44	3	4	48	1.37
30760563--30760743	57	3.0	59	66	23	169	43	2	6	48	1.40
30760563--30760746	61	3.0	61	67	12	189	42	2	5	48	1.39
30760727--30760761	18	2.0	17	88	5	52	45	0	0	54	0.99
30760914--30761001	44	2.0	44	84	4	113	37	26	4	31	1.76
30771185--30771236	18	2.9	18	82	5	61	23	13	15	48	1.80
30777033--30777071	20	1.9	21	85	15	55	41	2	2	53	1.28
30777265--30777312	24	2.0	24	83	4	60	47	8	0	43	1.33
30777805--30777860	21	2.6	22	86	5	71	26	7	35	30	1.83
30781176--30781226	26	2.0	26	88	0	75	39	5	17	37	1.74
30781408--30781440	16	2.0	17	88	5	50	45	0	6	48	1.27
30787993--30788019	13	2.1	13	100	0	54	22	7	37	33	1.82
30794151--30794227	29	2.7	28	82	13	95	25	15	29	28	1.96
30801203--30801289	42	2.1	42	100	0	174	32	9	20	37	1.84
30804093--30804140	22	2.2	22	81	7	53	37	16	6	39	1.74
30808506--30808558	17	3.4	17	70	24	62	54	13	0	32	1.39
30808508--30808566	29	2.0	29	100	0	118	55	10	0	33	1.33
30811889--30811923	17	1.9	19	88	11	56	80	0	0	20	0.72
30811889--30811930	17	2.3	19	84	12	52	78	0	4	16	0.91
30816563--30816888	46	7.6	45	81	14	386	28	22	13	34	1.93
30816652--30816806	36	4.0	36	79	15	184	29	20	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30816606--30816852	82	3.0	82	94	0	422	29	21	13	35	1.92
30816652--30816888	128	1.9	123	87	8	349	29	21	12	36	1.91
30819539--30819614	38	2.0	38	94	0	134	30	38	1	30	1.66
30822268--30822322	10	5.6	10	75	12	51	60	1	3	34	1.25
30822258--30822372	29	4.0	28	75	15	92	57	0	6	34	1.32
30823761--30823785	7	3.6	7	100	0	50	16	0	0	84	0.63
30823946--30823970	3	8.3	3	100	0	50	32	0	0	68	0.90
30824393--30824482	47	1.9	47	95	0	162	21	38	2	37	1.66
30825321--30825546	118	1.9	118	97	0	425	30	8	17	44	1.78
30832355--30832813	119	3.9	115	77	9	390	30	12	17	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173