genome.fa.s17.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  117  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36241978--36242040	27	2.4	26	82	12	67	58	0	3	38	1.14
36245501--36245537	3	12.3	3	88	0	56	32	5	0	62	1.18
36245634--36245671	20	1.9	20	88	0	58	44	2	0	52	1.14
36245991--36246397	108	3.8	108	91	2	638	30	16	19	33	1.94
36245991--36246397	218	1.9	217	90	3	649	30	16	19	33	1.94
36250134--36250174	21	1.9	21	85	5	55	78	0	9	12	0.98
36251508--36251822	44	7.2	43	68	16	207	25	22	26	25	2.00
36251415--36251884	88	5.3	88	91	0	753	26	22	25	24	2.00
36252154--36252384	125	1.8	125	83	2	293	31	16	22	29	1.96
36253918--36253951	3	11.3	3	87	0	50	32	5	0	61	1.20
36254231--36254281	25	2.0	26	88	7	79	19	3	11	64	1.41
36254403--36254941	109	5.0	108	88	5	784	30	17	18	33	1.94
36255964--36256000	18	2.1	18	94	0	65	24	27	8	40	1.83
36256255--36256330	21	3.6	21	85	5	100	32	43	13	10	1.78
36256436--36256560	62	2.1	59	85	7	162	39	3	8	48	1.50
36259578--36259951	125	3.0	124	82	5	461	28	16	17	37	1.92
36260028--36260141	34	3.4	33	79	4	129	47	14	0	38	1.44
36260030--36260157	68	1.9	68	83	4	168	46	14	0	37	1.51
36260023--36260150	34	3.8	32	77	16	127	47	14	0	37	1.45
36263381--36263446	15	4.1	16	72	14	55	34	15	9	40	1.78
36264064--36264179	56	2.1	56	98	0	223	34	17	13	34	1.89
36264682--36264729	23	2.1	23	92	0	78	72	4	2	20	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36264679--36264732	23	2.5	20	78	16	63	68	5	1	24	1.21
36264700--36264745	20	2.3	20	80	0	56	71	6	0	21	1.08
36271944--36271986	17	2.4	18	88	11	63	20	2	0	76	0.89
36271946--36272009	18	3.4	19	82	8	69	26	4	0	68	1.09
36271928--36272043	19	6.2	19	72	16	66	30	4	1	63	1.23
36272031--36272070	18	2.1	19	90	9	64	30	0	0	70	0.88
36271919--36272071	83	1.9	82	82	6	193	30	3	1	64	1.17
36271928--36272073	47	3.2	45	75	9	127	31	3	1	63	1.19
36271919--36272090	83	2.1	81	80	9	188	31	3	1	63	1.18
36271996--36272117	47	2.6	46	79	7	111	32	2	1	63	1.18
36272087--36272122	17	2.1	18	89	5	56	19	2	8	69	1.27
36276039--36276076	18	2.1	18	90	5	58	42	5	0	52	1.24
36282477--36282574	50	1.9	50	85	2	133	27	22	17	32	1.96
36283237--36283287	23	2.2	24	85	3	68	76	1	15	5	1.07
36286043--36286123	26	3.2	26	61	22	62	24	14	28	32	1.95
36285935--36286123	51	3.7	51	80	4	213	24	17	28	29	1.97
36288493--36288569	26	3.0	25	77	5	75	48	0	1	50	1.09
36289156--36289203	24	2.0	24	83	0	60	18	16	16	47	1.82
36289426--36289495	23	3.0	23	80	2	86	28	15	17	38	1.90
36295889--36295955	34	1.9	35	87	3	100	44	14	8	31	1.76
36298362--36298436	20	3.8	20	74	13	66	68	2	0	29	1.04
36298354--36298446	45	2.0	47	83	6	118	64	3	1	31	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36299847--36300408	132	4.3	132	92	0	899	25	24	19	29	1.99
36299897--36300345	44	10.2	44	65	15	158	26	25	19	29	1.98
36311698--36311735	13	3.1	12	88	11	51	73	5	2	18	1.14
36312103--36312145	20	2.1	20	86	4	59	62	4	0	32	1.15
36317710--36317734	10	2.5	10	100	0	50	32	0	8	60	1.26
36320961--36320999	16	2.3	17	91	8	62	33	0	0	66	0.92
36322535--36322578	22	2.0	22	86	8	63	65	0	0	34	0.93
36324606--36324717	39	2.8	40	82	2	136	40	19	19	20	1.92
36324817--36325099	41	6.9	41	78	5	216	24	18	24	33	1.97
36324897--36325071	83	2.1	82	81	3	199	23	19	24	33	1.97
36326625--36326960	102	3.3	101	86	2	435	28	15	26	29	1.96
36326625--36326960	51	6.6	50	77	7	302	28	15	26	29	1.96
36331268--36331656	51	7.7	50	75	4	359	29	14	26	30	1.95
36331264--36331647	102	3.8	102	89	2	540	29	14	26	29	1.95
36333197--36333245	14	3.4	14	74	2	53	14	0	36	48	1.44
36333191--36333246	28	2.0	29	85	3	78	14	0	35	50	1.43
36334706--36334785	31	2.6	31	95	0	142	18	15	21	45	1.86
36338237--36338344	43	2.5	43	93	0	180	22	15	32	29	1.95
36345499--36345573	28	2.6	29	85	8	91	69	0	4	26	1.06
36345524--36345577	11	5.3	10	80	10	56	61	0	3	35	1.14
36345499--36345577	30	2.8	28	86	7	97	67	0	3	29	1.08
36345508--36345573	9	6.8	10	77	18	59	68	0	3	28	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36346060--36346145	10	9.4	10	75	19	73	33	0	0	66	0.92
36346060--36346129	20	3.7	19	79	11	90	31	0	0	68	0.90
36346089--36346159	16	4.4	16	70	19	58	35	0	0	64	0.94
36346060--36346168	28	4.1	27	73	14	93	33	0	0	66	0.99
36346096--36346168	24	2.9	24	75	15	67	34	1	0	64	1.02
36346061--36346156	9	10.9	9	70	14	67	34	0	0	65	0.93
36346079--36346170	25	3.6	25	77	10	89	34	1	0	64	1.01
36349722--36349839	40	3.0	39	80	2	130	36	20	20	22	1.95
36349893--36350126	41	5.7	41	92	0	342	17	23	29	29	1.97
36351398--36351437	7	5.9	7	88	5	55	17	0	50	32	1.47
36351398--36351437	13	2.9	14	88	3	55	17	0	50	32	1.47
36351452--36351619	81	2.2	78	82	8	200	27	2	25	44	1.69
36352473--36352821	147	2.4	146	86	2	495	38	14	13	32	1.85
36356488--36356553	34	1.9	34	84	9	89	43	1	1	53	1.19
36356631--36356674	22	1.9	22	86	9	61	54	6	0	38	1.27
36356706--36356953	43	5.7	43	83	3	311	21	16	34	27	1.95
36356706--36356953	87	2.9	86	84	4	320	21	16	34	27	1.95
36356706--36356952	130	1.9	130	86	6	358	21	16	34	27	1.95
36356722--36356997	130	2.1	131	79	6	301	24	17	31	26	1.97
36357865--36357924	21	2.9	21	87	9	79	20	0	5	75	0.99
36357885--36357941	21	2.8	20	80	17	64	24	0	3	71	1.01
36358699--36358729	15	2.0	16	93	6	55	41	0	6	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36362467--36362491	13	1.9	13	100	0	50	52	16	0	32	1.44
36363060--36363122	31	2.0	31	100	0	126	22	12	31	33	1.91
36367934--36367964	7	4.4	7	95	0	53	58	3	9	29	1.46
36369324--36369348	13	1.9	13	100	0	50	0	0	28	72	0.86
36383136--36383361	118	2.0	113	94	4	398	42	15	17	25	1.88
36389185--36389214	13	2.4	13	94	5	53	50	0	0	50	1.00
36389203--36389261	26	2.2	26	85	11	75	37	0	1	61	1.07
36390194--36390251	9	6.4	9	91	0	89	24	10	25	39	1.87
36390194--36390251	18	3.2	18	95	0	98	24	10	25	39	1.87
36390194--36390251	27	2.1	27	96	0	107	24	10	25	39	1.87
36401076--36401126	14	3.8	14	74	10	52	50	9	1	37	1.47
36401076--36401126	26	2.0	26	96	0	93	50	9	1	37	1.47
36401249--36401295	23	2.0	23	100	0	94	34	21	12	31	1.91
36402361--36402470	56	2.0	56	83	0	139	26	27	23	22	2.00
36403463--36403539	25	3.1	25	81	3	93	28	19	29	22	1.98
36403492--36403556	25	2.6	25	82	0	76	33	20	24	21	1.97
36409846--36409965	55	2.2	56	86	1	161	25	30	24	20	1.99
36410954--36411019	25	2.6	25	78	0	69	31	16	30	21	1.95
36414624--36414672	17	2.9	17	78	3	55	16	0	28	55	1.42
36414720--36414775	19	3.1	17	78	12	58	17	5	28	48	1.69
36428660--36428780	43	2.8	43	80	5	138	30	25	17	26	1.97
36435235--36435276	16	2.7	15	79	20	50	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36435819--36435859	21	2.0	22	85	9	59	29	14	0	56	1.39
36435831--36435891	25	2.5	24	78	10	61	37	4	0	57	1.20
36449058--36449089	4	8.2	4	93	6	57	46	28	0	25	1.53
36451024--36451067	23	2.0	20	87	12	61	40	0	11	47	1.39
36453139--36453177	20	2.0	20	90	10	62	15	23	5	56	1.59
36453468--36453574	50	2.1	50	82	0	133	21	30	20	27	1.98
36455622--36455700	26	3.1	26	68	17	67	48	1	3	46	1.28
36455590--36455707	63	2.0	60	85	8	159	50	3	3	43	1.35
36455702--36455784	39	2.2	39	97	2	159	48	7	2	42	1.44
36455715--36455843	63	2.0	63	100	0	258	48	6	1	42	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173